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12 results • Page
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News:
Successful NCBI NIAID Codeathon on VCF Files in SARS-CoV-2 Genomics
NCBI
Codeathon
1 day ago by
PeterC_NCBI
▴ 330
1
vote
0
replies
88
views
News:
Online Training - Bioinformatics Pipeline Development with Nextflow (November 15-17, 2023)
nextflow
automation
pipeline
development
23 hours ago by
David Langenberger
10k
0
votes
1
reply
89
views
News:
EMBL-EBI virtual course | Introduction to RNA-seq and functional interpretation
RNA-seq
updated 15 hours ago by
Ram
40k • written 17 hours ago by
Rebecca
• 0
0
votes
0
replies
109
views
News:
course - Population Genomics Using Ancient DNA Data
Bioinformatics
PopulationGenomics
Genomics
aDNA
5 days ago by
carlopecoraro2
★ 2.3k
0
votes
2
replies
547
views
News:
The Practice of RADseq: Population Genomics Analysis with Stacks (RADS02) Early bird deadline approaching - 20th September
population-genomics
radseq
stacks
updated 3 days ago by
Dave Carlson
★ 1.4k • written 4 days ago by
oliverhooker
▴ 110
0
votes
0
replies
129
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News:
Online Course - A Practical Introduction to NGS Data Analysis - October 23-25, 2023
DNA-seq
RNA-seq
Workshop
updated 3 days ago by
Ram
40k • written 3 days ago by
David Langenberger
10k
0
votes
0
replies
119
views
News:
Course: Data Manipulation and Visualisation with Python
Python
Data-Visualization
Data-Manipulation
updated 3 days ago by
Ram
40k • written 3 days ago by
carlopecoraro2
★ 2.3k
0
votes
0
replies
125
views
News:
Genomic Prediction course
Bioinformatics
GWAS
GenomicPrediction
5 days ago by
carlopecoraro2
★ 2.3k
0
votes
0
replies
126
views
News:
Course - GLMMs in R
GLMM
Mixed-Models
updated 4 days ago by
Ram
40k • written 4 days ago by
carlopecoraro2
★ 2.3k
0
votes
0
replies
126
views
News:
Introduction to Nextflow (2 seats left)
Nextflow
Workflow
Reproducibility
updated 4 days ago by
Ram
40k • written 4 days ago by
carlopecoraro2
★ 2.3k
0
votes
0
replies
106
views
News:
Workshop - Single-Cell RNA-Seq Data Analysis: A Practical Introduction (November 8-10, 2023 in Berlin)
workshop
scRNA-Seq
RNA-Seq
single-cell
updated 1 day ago by
Ram
40k • written 1 day ago by
David Langenberger
10k
0
votes
0
replies
109
views
News:
Research Breakthrough in Identifying Viral Escape Mutations for Improved Therapeutic Design
sequence-analysis
sars-cov-2
spike-protein
updated 1 day ago by
Ram
40k • written 2 days ago by
Prem
• 0
12 results • Page
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Recent Votes
Deepvariant variant calling by singularity
C: Google announces DeepVariant
Answer: How to find out what adapters to remove after FastQC of RNAseq data?
Answer: How to DESeq2 using miRNA data obtained using TCGAbiolinks
Comment: scRNAseq Differential expression analysis
Answer: Trimmomatic .jar not included anymore?
Comment: Find potential important genes from bulk-RNA seq experiment
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Popular Question
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Emily
▴ 30
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Bogdan
★ 1.4k
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paria
▴ 70
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Ahmed.waraky
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Recent Replies
Answer: How to create structural variants ground truth for alignment of two long-read ge
by
Christophe
• 0
Hi, D-genies is using minimap2 to align both genomes and minimap2 is chaining local alignments to produce a global one. If the SV are sm…
Comment: Ties in reranked list
by
Hamza
• 0
In this case there are no results in my fgsea object unfortunately
Comment: Genes with promoter and enhancer regions as GTF
by
abis.1819104
• 0
how to generate promoters.bed and enhancer.bed files from gtf file
Comment: Deepvariant variant calling by singularity
by
jeffhsu3
• 0
I am having a similar issue was this ever resolved? Getting this error: I0922 22:22:08.794076 140356687390528 make_examples_core.py:257] O…
Comment: Modify the code to take most abundant reads from a cluster and process it.
by
Mensur Dlakic
★ 24k
Probably there are people here for whom this is a trivial task, and maybe you will luck out and one of them will write a solution for you. …
Comment: Assistance with Fungal Genome Annotation Using Maker and BLAST
by
Mensur Dlakic
★ 24k
I think this will work. For .dat -> .fas conversion it may be helpful to download a utility called `esl-reformat` which is a part of the HM…
Comment: Highly inflated p-values in GWAS by regenie
by
cwwong13
▴ 20
Thanks @sushiroll I was told to use [standard GWAS statistical significance cutoff][1] which is 5e-8. I know this might be too "nonconserva…
Comment: Ties in reranked list
by
Ram
40k
Please note: Warning != Error.
Comment: Highly inflated p-values in GWAS by regenie
by
cwwong13
▴ 20
Thanks @lchart and sorry for the confusion. Covariates like age and sex were adjusted for when the phenotypes were pre-processed, and the d…
Comment: Understanding TCGA barcodes with dot in the fieldname
by
Ram
40k
I think the two components to this file name are `TCGA-AK-3460` and `95FC84F5-4FB3-4CE7-ACD0-C7E0D8F03DD7.PDF`. The PDF has a UID and it's …
Comment: scRNAseq Differential expression analysis
by
Ram
40k
I agree that no important result should be disregarded owing to bias but I'd by lying if I said what I have heard and seen about Lior has n…
Comment: scRNAseq Differential expression analysis
by
dsull
★ 4.6k
I try contributing to biostars (I'm on here every day trying to assist members of the community), helping others, citing important results,…
Comment: scRNAseq Differential expression analysis
by
dsull
★ 4.6k
He (or rather, the person whom he cited -- Nikolai Slavov) has identified a major problem with differential gene expression mathematics -- …
Comment: Find potential important genes from bulk-RNA seq experiment
by
Chris
▴ 180
I had been looking a mentor for more than 1.5 years and still no luck. I post questions almost everyday include weekend and the moderator h…
Answer: scRNAseq Differential expression analysis
by
ATpoint
76k
Pseudobulk methods, so essentially mimicking bulk differential expression is preferred as counts are no longer sparse and noise gets reduce…
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