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895 results • Page 3 of 18
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News: Course - Genomics with R and Bioconductor - Berlin
R Bioconductor
updated 10 months ago by 43k • written 4.8 years ago by ★ 2.5k
3
votes
0
replies
1.4k
views
News: NIH Strategic Plan for Data Science
nih data-science
updated 11 months ago by 43k • written 6.1 years ago by 141k
3
votes
0
replies
1.8k
views
News: New web BLAST default parameters and search limits are now in place at NCBI
www-blast blast ncbi
updated 10 months ago by 43k • written 3.8 years ago by 141k
3
votes
2
replies
543
views
News: Announcement: Research Topic "Mechanistic, Machine Learning and Hybrid Models of the 'Other' Endocrine Regulatory Systems in Health and Disease", Vol…
mathematical-modelling endocrinology ML systems-biology machine-learning
21 days ago by Johannes W. Dietrich • 0
3
votes
0
replies
1.9k
views
News: Deep learning in GATK4
GATK4 deep-learning GATK
updated 11 months ago by 43k • written 6.3 years ago by ★ 1.2k
3
votes
5
replies
1.3k
views
News: Ensembl Release 104 and newer GTF files no longer have genes sorted by position
Ensembl GTF
updated 7 months ago by ▴ 120 • written 17 months ago by ▴ 30
3
votes
2
replies
682
views
News: Participate in a NCBI/NIAID Virtual Codeathon: VCF Files for Population Genomics, Jul 31 - Aug 4, 2023
VCF SARS-CoV-2 NCBI Codeathon
11 months ago by PeterC_NCBI ▴ 410
3
votes
0
replies
535
views
News: gnomAD v4 released
gnomad
5 months ago by Pierre Lindenbaum 161k
3
votes
0
replies
1.3k
views
News: Nextflow Training Course
Pipeline Workflow NEXTFLOW
updated 10 months ago by 43k • written 4.5 years ago by ★ 2.5k
3
votes
1
reply
948
views
News: Results are now available for the precisionFDA NCI-CPTAC Multi-omics Enabled Sample Mislabeling Correction Challenge!
precisionFDA NCI challenge algorithm multi-omics
updated 10 months ago by 43k • written 5.2 years ago by ▴ 60
3
votes
0
replies
804
views
News: Phylogenomics course in Berlin
snp R next-gen
updated 10 months ago by 43k • written 4.4 years ago by ★ 2.5k
2
votes
0
replies
1.7k
views
News: Course - Metabolomics - Berlin, 25-29 November 2019
Metabolomics R Bioconductor
updated 10 months ago by 43k • written 4.8 years ago by ★ 2.5k
2
votes
0
replies
638
views
News: Introduction to RMarkdown
R
updated 10 months ago by 43k • written 4.7 years ago by ★ 2.5k
2
votes
0
replies
964
views
News: Registration open for Galaxy Community Conference (GCC) 2019
galaxy
updated 10 months ago by 43k • written 5.1 years ago by 104k
2
votes
0
replies
932
views
News: R/Bioconductor for Mass Spectrometry and Proteomics course in Berlin
R Proteomics Bioconductor
updated 10 months ago by 43k • written 4.7 years ago by ★ 2.5k
2
votes
0
replies
1.3k
views
News: BIOINFORMATICS SERVICES PROVIDER - BIO KNOWLEDGE LAB, S.L.
bioinformatics-services
updated 11 months ago by 43k • written 5.5 years ago by ▴ 20
2
votes
0
replies
693
views
News: Population Genomics course
R SNP next-gen
updated 10 months ago by 43k • written 4.2 years ago by ★ 2.5k
2
votes
0
replies
845
views
News: The BioCompute Object App-a-thon is now live!
app-a-thon pipeline precisionFDA
updated 10 months ago by 43k • written 4.9 years ago by ▴ 150
2
votes
2
replies
1.4k
views
News: GeNets: a unified web platform for network-based genomic analyses
networks pathways RNA-Seq visualization
updated 11 months ago by 43k • written 5.8 years ago by ★ 5.2k
2
votes
0
replies
1.5k
views
News: UCSC Genome Browser JSON API
ucsc json api
updated 10 months ago by 43k • written 4.8 years ago by 161k
2
votes
0
replies
1.6k
views
News: 4th Annual Viral Genomics & Bioinformatics Training Course (20-24 August 2018)
next-gen virus genomics course
updated 11 months ago by 43k • written 6.3 years ago by ▴ 60
2
votes
3
replies
2.1k
views
News: PDX Models: Tumor-stroma interaction
transcriptome pdx R ChIP-Seq
updated 11 months ago by 43k • written 6.7 years ago by ▴ 70
2
votes
1
reply
1.1k
views
News: PrecisionFDA and NCI-CPTAC Mislabeling Challenge is Launching on September 24th!
precision-medicine NCI FDA proteomics.RNA
updated 11 months ago by 43k • written 5.6 years ago by ▴ 150
2
votes
0
replies
1.0k
views
News: Programmatic access uniprot.org: Deprecation of legacy REST URLs /batch and /mapping - please replace by /uploadlists
UniProt
updated 11 months ago by 43k • written 5.9 years ago by ★ 2.4k
2
votes
0
replies
111
views
News: Online Course Introduction to Network Analysis and Modelling
Python Network-Analysis
updated 8 days ago by 43k • written 9 days ago by ▴ 70
2
votes
0
replies
2.1k
views
News: Workshop 'Analysis of single cell RNA-seq data' . 5-9 February 2018
RNA-Seq scRNAseq
updated 11 months ago by 43k • written 6.5 years ago by ★ 2.5k
2
votes
0
replies
662
views
News: Online course - low-coverage whole-genome sequencing data analysis
SNP
updated 10 months ago by 43k • written 3.9 years ago by ★ 2.5k
2
votes
0
replies
514
views
News: ONLINE COURSE-Advanced programming in R
R
updated 10 months ago by 43k • written 4.0 years ago by ★ 2.5k
2
votes
0
replies
653
views
News: Online course - Introduction to Machine Learning in R -13-16 July 2020
Machine-Learning R
updated 10 months ago by 43k • written 4.0 years ago by ★ 2.5k
2
votes
6
replies
2.9k
views
News: Master in integrated systems biology / Luxembourg
systems-biology Masters-course
updated 11 months ago by 43k • written 6.7 years ago by ▴ 130
2
votes
2
replies
509
views
News: Unix and Shell Scripting for Bioinformatics course
Bash Unix Shell-Scripting
4 months ago by carlopecoraro2 ★ 2.5k
2
votes
0
replies
1.2k
views
News: Coming Soon precisionFDA Hidden Treasures Warm Up Challenge, July 18 - September 12, 2017
next-gen-sequencing
updated 11 months ago by 43k • written 6.8 years ago by ▴ 90
2
votes
0
replies
910
views
News: Interested in learning more about GWAS? Course in Canada this September
GWAS pipeline
updated 10 months ago by 43k • written 4.8 years ago by ★ 2.5k
2
votes
0
replies
540
views
News: Comparative Genomics course in Berlin
Assembly next-gen-sequencing alignment
updated 10 months ago by 43k • written 4.1 years ago by ★ 2.5k
2
votes
0
replies
937
views
News: Course: Approaches and Computational tools for CRISPR Genome editing
Genome-Editing CRISPR
updated 10 months ago by 43k • written 4.8 years ago by ★ 2.5k
2
votes
2
replies
1.6k
views
News: User-friendly Bioinformatics From RNA Seq to Biological Interpretation
machine-learning RNA-seq
updated 11 months ago by 43k • written 5.7 years ago by ▴ 10
2
votes
0
replies
698
views
News: Interested in Machine Learning?
Machine-Learning R
updated 10 months ago by 43k • written 3.9 years ago by ★ 2.5k
2
votes
0
replies
846
views
News: Bioinformatic courses in Canada (Quebec City) this September
Unix Genomics GWAS R Python
updated 10 months ago by 43k • written 4.7 years ago by ★ 2.5k
2
votes
0
replies
752
views
News: Eukaryotic Metabarcoding course in Berlin. Last places left.
JAMP R metabarcoding Obitools
updated 10 months ago by 43k • written 4.3 years ago by ★ 2.5k
2
votes
0
replies
765
views
News: Interested in learning more about Bayesian Statistics?
Bayesian-Statistics R Stan
updated 10 months ago by 43k • written 4.4 years ago by ★ 2.5k
2
votes
0
replies
567
views
News: Introduction to NGS data analysis - ONLINE 7th-11th September 2020
Assembly RNA-Seq next-gen-sequencing
updated 10 months ago by 43k • written 3.9 years ago by ★ 2.5k
2
votes
0
replies
813
views
News: Landscape Genomics course ONLINE
snp R next-gen
updated 10 months ago by 43k • written 4.0 years ago by ★ 2.5k
2
votes
0
replies
541
views
News: Registration open for Nextflow Summit 2023, and free online Nextflow / nf-core training
nextflow
9 months ago by Marcel Ribeiro-Dantas ▴ 470
2
votes
2
replies
2.6k
views
News: Interview Dealing with RADseq data: some tips from our instructors
NGS RADseq
updated 11 months ago by 43k • written 6.5 years ago by ★ 2.5k
2
votes
0
replies
720
views
News: Speciation Genomics course in Canada (September 2019)
R SNP next-gen
updated 10 months ago by 43k • written 4.8 years ago by ★ 2.5k
2
votes
0
replies
3.0k
views
News: 2nd Edition of the Biostar Handbook. New online course starts now.
biostar-handbook
updated 10 months ago by 43k • written 5.2 years ago by 100k
2
votes
0
replies
635
views
News: Tailored online courses in R
Machine-Learning R tidyverse
updated 10 months ago by 43k • written 4.0 years ago by ★ 2.5k
2
votes
2
replies
1.4k
views
News: Course: Applied Statistics and Bioinformatics with R and Bioconductor. (Berlin, 22-26 January 2018)
R next-gen-sequencing
updated 11 months ago by 43k • written 6.4 years ago by ★ 2.5k
2
votes
1
reply
872
views
News: Gene set enrichment and pathway analysis in HT data
next-gen-sequencing RNA-Seq
updated 10 months ago by 43k • written 5.2 years ago by ★ 2.5k
2
votes
1
reply
1.6k
views
News: BIOSG17 Workshop on High Throughput Computing in Bioinformatics/Biomedicine using OSG
Workshop OSG Biomedicine HTC
updated 11 months ago by 43k • written 6.7 years ago by ▴ 10
895 results • Page 3 of 18
Recent Votes
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach
Answer: Ubuntu storage space is decreasing automatically
Comment: How can I retrieve wheat lysine non-acetylated sequences from the UniProt databa
Answer: How can I retrieve wheat lysine non-acetylated sequences from the UniProt databa
The majority of the sequences in Trinity ID do not start from start codons. Can the sequences still be used for primer design and validation?
Answer: Cellranger count error: Input FASTQ file ended prematurely
Answer: RNA seq differential expression analysis
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Recent Replies
Comment: bam merging for archaic samples by Matteo Ungaro ▴ 100
@Pierre Lindenbaum I see. So, I can actually manipulate just one single RG tag at the time with `samtools`? Which flag should I use, or sho…
Comment: bam merging for archaic samples by Pierre Lindenbaum 161k
RG tag "L9302" is missing the the BAM header. You should have something like this in the BAM header ``` @RG ID:L9302 SM:L9302 ``` may be…
Answer: Filtering sam or bam file with maximum matching region by Pierre Lindenbaum 161k
> . Is there any way to find through sam or bam file that which chromosomal position are maximum reads aligning to? samtools depth i…
Comment: Calculate Radius of Gyration [python 3] by ndm1096 • 0
Hello Franco. I am very much new with bioinformatics but I have been tasked with studying the radius of gyration of a timeseries of a prote…
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach by BioinfGuru ★ 1.7k
That makes a lot more sense. Thank you.
Answer: Removing Illumina microarray probes with no expression HumanHT-12v4 by Gordon Smyth ★ 7.0k
Type ``` help("read.idat") ``` and read the example at the bottom of the page, which shows you how to set the `other$Detection` component o…
Comment: Free/open source 23andme-like analysis by swbarnes2 14k
Accurately assessing a few QC metrics is trivially easy. Assessing the significance of variants in a clinically responsible way is really…
Comment: Cellranger count error: Input FASTQ file ended prematurely by swbarnes2 14k
If _1 and _2 really are the same library, you should rename the fastqs, or make symlinks, such that they have the same sample name, but dif…
Comment: Cellranger count error: Input FASTQ file ended prematurely by ATpoint 81k
Just delete the index read files. They just take up space and will never be used.
Comment: Adding CB tag to bam file by swbarnes2 14k
Yes. Why wouldn't you use, say, AddOrReplaceReadsGroups?
Comment: Ciriquant not configuring hisat2 indexed files by Atul K. • 0
Thank you. Decreased the threads to 2 (changed the threads: 2 in the config file; but it was somehow using 4). It did run for sometime but …
Answer: GTF file from Stringtie to R Studio for either Ballgown or DESeq2 by Ram 43k
See this section on how to use tximport to import StringTie output for DESeq2 processing: https://bioconductor.org/packages/devel/bioc/vign…
Comment: how to find genes that are significantly expressed in brain cortex samples by Ram 43k
Can you explain the normalization or give me a link that describes it, please? Comparison across samples will always be caveated as RNA-seq…
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach by Ram 43k
Sorry, I see how harsh I come across. It's not good practice to use multiple versions of R in the same project. I can understand legacy pro…
Answer: MEGA Analysis Issue on High-Performance Computer by Mensur Dlakic ★ 27k
> I have ensured that I am using the latest version of MEGA and that other applications are not consuming excessive resources during the an…
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