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152 results • Page 1 of 4
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726
votes
161
replies
108k
views
100 follow
News: The Biostar Handbook. A bioinformatics e-book for beginners.
training handbook
updated 5 days ago by 1.6k • written 6.3 years ago by 96k
45
votes
19
replies
5.6k
views
8 follow
News: Gamestorming For Bioinformatics
gamestorming
updated 25 days ago by 38k • written 10.5 years ago by 27k
32
votes
6
replies
12k
views
7 follow
News: Ncbi Releases Entrez Direct, The Entrez Utilities On The Unix Command Line
ncbi genbank pubmed command-line entrez
updated 17 days ago by 38k • written 9.1 years ago by 153k
31
votes
4
replies
6.1k
views
News: Rosalind: A Novel Bioinformatics Education Platform
education
updated 25 days ago by 38k • written 10.5 years ago by ▴ 310
25
votes
7
replies
5.8k
views
News: Pubmed Commons : A System That Enables Researchers To Share Their Opinions About Scientific Publications
ncbi pubmed
updated 18 days ago by 38k • written 9.4 years ago by 153k
24
votes
7
replies
4.0k
views
News: #Bioinformatics Crowdcoding
crowd-coding
updated 20 days ago by 38k • written 9.7 years ago by 153k
23
votes
7
replies
4.0k
views
News: Research accounts on GitHub
github git
updated 13 days ago by 38k • written 8.9 years ago by 153k
22
votes
3
replies
2.7k
views
News: Biostar: 10,000 Question Milestone
meta
updated 23 days ago by 38k • written 9.8 years ago by 96k
21
votes
7
replies
7.1k
views
News: Survey: Rna-Seq Analysis For Differential Gene/Transcript Expression [Updated With Results]
transcript RNA-seq gene
updated 24 days ago by 38k • written 10.3 years ago by ▴ 250
19
votes
11
replies
6.3k
views
News: Solid Software Tools: Denovo Assembly/Xsq Tools Pipeline Mirrored At Biostar
SOLID
updated 25 days ago by 38k • written 10.5 years ago by 96k
17
votes
9
replies
3.2k
views
News: My Ncbi Curriculum Vitae Web Application: Sciencv
ncbi
updated 19 days ago by 38k • written 9.5 years ago by 153k
17
votes
6
replies
8.4k
views
News: Final registration deadline: September 15th - Bioinformatics Hands-On NGS Data Analysis Workshops 2014
methylation RNA-seq
updated 13 days ago by 38k • written 9.0 years ago by 9.9k
15
votes
3
replies
6.4k
views
News: Top Bioinformatics Contributions Of 2013
bioinformatics
updated 18 days ago by 38k • written 9.3 years ago by ★ 1.1k
15
votes
18
replies
7.3k
views
6 follow
News: New Free Community Tutorial Website For Bioinformatics Learning
ChIP-seq genome snp RNA-seq
updated 20 days ago by 38k • written 9.7 years ago by ▴ 610
15
votes
4
replies
2.3k
views
News: Call For Nominations: 2013 Benjamin Franklin Award
benjamin-franklin-award award
updated 24 days ago by 38k • written 10.1 years ago by 153k
13
votes
2
replies
2.7k
views
News: A Summary Of All Encode Related News On The Openhelix Blog: Encode Floods The News
encode
updated 25 days ago by 38k • written 10.5 years ago by 96k
12
votes
8
replies
3.0k
views
News: 'Potential Rna-Dna Binding Site In Alu Repeat', Or 'Why Should I Allow Multiple Mapping Positions When Analyzing Chipseq Data?'
chipseq rna
updated 20 days ago by 38k • written 9.7 years ago by 9.9k
12
votes
0
replies
3.1k
views
News: Looking For Feedback On The Json Output For Ncbi E-Utilities
ncbi eutils
updated 24 days ago by 38k • written 10.3 years ago by ▴ 360
12
votes
8
replies
6.4k
views
News: rRNA Depletion / Poly-A Selection Responsible for RNA-seq Bias
rRNA-depletion RNA-seq-bias
updated 13 days ago by 38k • written 8.7 years ago by ▴ 640
12
votes
7
replies
3.3k
views
News: Welcome Ensembl REST with more endpoints!
ensembl rest-api
updated 10 days ago by 38k • written 8.4 years ago by ★ 5.2k
11
votes
0
replies
3.1k
views
News: BWA 0.7.11 is out, supports ALT contigs
BWA
updated 6 days ago by 38k • written 8.2 years ago by 103k
11
votes
2
replies
3.4k
views
News: Coursera: Computational Molecular Evolution
course
updated 23 days ago by 38k • written 9.8 years ago by 153k
10
votes
4
replies
558
views
News: RNA-Seq Data Analysis Workshop - Join us in Berlin, Germany from March 27-30, 2023!
NGS transcriptomics workshop
updated 3 days ago by ▴ 30 • written 5 weeks ago by 9.9k
10
votes
0
replies
2.7k
views
News: Cfp: Camda 2013 Challenge: Big Data In Life Sciences
ngs conference
updated 24 days ago by 38k • written 10.0 years ago by ▴ 240
10
votes
1
reply
2.9k
views
News: Ucsc: Dna Sequences In Web Pages Indexed By Bing.Com / Microsoft Research (All Phenotype And Literature Tracks)
web ucsc
updated 17 days ago by 38k • written 9.2 years ago by 153k
9
votes
3
replies
3.0k
views
News: New Human Genome Assembly (Grch38) Released
human-genome assembly
updated 18 days ago by 38k • written 9.2 years ago by 153k
9
votes
4
replies
3.4k
views
News: Conference Announcement - Camda 2013
conference classification
updated 24 days ago by 38k • written 10.2 years ago by ▴ 240
9
votes
0
replies
2.0k
views
News: Commercial advertising on Biostars
meta biostars advertising
updated 11 days ago by 38k • written 8.5 years ago by 96k
9
votes
5
replies
8.2k
views
News: A New Rest Based Api For Kegg: Kyoto Encyclopedia Of Genes And Genomes
kegg api
updated 24 days ago by 38k • written 10.3 years ago by ▴ 50
8
votes
1
reply
3.1k
views
News: LAST DAY TO REGISTER - NGS Workshop 2015: A Practical Introduction to NGS Data Analysis (Oxford, UK)
RNA-Seq workshop
updated 10 days ago by 38k • written 8.4 years ago by 9.9k
8
votes
6
replies
3.7k
views
News: Last Call: Upcoming Workshop - Rna-Seq Bioinformatics: A Practical Introduction
RNA-seq
updated 24 days ago by 38k • written 10.2 years ago by 9.9k
8
votes
0
replies
2.6k
views
News: Plos Computational Biology: Translational Bioinformatics
publications plos
updated 24 days ago by 38k • written 10.0 years ago by 9.5k
8
votes
2
replies
648
views
News: Save time and money through improved onboarding of your NGS data scientists
NGS data-analysis
updated 2 days ago by 38k • written 3.2 years ago by 9.9k
8
votes
0
replies
2.0k
views
News: A Call To Create Listings Of The Best Review Papers
papers
updated 25 days ago by 38k • written 10.6 years ago by 96k
7
votes
4
replies
2.4k
views
News: Boston Ma Us Area Folks: Software Carpentry Workshop For Women In Science Coming Up
python training
updated 24 days ago by 38k • written 9.9 years ago by 11k
7
votes
0
replies
1.7k
views
News: Us Ethics Panel Reports On Dna Sequencing And Privacy
next-gen
updated 24 days ago by 38k • written 10.4 years ago by 11k
7
votes
3
replies
4.2k
views
News: Pathway Commons 2 - Search And Visualize Public Biological Pathway Information. Single Point Of Access.
api cytoscape
updated 18 days ago by 38k • written 9.3 years ago by ★ 1.2k
7
votes
1
reply
2.9k
views
News: A Multi-Split Mapping Algorithm For Circular Rna, Splicing, Trans-Splicing, And Fusion Detection
ngs mapping
updated 17 days ago by 38k • written 9.1 years ago by 9.9k
6
votes
7
replies
4.8k
views
News: Illumina Nextseq 500 And Hiseq X Ten: Newer Tech Lowering Cost Per Mbp
Illumina
updated 17 days ago by 38k • written 9.2 years ago by ▴ 640
6
votes
1
reply
1.7k
views
News: Contest: Antibody Marathon Match Problem: ABCSpeedup
contest
updated 5 days ago by 38k • written 8.2 years ago by 153k
6
votes
1
reply
3.4k
views
News: Symposium And Rna-Seq Data Analysis Workshop Charlotte May 13-14
RNA RNA-seq training
updated 13 days ago by 38k • written 9.0 years ago by ★ 2.3k
6
votes
1
reply
2.3k
views
News: FastQC Version 0.11.1 released
genome next-gen-sequencing
updated 13 days ago by 38k • written 8.8 years ago by ★ 2.2k
6
votes
1
reply
2.6k
views
News: GMOD Online Training 2014 coming up
galaxy chado gmod annotation
updated 13 days ago by 38k • written 8.9 years ago by 11k
6
votes
0
replies
2.5k
views
News: Broad Releases Fastg Multiple Seq Assembly Format
FASTG reference-format
updated 24 days ago by 38k • written 10.3 years ago by ★ 5.2k
6
votes
9
replies
3.6k
views
News: 1000 Genomes : The Initial Phase 3 variant list and phased genotypes.
1000genomes
updated 13 days ago by 38k • written 8.7 years ago by 153k
6
votes
2
replies
1.6k
views
News: Belly Button Biodiversity Project Requests Your Analysis
biodiversity project
updated 24 days ago by 38k • written 10.3 years ago by 11k
6
votes
0
replies
5.0k
views
News: Game Changer? Illumina Nextseq 500
illumina
updated 17 days ago by 38k • written 9.2 years ago by ★ 1.3k
6
votes
1
reply
1.8k
views
News: Massively Differential Bias Between Two Widely Used Illumina Library Preparation Methods For Small Rna Sequencing
illumina RNA-seq
updated 18 days ago by 38k • written 9.2 years ago by 9.9k
6
votes
0
replies
2.4k
views
News: http://crackingthebiocode.github.io : Profiles of Computational Biologists & Bioinformaticians
career
updated 10 days ago by 38k • written 8.5 years ago by 153k
6
votes
0
replies
2.5k
views
News: New Methods Section In Plos Computational Biology
publications plos
updated 24 days ago by 38k • written 10.0 years ago by 18k
152 results • Page 1 of 4
Recent Votes
C: Converting an output de-novo transcriptome assembled with Trinity to a .gff3 fil
unplaced, unlocalized, ... scaffolds from hg19 to GRCh38
C: extracting heterozygous snp from a vcf file
Comment: March 13-16: Virtual Nextflow and nf-core training event in 5 languages
Answer: Where do find virulence gene information in a gff/gtf file?
Comment: split fasta file to train deep learning model
Criteria for filtering contigs after spades assembly
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Recent Awards • All
Popular Question to santos48 ▴ 40
Popular Question to ghataksnd ▴ 10
Popular Question to igorm ▴ 20
Scholar to colindaven 4.5k
Teacher to Matthias Zepper 3.3k
Popular Question to mohammedtoufiq91 ▴ 210
Popular Question to MatthewP ★ 1.2k
Recent Replies
Comment: samtools idxstats not removing ChrM by Jeremy Leipzig 21k
can we see the output from this? `samtools idxstats chipseq/results/bowtie2/PPARg/PPARg_Input_Rep1_aln_sorted.bam` conversely just as an e…
Comment: Nextflow Stringtie: command not found Error by ATpoint 70k
It's bad practice to delete posts that received an answer ( = a user invested time - in this case me but it of course applies generally). D…
Comment: Converting an output de-novo transcriptome assembled with Trinity to a .gff3 fil by EkHe • 0
Hi @juke34, if you're able, can you please clarify something for me (based on the answer you've given here)? Thanks a lot in advance. I als…
Answer: Practical Haplotype Graph -- Pathing Error by lcj34 ▴ 220
FYI - The latest PHG docker version (tag 1.4) has a fix for this issue.
Comment: Nextflow: No space left on device, process using output directory as input? by Maxime Garcia ▴ 220
Nextflow should only link inputs (unless stated otherwise), so even if you use outdir as input it should not be much of an issue, but still…
Comment: Problem in converting SAM to BAM file by DROP SEQ by lieven.sterck 14k
Hi https://www.biostars.org/u/126271/, welcome. it might be good to add some more info on your "question". Now it only shows an error mes…
Comment: Trying to install Roary with Conda results in error message by tobiwan • 0
Thank you for your answer I'm using Ubuntu 22.04.2 LTS, command line used: conda install roary. Or do you need a screenshot of the whole …
Comment: Nextflow: No space left on device, process using output directory as input? by colindaven 4.5k
Yes, don't use the outdir as an input. You might get infinite loops.
Comment: UnicodeDecodeError: 'utf-8' codec can't decode byte 0x8b in position 1: invalid by wangjincheng • 0
I tried unzipped file, it shows the same error
Comment: UnicodeDecodeError: 'utf-8' codec can't decode byte 0x8b in position 1: invalid by Pierre Lindenbaum 153k
> use python package to load and analysis vcf.gz files looks like it doesn't like gzipped file. Are you sure this software can read gzip…
Comment: Trying to install Roary with Conda results in error message by ATpoint 70k
This cannot be answered. Add your command line and operating system.
Comment: split fasta file to train deep learning model by shenwei356 7.9k
shuffle the sequences, with a rand seed 1. seqkit shuffle --two-pass --rand-seed 1 hairpin.fa -o hairpin.s1.fa testing data …
Comment: split fasta file to train deep learning model by pinheirofabiano ▴ 10
I'm trying to split my file in two, using Seqkit, but it is not working.. using the command sample, I can generate a file that contains 80%…
Comment: split fasta file to train deep learning model by pinheirofabiano ▴ 10
thank you very much for your comment, @Mensur My file is just a list of peptides, not a complete genome
Comment: March 13-16: Virtual Nextflow and nf-core training event in 5 languages by Maxime Garcia ▴ 220
All the videos are now online and organized in 5 different playlists on the nf-core youtube channel: https://www.youtube.com/@nf-core/playl…
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