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148 results • Page 1 of 3
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9
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3
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4.5k
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News: Bioinformatics Contest 2020. Call for problems
contest
updated 4 days ago by 39k • written 3.7 years ago by ▴ 830
8
votes
0
replies
1.1k
views
News: Final Call - Hands-On RNA-Seq Data Analysis Workshop - only 2 seats left
data-analysis RNA-Seq workshop
updated 6 days ago by 39k • written 3.9 years ago by 9.9k
8
votes
4
replies
1.6k
views
News: supporting vg users on biostars
variation-graph genome vg vgteam
updated 4 days ago by 39k • written 3.7 years ago by ★ 2.4k
7
votes
0
replies
848
views
News: New layout for NCBI BLAST FTP database site starting February 4, 2020
ftp blast blast_index blast-plus
updated 1 hour ago by 39k • written 3.4 years ago by 130k
6
votes
0
replies
808
views
News: CWL user support moving to https://cwl.discourse.group/; many thanks to Biostars for over 4 years of support!
cwl thanks
updated 1 day ago by 39k • written 3.6 years ago by ★ 1.9k
5
votes
2
replies
731
views
News: The precisionFDA BioCompute Object App-a-thon has been extended to October 18!
BioCompute challenge
updated 5 days ago by 39k • written 3.9 years ago by ▴ 70
4
votes
0
replies
604
views
News: Call for Bioinformatics Papers - Genes Special Issue
gene
updated 23 hours ago by 39k • written 3.4 years ago by ▴ 700
4
votes
2
replies
1.1k
views
News: Hands-On Workshop: How to use bisulfite-treated sequencing to study DNA methylation (BS-Seq, Bisulfite-Seq, WGBS)
Workshop methylation bisulfite
updated 1 day ago by 39k • written 3.7 years ago by ▴ 970
4
votes
1
reply
977
views
News: Bioinformatics Workflows with Nextflow
Netflow reproducibility Workflows
updated 22 hours ago by 39k • written 3.5 years ago by ★ 2.3k
3
votes
0
replies
1.1k
views
News: Nextflow Training Course
Pipeline Workflow NEXTFLOW
updated 1 day ago by 39k • written 3.7 years ago by ★ 2.3k
3
votes
1
reply
687
views
News: PrecisionFDA has won a FedHealth IT award!!
platform cloud-based precision-medicine award
updated 6 days ago by 39k • written 4.0 years ago by ▴ 150
3
votes
1
reply
1.1k
views
News: UniProt: Change of FT and CC section in UniProtKB text format
uniprot protein
updated 4 days ago by 39k • written 3.7 years ago by ★ 2.2k
3
votes
0
replies
595
views
News: Testing and feedback of upcoming salmon release
salmon RNA-Seq
updated 4 days ago by 39k • written 3.7 years ago by 6.1k
3
votes
0
replies
676
views
News: Phylogenomics course in Berlin
snp R next-gen
updated 1 day ago by 39k • written 3.5 years ago by ★ 2.3k
3
votes
1
reply
844
views
News: Course - Genomics with R and Bioconductor - Berlin
R Bioconductor
updated 6 days ago by 39k • written 3.9 years ago by ★ 2.3k
3
votes
0
replies
1.3k
views
News: Analysis of single cell RNA-seq data - Berlin 23 -27 March 2020
scRNA-seq RNA-Seq
updated 6 days ago by 39k • written 3.9 years ago by ★ 2.3k
3
votes
0
replies
658
views
News: ::FINAL CALL:: NGS Data Analysis for Beginners - 11-13 December 2019 in Munich, Germany (2 seats left)
NGS Workshop
updated 1 day ago by 39k • written 3.6 years ago by 9.9k
3
votes
1
reply
796
views
News: Do you want to learn how to analyze your genomic data using R and Bioconductor?
Genomics R Bioconductor
updated 5 days ago by 39k • written 3.9 years ago by ★ 2.3k
2
votes
0
replies
823
views
News: Course: Approaches and Computational tools for CRISPR Genome editing
Genome-Editing CRISPR
updated 6 days ago by 39k • written 4.0 years ago by ★ 2.3k
2
votes
0
replies
509
views
News: Introduction to RMarkdown
R
updated 4 days ago by 39k • written 3.8 years ago by ★ 2.3k
2
votes
0
replies
869
views
News: Metagenomics and Metabarcoding Course @ Edinburgh Genomics
metagenomics metabarcoding course workshop
updated 5 days ago by 39k • written 3.9 years ago by ▴ 40
2
votes
0
replies
492
views
News: 2-day Nextflow training course in Berlin
workflow nextflow
updated 1 hour ago by 39k • written 3.4 years ago by ★ 2.3k
2
votes
0
replies
661
views
News: Interested in learning more about Bayesian Statistics?
Bayesian-Statistics R Stan
updated 22 hours ago by 39k • written 3.5 years ago by ★ 2.3k
2
votes
0
replies
785
views
News: R/Bioconductor for Mass Spectrometry and Proteomics course in Berlin
R Proteomics Bioconductor
updated 4 days ago by 39k • written 3.8 years ago by ★ 2.3k
2
votes
0
replies
628
views
News: Eukaryotic Metabarcoding course in Berlin. Last places left.
JAMP R metabarcoding Obitools
updated 23 hours ago by 39k • written 3.4 years ago by ★ 2.3k
2
votes
0
replies
612
views
News: Course in Berlin: Data visualization IN R with ggplot2
dataviz R ggplot2 tidyverse
updated 1 day ago by 39k • written 3.5 years ago by ★ 2.3k
2
votes
0
replies
588
views
News: Population Genomics course
R SNP next-gen
updated 50 minutes ago by 39k • written 3.3 years ago by ★ 2.3k
2
votes
0
replies
1.1k
views
News: Introduction to genome-wide association studies (GWAS)
Unix GWAS R
updated 1 hour ago by 39k • written 3.4 years ago by ★ 2.3k
2
votes
0
replies
609
views
News: Speciation Genomics course in Canada (September 2019)
R SNP next-gen
updated 6 days ago by 39k • written 4.0 years ago by ★ 2.3k
2
votes
0
replies
1.3k
views
News: UCSC Genome Browser JSON API
ucsc json api
updated 6 days ago by 39k • written 4.0 years ago by 154k
2
votes
0
replies
777
views
News: Interested in learning more about GWAS? Course in Canada this September
GWAS pipeline
updated 6 days ago by 39k • written 3.9 years ago by ★ 2.3k
2
votes
0
replies
881
views
News: Summer Courses @ Edinburgh Genomics
workshop training courses python RNA-Seq
updated 6 days ago by 39k • written 4.0 years ago by ▴ 40
2
votes
0
replies
844
views
News: Long-read nanopore Sequencing course
software-error Long-reads assembly nanopore Pacbio
updated 23 hours ago by 39k • written 3.4 years ago by ★ 2.3k
2
votes
0
replies
685
views
News: RNAseq data analysis with R and Bioconductor
R RNA-Seq RNA Bioconductor
updated 1 hour ago by 39k • written 3.4 years ago by ★ 2.3k
2
votes
0
replies
1.6k
views
News: Course - Metabolomics - Berlin, 25-29 November 2019
Metabolomics R Bioconductor
updated 6 days ago by 39k • written 3.9 years ago by ★ 2.3k
2
votes
0
replies
720
views
News: Bioinformatic courses in Canada (Quebec City) this September
Unix Genomics GWAS R Python
updated 5 days ago by 39k • written 3.9 years ago by ★ 2.3k
2
votes
0
replies
666
views
News: Course: RNA-seq Analyses in non-model organisms (Berlin 11-15 November 2019)
gene RNA-Seq next-gen
updated 6 days ago by 39k • written 4.0 years ago by ★ 2.3k
2
votes
0
replies
875
views
News: Introduction to GWAS Workshop- Canada 9-13 September 2019
GWAS
updated 6 days ago by 39k • written 4.0 years ago by ★ 2.3k
2
votes
0
replies
876
views
News: precisionFDA and Georgetown-ICBI are launching the Brain Cancer Predictive Modeling and Biomarker Discovery Challenge!
brain-tumor artificial-intelligence biomarkers
updated 1 day ago by 39k • written 3.6 years ago by ▴ 150
2
votes
0
replies
757
views
News: Course - Landscape Genomics. Berlin
Genomics R
updated 1 day ago by 39k • written 3.7 years ago by ★ 2.3k
1
vote
0
replies
566
views
News: Cellosaurus release 33 is available
knowledgebase cell-line
updated 23 hours ago by 39k • written 3.5 years ago by ▴ 110
1
vote
0
replies
1.1k
views
News: Advanced Sequencing Technologies & Bioinformatics Analysis Course at CSHL: November 3 - 15, 2020
course sequencing workshop
updated 2 hours ago by 39k • written 3.4 years ago by 20k
1
vote
0
replies
608
views
News: Bioinformatics for Precision Oncology 2020 Program
cancer-biology RNA-Seq cancer
updated 1 hour ago by 39k • written 3.4 years ago by ▴ 10
1
vote
0
replies
572
views
News: The precisionFDA and Georgetown-ICBI Brain Cancer Predictive Modeling and Biomarker Discovery Challenge is now live!
brain-tumor machine-learning biomarkers
updated 1 day ago by 39k • written 3.6 years ago by ▴ 150
1
vote
0
replies
624
views
News: Course: Speciation Genomics in Canada - Quebec City, 2-6 September 2019
snp R next-gen
updated 6 days ago by 39k • written 4.0 years ago by ▴ 40
1
vote
0
replies
700
views
News: Free Ensembl browser and REST API workshops: Hinxton, Cambridge, UK, 15/16 October 2019
training-course Ensembl workshop
updated 4 days ago by 39k • written 3.7 years ago by ▴ 330
1
vote
0
replies
528
views
News: New precisionFDA data science challenge: Help advance postmarket surveillance techniques for FDA regulated products
R
updated 1 hour ago by 39k • written 3.4 years ago by ▴ 150
1
vote
0
replies
591
views
News: Cellosaurus release 32 is available
knowledgebase database cell-line
updated 4 days ago by 39k • written 3.8 years ago by ▴ 110
1
vote
0
replies
884
views
News: BBSRC (UK funding body) Review of data intensive biology in the UK
questionnaire UK
updated 6 days ago by 39k • written 4.0 years ago by 17k
1
vote
2
replies
578
views
News: Ensembl reduced functionality, early March
ensembl
updated 1 hour ago by 39k • written 3.4 years ago by 23k
148 results • Page 1 of 3
Recent Votes
Answer: CHiP-Seq Questions
Answer: Diff Bind Questions
Comment: ChatGPT optimized for bioinformatics questions
Answer: Diff Bind Questions
Answer: CHiP-Seq Questions
Comment: ChatGPT optimized for bioinformatics questions
Comment: ChatGPT optimized for bioinformatics questions
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Supporter to Sasha ▴ 280
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Recent Replies
Answer: Differences in GTF files hg19 and hg38 by GenoMax 130k
Not sure where you got your GTF for GRCh38 from but [**one from GENCODE**][1] has the level info you are looking for. chr1 HAVANA…
Comment: CHiP-Seq Questions by B.N. • 0
Thank you for the suggestions Dr. Stark.
Comment: Diff Bind Questions by B.N. • 0
Thank you so much for the insight Dr. Stark!
Comment: Is PanCan data microarray or rna-seq by GenoMax 130k
This particular example ("GeneChip") is an array. Early TCGA samples may have been done using arrays and later sequenced. Appears to be thi…
Comment: ChatGPT optimized for bioinformatics questions by Sasha ▴ 280
Hoping to add functionality around this. Stay tuned. Big problem for our space that needs to be resolved.
Comment: Is PanCan data microarray or rna-seq by solarchan7 • 0
Hi, so this [paper](https://www.nature.com/articles/s41598-019-45165-4) uses the TCGA dataset and in the supplementary information, it ment…
Comment: counts matrix should be numeric, currently it has mode: character when using a c by Darked89 4.4k
Since the input file is named `normalized.csv` and the values look like floats most likely the counts have been already normalized somehow.
Comment: Embryo transcriptome by Basti ★ 1.6k
https://www.ebi.ac.uk/ena/browser/view/PRJEB11202 https://www.ebi.ac.uk/ena/browser/view/PRJNA153427
Comment: ChatGPT optimized for bioinformatics questions by ATpoint 72k
How is it trained on PubMed/papers? One major drawback of ChatGPT is that it wildly makes up papers that do not even exist but with great c…
Answer: sgRNA design by ATpoint 72k
gRNAs are single-stranded and by this they have a strand-specificity (depends where the PAM is) and that gives them an orientation.
Answer: counts matrix should be numeric, currently it has mode: character when using a c by ATpoint 72k
You have commas as decimal delimiters which interpreted as text. Just replace by dot and make numeric: ```r d <- data.frame(A=c("1,2", "3,…
Comment: snps from empty well, Illumina Sequencing by GenoMax 130k
> I receive illumina sequencing files with 96 wells, our lab leaves one > well empty. When I process the files with a SNP calling pipeline …
Answer: counts matrix should be numeric, currently it has mode: character when using a c by Darked89 4.4k
You can try: counts_data <- read.csv2("normalized.csv", header = TRUE) But as far as I know DESeq2 requires raw counts as inpu…
Comment: Is there bioinformatics tool to check cross hybridization between primers and pr by Tawny ▴ 180
Was a tool ever found for this? I am curious.
Comment: Is the Kruskal-Wallis test appropriate for genomic distances? by ATpoint 72k
I never used it myself so far, but I would proably look into https://bioconductor.org/packages/devel/bioc/vignettes/nullranges/inst/doc/nul…
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