6 days ago by
PeterC_NCBI
▴
370
3
votes
0
replies
129
views
3
votes
0
replies
237
views
News:
gnomAD v4 released
26 days ago by
Pierre Lindenbaum
158k
3
votes
2
replies
2.1k
views
7 days ago by
Ming Tommy Tang
★
3.6k
1
vote
0
replies
173
views
updated 19 days ago by
Ram
41k
•
written 19 days ago by
carlopecoraro2
★
2.4k
1
vote
0
replies
199
views
updated 29 days ago by
Ram
41k
•
written 4 weeks ago by
carlopecoraro2
★
2.4k
0
votes
0
replies
108
views
6 days ago by
carlopecoraro2
★
2.4k
0
votes
0
replies
147
views
0
votes
0
replies
115
views
0
votes
0
replies
149
views
News:
GWAS course
updated 19 days ago by
Ram
41k
•
written 20 days ago by
carlopecoraro2
★
2.4k
0
votes
0
replies
152
views
11 days ago by
carlopecoraro2
★
2.4k
0
votes
0
replies
176
views
updated 26 days ago by
Ram
41k
•
written 26 days ago by
carlopecoraro2
★
2.4k
0
votes
0
replies
140
views
22 days ago by
carlopecoraro2
★
2.4k
0
votes
0
replies
165
views
News:
GWAS course
4 days ago by
carlopecoraro2
★
2.4k
0
votes
0
replies
113
views
8 days ago by
carlopecoraro2
★
2.4k
0
votes
0
replies
180
views
0
votes
3
replies
996
views
0
votes
0
replies
189
views
updated 28 days ago by
Ram
41k
•
written 28 days ago by
carlopecoraro2
★
2.4k
0
votes
0
replies
178
views
0
votes
0
replies
144
views
15 days ago by
carlopecoraro2
★
2.4k
Recent Votes
Recent Locations •
All
Netherlands, just now
Bologna, 1 minute ago
Netherlands, 3 minutes ago
Spain, Barcelona, 7 minutes ago
South Korea, 8 minutes ago
Republic of Ireland, 9 minutes ago
Germany, 10 minutes ago
Recent Awards •
All
Popular Question to
doggie
•
0
Popular Question to
Hamtaro
▴
10
Popular Question to
Ivan
▴
60
Student to
Rafael Soler
★
1.2k
Popular Question to
luffy
▴
110
Popular Question to
Tao
▴
30
Popular Question to
ashaneev07
▴
20
Recent Replies
Comment: Best practices for differential expression analysis with low-yield Nanopore/ONT
by
dthorbur
▴
830
I don't have a suggestion for low yield DE analyses, but I am curious about the samples. Did you conduct any ribo-depletion steps prior to …
Answer: How can I map coordinates between two strains of yeast?
by
dthorbur
▴
830
It sounds like you are looking for synteny between the two genomes. I'm assuming they are assembled, but that may not be the case. If so, […
Comment: Identify clusters of populations based on gene expression
by
Nitin Narwade
★
1.5k
Why don't you just plot it on your UMAP If it is specific to one cluster/sub-population you should get a relatively high expression in that…
Answer: The difference blastn output when using subject and db options
by
GenoMax
136k
Default `task` option is `megablast` for `blastn` which looks for `highly similar sequences` compared to `blastn` which is looking for `som…
Comment: Discrepancy in total number of bases in trimmed read1 and read2 files after BBDu
by
GenoMax
136k
https://www.biostars.org/u/14684/ may comment on this but it may be the order of operations that is causing this. After the `tpe` is applie…
Comment: Construction of single sequence assembly out of contigs
by
colindaven
5.7k
Inspector (only for long reads) and Merqury for short reads are also pretty good methods for doing a QC of your assembly.
Comment: featureCounts results: low rate of 'Successfully assigned alignments'
by
GenoMax
136k
> why I have soo many multimapping reads?
That is a characteristic of the libraries. Not much you can do at this point in process. Just ha…
Comment: unicycler error : [Errno 13] Permission denied:
by
barslmn
★
2.0k
This is not really a bioinformatics question.
Either you're not the owner or in the group of the directory or the directory don't have wr…
Comment: Python function to export the annotated records to genbank file using python and
by
barslmn
★
2.0k
Could you paste the error as printed to your screen?
Comment: Construction of single sequence assembly out of contigs
by
analyst
▴
10
I have found dedup.sh script of bbmap tool that removes duplicated sequences. Also there is a seqtk tool. Is it safe to remove duplicated s…
Comment: featureCounts results: low rate of 'Successfully assigned alignments'
by
Hamtaro
▴
10
Thank you for your reply. I how can I identify why I have soo many multimapping reads?
The samples comes from blood from patients under d…
Comment: Construction of single sequence assembly out of contigs
by
analyst
▴
10
Honestly I have not assessed duplication after assembly. However I used trimmomatic for data filtration before assembly.
Trimmomatic param…
Answer: featureCounts results: low rate of 'Successfully assigned alignments'
by
kvn95ss
▴
20
I could see the following clues from -
hisat2 - ```23026867 (61.37%) aligned concordantly >1 times```
And from featureCounts - ``` Mu…
Comment: CPTAC data, download, merge
by
Mohita
▴
50
I am also facing the same problem. I will be grateful if you help me out for this.
Comment: Circular genome browser
by
giammafer
▴
20
Thank you very much for organising the 'awesome-genome-visualization' collection.
I searched in your database before I made this question …
Traffic: 2018 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6