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520 results • Page
2 of 11
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3
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1
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6.4k
views
News:
LinkedOmics - a web portal for TCGA/CPTAC data
TCGA
cptac
cancer
updated 15 days ago by
Ram
39k • written 5.5 years ago by
GenoMax
129k
3
votes
0
replies
990
views
News:
New command line tool for annotating variants, vai.pl
UCSC
SNP
VAI
updated 20 days ago by
Ram
39k • written 6.0 years ago by
genecats.ucsc
▴ 580
3
votes
0
replies
2.3k
views
News:
Workshop: GATK Best Practices for Variant Discovery, Edinburgh, 17-19 July 2017
GATK
workshop
variant-calling
updated 21 days ago by
Ram
39k • written 6.1 years ago by
Bert Overduin
★ 3.7k
3
votes
0
replies
1.8k
views
News:
Free Training in Bioinformatic analysis available with Pine Biotech T-BioInfo
RNA-Seq
biotech
next-gen-sequencing
updated 20 days ago by
Ram
39k • written 5.9 years ago by
Pine Biotech
▴ 70
3
votes
0
replies
881
views
News:
Free online Ensembl course
webinar
Ensembl
mooc
training
online
updated 8 days ago by
Ram
39k • written 4.8 years ago by
Emily
23k
3
votes
2
replies
1.1k
views
News:
Genome Informatics meeting software list
meetings
genomics
informatics
software
updated 15 days ago by
Ram
39k • written 5.6 years ago by
Sean Davis
26k
3
votes
0
replies
1.1k
views
News:
Course on Programming for Evolutionary Biology
Evolution
R
genome
Python
updated 7 days ago by
Ram
39k • written 4.5 years ago by
Chris Fields
★ 2.2k
3
votes
0
replies
1.7k
views
News:
Deep learning in GATK4
GATK4
deep-learning
GATK
updated 14 days ago by
Ram
39k • written 5.4 years ago by
vdauwera
★ 1.2k
3
votes
2
replies
854
views
News:
BETA Testing Opportunity for new RNA-seq data analysis tool
beta-testing
RNA-seq
multi-omics
ngs
updated 6 days ago by
Ram
39k • written 4.4 years ago by
polina99
• 0
3
votes
3
replies
528
views
News:
NCBI's IgBLAST version 1.21.0 is now available
IgBLAST
BLAST
T-Cell
NCBI
receptors
15 days ago by
PeterC_NCBI
▴ 260
3
votes
0
replies
1.3k
views
News:
NIH Strategic Plan for Data Science
nih
data-science
updated 10 days ago by
Ram
39k • written 5.2 years ago by
GenoMax
129k
3
votes
1
reply
1.2k
views
News:
GATK returns to a fully open-source license
gatk
updated 20 days ago by
Ram
39k • written 6.0 years ago by
Istvan Albert
98k
3
votes
1
reply
949
views
News:
Results are now available for the precisionFDA CDRH Biothreat Challenge!
NGS
metagenomics
FDA
biothreat
updated 6 days ago by
Ram
39k • written 4.3 years ago by
sarah01122009
▴ 60
3
votes
0
replies
1.8k
views
News:
Landscape Genomics course in Berlin (Germany). Registration deadline is next week
next-gen
R
Genomics
SNP
updated 20 days ago by
Ram
39k • written 6.0 years ago by
carlopecoraro2
★ 2.3k
3
votes
1
reply
2.0k
views
News:
NCBI : New API Keys for the E-utilities
pubmed
eutils
ncbi
api
updated 15 days ago by
Ram
39k • written 5.6 years ago by
Pierre Lindenbaum
154k
3
votes
1
reply
1.8k
views
News:
Precision Medicine Bioinformatics: From raw genome and transcriptome data to clinical interpretation (PMBI01)
next-gen
assembly
RNA-Seq
gene
updated 13 days ago by
Ram
39k • written 5.3 years ago by
oliverhooker
▴ 110
3
votes
1
reply
842
views
News:
Course - Genomics with R and Bioconductor - Berlin
R
Bioconductor
updated 1 day ago by
Ram
39k • written 3.9 years ago by
carlopecoraro2
★ 2.3k
3
votes
2
replies
288
views
News:
Participate in a NCBI/NIAID Virtual Codeathon: VCF Files for Population Genomics, Jul 31 - Aug 4, 2023
VCF
SARS-CoV-2
NCBI
Codeathon
7 days ago by
PeterC_NCBI
▴ 260
3
votes
0
replies
1.3k
views
News:
Analysis of single cell RNA-seq data - Berlin 23 -27 March 2020
scRNA-seq
RNA-Seq
updated 14 hours ago by
Ram
39k • written 3.9 years ago by
carlopecoraro2
★ 2.3k
3
votes
2
replies
1.0k
views
News:
Course "Data Crunching: from hell to heaven", Udine, Italy, 25-27 July, 2018
NGS
next-generation-sequencing
updated 9 days ago by
Ram
39k • written 5.0 years ago by
Fabio Marroni
★ 3.0k
3
votes
1
reply
795
views
News:
Do you want to learn how to analyze your genomic data using R and Bioconductor?
Genomics
R
Bioconductor
updated 10 hours ago by
Ram
39k • written 3.9 years ago by
carlopecoraro2
★ 2.3k
3
votes
1
reply
686
views
News:
PrecisionFDA has won a FedHealth IT award!!
platform
cloud-based
precision-medicine
award
updated 1 day ago by
Ram
39k • written 4.0 years ago by
stephens_sarah
▴ 150
3
votes
1
reply
1.4k
views
News:
Bioconductor 2017 Conference, Boston, July 26-28
R
conference
Bioconductor
updated 21 days ago by
Ram
39k • written 6.2 years ago by
Sean Davis
26k
3
votes
0
replies
846
views
News:
Invitation to submit articles to the Bioconductor Gateway on F1000Research
bioconductor
updated 10 days ago by
Ram
39k • written 5.2 years ago by
Sean Davis
26k
2
votes
0
replies
774
views
News:
Interested in learning more about GWAS? Course in Canada this September
GWAS
pipeline
updated 14 hours ago by
Ram
39k • written 3.9 years ago by
carlopecoraro2
★ 2.3k
2
votes
3
replies
1.4k
views
News:
GCCBOSC 2018: A Bioinformatics Community Conference Call for Abstracts
Galaxy-Community-Conference
BOSC
GCC
updated 13 days ago by
Ram
39k • written 5.3 years ago by
Chris Fields
★ 2.2k
2
votes
0
replies
2.6k
views
News:
2nd Edition of the Biostar Handbook. New online course starts now.
biostar-handbook
updated 6 days ago by
Ram
39k • written 4.4 years ago by
Istvan Albert
98k
2
votes
1
reply
1.8k
views
News:
Genomic Data Visualization and Interpretation Workshop
next-gen
R
genome
RNA-Seq
updated 20 days ago by
Ram
39k • written 5.9 years ago by
carlopecoraro2
★ 2.3k
2
votes
2
replies
1.4k
views
News:
User-friendly Bioinformatics From RNA Seq to Biological Interpretation
machine-learning
RNA-seq
updated 8 days ago by
Ram
39k • written 4.9 years ago by
sahil
▴ 10
2
votes
0
replies
860
views
News:
Registration open for Galaxy Community Conference (GCC) 2019
galaxy
updated 2 days ago by
Ram
39k • written 4.2 years ago by
Devon Ryan
103k
2
votes
0
replies
4.1k
views
News:
Workshop: Analysis of single cell RNA-seq data
R
next-gen
RNA-Seq
alignment
updated 17 days ago by
Ram
39k • written 5.9 years ago by
carlopecoraro2
★ 2.3k
2
votes
1
reply
1.4k
views
News:
Meet Dr. Giovanni Marco Dall'Olio
NGS
training
RNA-Seq
updated 2 days ago by
Ram
39k • written 4.2 years ago by
David Langenberger
9.9k
2
votes
0
replies
3.1k
views
News:
"Practical GWAS Using Linux and R" Workshop
GWAS
Linux
R
next-gen
updated 17 days ago by
Ram
39k • written 5.9 years ago by
carlopecoraro2
★ 2.3k
2
votes
0
replies
663
views
News:
Course: RNA-seq Analyses in non-model organisms (Berlin 11-15 November 2019)
gene
RNA-Seq
next-gen
updated 1 day ago by
Ram
39k • written 4.0 years ago by
carlopecoraro2
★ 2.3k
2
votes
0
replies
1.1k
views
News:
Coming Soon precisionFDA Hidden Treasures Warm Up Challenge, July 18 - September 12, 2017
next-gen-sequencing
updated 17 days ago by
Ram
39k • written 5.9 years ago by
patriciareneecarter
▴ 90
2
votes
1
reply
1.2k
views
News:
of the Galaxy: 17.05 Release, Galaxy Community Conference, and more
event
galaxy
paper
updated 20 days ago by
Ram
39k • written 6.0 years ago by
Dave Clements
▴ 610
2
votes
2
replies
1.2k
views
News:
Course: Applied Statistics and Bioinformatics with R and Bioconductor. (Berlin, 22-26 January 2018)
R
next-gen-sequencing
updated 15 days ago by
Ram
39k • written 5.5 years ago by
carlopecoraro2
★ 2.3k
2
votes
1
reply
755
views
News:
Gene set enrichment and pathway analysis in HT data
next-gen-sequencing
RNA-Seq
updated 6 days ago by
Ram
39k • written 4.3 years ago by
carlopecoraro2
★ 2.3k
2
votes
2
replies
2.4k
views
News:
Interview Dealing with RADseq data: some tips from our instructors
NGS
RADseq
updated 15 days ago by
Ram
39k • written 5.6 years ago by
carlopecoraro2
★ 2.3k
2
votes
0
replies
916
views
News:
#NGSchool2019: Machine Learning for Biomedicine
ngschool
workshop
training
summer-school
next-gen
updated 2 days ago by
Ram
39k • written 4.1 years ago by
kzkedzierska
▴ 290
2
votes
0
replies
2.2k
views
News:
Course on "Genomic data visualisation and manipulation using Python"
genome
next-gen
RNA-Seq
updated 16 days ago by
Ram
39k • written 5.7 years ago by
oliverhooker
▴ 60
2
votes
0
replies
608
views
News:
Speciation Genomics course in Canada (September 2019)
R
SNP
next-gen
updated 1 day ago by
Ram
39k • written 3.9 years ago by
carlopecoraro2
★ 2.3k
2
votes
0
replies
844
views
News:
GWAS course in Canada
GWAS
updated 6 days ago by
Ram
39k • written 4.3 years ago by
carlopecoraro2
★ 2.3k
2
votes
1
reply
957
views
News:
PrecisionFDA and NCI-CPTAC Mislabeling Challenge is Launching on September 24th!
precision-medicine
NCI
FDA
proteomics.RNA
updated 8 days ago by
Ram
39k • written 4.7 years ago by
stephens_sarah
▴ 150
2
votes
0
replies
910
views
News:
Programmatic access uniprot.org: Deprecation of legacy REST URLs /batch and /mapping - please replace by /uploadlists
UniProt
updated 9 days ago by
Ram
39k • written 5.0 years ago by
Elisabeth Gasteiger
★ 2.2k
2
votes
0
replies
1.1k
views
News:
April Galaxy News: UseGalaxy.org gets siblings; GCC Deadlines; GCCBOSC Childcare...
bosc
galaxy
events
updated 10 days ago by
Ram
39k • written 5.1 years ago by
Dave Clements
▴ 610
2
votes
0
replies
1.1k
views
News:
Mendel,MD: A user-friendly open-source web tool for analyzing WES and WGS in the diagnosis of patients with Mendelian disorders
variant-prioritization
mendelian-disorders
updated 20 days ago by
Ram
39k • written 6.0 years ago by
Raony Guimarães
★ 1.2k
2
votes
0
replies
1.8k
views
News:
Coding,data management and Shiny applications using RStudio for evolutionary biologists
coding
data-management
R
shiny
updated 22 days ago by
Ram
39k • written 6.2 years ago by
oliverhooker
▴ 110
2
votes
0
replies
873
views
News:
Introduction to GWAS Workshop- Canada 9-13 September 2019
GWAS
updated 1 day ago by
Ram
39k • written 4.0 years ago by
carlopecoraro2
★ 2.3k
2
votes
0
replies
922
views
News:
Free Ensembl browser workshop: Hinxton, Cambridge, UK, 17 October 2018
training
course
ensembl
workshop
updated 8 days ago by
Ram
39k • written 4.8 years ago by
Astrid_Ensembl
▴ 330
520 results • Page
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Answer: How to determine the exact version of hg38 if I have only the FASTA file
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Comment: PacBio Pipeline and Tools for Variant Call
by
Kiran
▴ 80
Thanks a lot William, I am Clear now
Comment: The famous WGS dataset, Ashkenazi Trio?
by
cmdcolin
★ 3.0k
what is valuable information to you
Answer: Why weblogo of biopython doesn't work?
by
minakshiboruahassam
• 0
The weblogo3 application is giving same file even if u run the scripts separately on python standalone or whatever. The weblogo command is …
Answer: Make a BedGraph file
by
rfran010
▴ 80
I would suggest bedtools makewindows to generate your 3,000bp bins then bedtools coverage to generate fraction of repeats over your windows…
Answer: What is the best way to clean bulk RNA-seq data?
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rfran010
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Honestly, I am a fan of visualizing to select a threshold since these can depend on the specific experiment. I would even just run standard…
Answer: Help with running ATAC using Encode pipeline
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rfran010
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Read all instructions carefully Specifically, this info is under the "Input JSON file specification" section with details in the followin…
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rfran010
▴ 80
There have been some good suggestions, but it seems like you may be asking one of two questions, either (1) how to do bioinformatics? or (2…
Answer: Genome assembly statistical tools
by
Bryan
• 0
I'll follow up what a few others have mentioned, but I like stats.sh within the BBTools package for raw assembly stats. I'll then polish my…
Comment: how to design a guide RNA
by
rfran010
▴ 80
I agree this is very basic CRISPR mechanism and you'd be better off reading sites that could explain better than me. However, there is a lo…
Comment: ATAC peak-calling: same peak ID across multiple experimental conditions?
by
rfran010
▴ 80
You want to use the MACS2 score columns? You can retain these with bedtools option `-c` . This will retain the score columns from any merge…
Comment: best annotation approach for peaks
by
rfran010
▴ 80
The number of regions annotated as "Promoters" is the same regardless of TSS length? You can add this argument to annotatePeak (for mouse M…
Answer: Optimum setting for local blastp for ~10K sequences
by
GenoMax
129k
It is possible that NCBI keeps the entire `nr` indexes in memory and searches against that so there is no I/O involved. NCBI now also uses …
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swbarnes2
13k
10x does give you a big flashing warning telling you what the new default is, and tells you how to redo it without that if it's not what yo…
Comment: Identification of genes involved in my pathway
by
smanzano250800
• 0
Thank you, but it doesn´t work. I´ll try GeneSCF again.
Comment: How GATK pipeline called a homozygeous alternate allele (1/1) although one copy
by
mohsamir2016
▴ 30
Organism: gallus gallus Genome version used: GRCg6a Chr and Position: NC_006113.5, 24618 Ref allele: A Alt allele: G Genotype: 1/1 (G/G) …
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