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1,000 results • Page
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Votes
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714
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159
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104k
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100 follow
News:
The Biostar Handbook. A bioinformatics e-book for beginners.
training
tutorial
News
handbook
updated 4 months ago by
Biostar
1.5k • written 6.1 years ago by
Istvan Albert
96k
122
votes
42
replies
8.6k
views
21 follow
News:
Help Make Biostar Better! Add Your Feedback, Opinions And Suggestions.
biostar
meta
News
updated 6.1 years ago by
jonasmst
▴ 400 • written 10.2 years ago by
Istvan Albert
96k
81
votes
39
replies
5.9k
views
11 follow
News:
State Of Biostar - Future Directions (January 2013)
biostar
News
updated 10.0 years ago by
João Rodrigues
★ 2.5k • written 10.1 years ago by
Istvan Albert
96k
59
votes
31
replies
3.3k
views
12 follow
News:
Example of how bioinformaticians can publish in Scientific Reports (by nature publishing group) using publicly available NGS data
publication
NGS
News
updated 6.1 years ago by
helene
▴ 50 • written 6.1 years ago by
David Langenberger
9.8k
57
votes
24
replies
5.4k
views
14 follow
News:
Join us in building a bioinformatics resource: The Biostar Handbook
biostar-handbook
updated 4 months ago by
Ram
37k • written 7.4 years ago by
Istvan Albert
96k
54
votes
24
replies
3.1k
views
12 follow
News:
Big news from Microsoft. BASH on windows.
windows
News
written 6.8 years ago by
poisonAlien
★ 3.1k
50
votes
17
replies
3.2k
views
News:
Biostars 3.0 is now under testing. It has groups, charms and other interesting features.
biostar
meta
updated 6 months ago by
Ram
37k • written 7.8 years ago by
Istvan Albert
96k
48
votes
13
replies
24k
views
10 follow
News:
The New Grch38 Human Genome Browser Has Arrived!
ucsc
assembly
GRCh38
hg38
updated 12 months ago by
Ram
37k • written 8.9 years ago by
Giovanni M Dall'Olio
27k
45
votes
16
replies
4.8k
views
12 follow
News:
Google announces DeepVariant
genome
deep learning
google
News
updated 5.1 years ago by
Chris Miller
22k • written 5.2 years ago by
Hussain Ather
▴ 970
45
votes
19
replies
5.5k
views
8 follow
News:
Gamestorming For Bioinformatics
News
10.3 years ago by
Giovanni M Dall'Olio
27k
33
votes
5
replies
3.3k
views
News:
FINAL CALL: Epigenetics Workshop - DNA Methylation Data Analysis (some last seats available)
Workshop
Epigenetics
Bisulfite Sequencing
News
updated 6.2 years ago by
David Langenberger
9.8k • written 6.7 years ago by
Adele Feuerstein
▴ 460
32
votes
6
replies
12k
views
7 follow
News:
Ncbi Releases Entrez Direct, The Entrez Utilities On The Unix Command Line
ncbi
linux
command-line
entrez
pubmed
genbank
News
updated 15 months ago by
Ram
37k • written 9.0 years ago by
Pierre Lindenbaum
152k
31
votes
4
replies
6.0k
views
News:
Rosalind: A Novel Bioinformatics Education Platform
bioinformatics
education
News
10.3 years ago by
phcompeau
▴ 310
27
votes
7
replies
3.1k
views
News:
The Biostar Swarm: A Visualization
biostar
updated 14 months ago by
Ram
37k • written 10.0 years ago by
Istvan Albert
96k
27
votes
9
replies
3.5k
views
News:
OSX 10.11 released 30th Sep will be "rootless"
mac
osx
updated 4 months ago by
Ram
37k • written 7.3 years ago by
John
13k
25
votes
7
replies
2.3k
views
6 follow
News:
Who qualifies to be a bioinformatician?
resume
bioinformatician
vc
updated 6 months ago by
Ram
37k • written 7.8 years ago by
Pierre Lindenbaum
152k
25
votes
7
replies
5.7k
views
News:
Pubmed Commons : A System That Enables Researchers To Share Their Opinions About Scientific Publications
ncbi
pubmed
News
9.3 years ago by
Pierre Lindenbaum
152k
24
votes
7
replies
4.0k
views
News:
#Bioinformatics Crowdcoding
News
updated 8.8 years ago by
Rad
▴ 800 • written 9.5 years ago by
Pierre Lindenbaum
152k
24
votes
21
replies
5.6k
views
9 follow
News:
Misunderstood parameter of NCBI BLAST
alignment
blast
News
4.3 years ago by
Farbod
★ 3.3k
23
votes
7
replies
3.9k
views
News:
Research accounts on GitHub
github
News
git
updated 16 months ago by
Ram
37k • written 8.7 years ago by
Pierre Lindenbaum
152k
22
votes
10
replies
4.9k
views
News:
samtools/bcftools/htslib 1.0 released
htslib
samtools
bcftools
updated 13 months ago by
Ram
37k • written 8.5 years ago by
rtliu
★ 2.2k
22
votes
3
replies
2.6k
views
News:
Biostar: 10,000 Question Milestone
News
updated 9.7 years ago by
Medhat
9.5k • written 9.7 years ago by
Istvan Albert
96k
22
votes
9
replies
5.9k
views
News:
Epigenetics Workshop - DNA Methylation Data Analysis
bisulfite-sequencing
workshop
epigenetics
updated 25 days ago by
Ram
37k • written 7.6 years ago by
David Langenberger
9.8k
21
votes
11
replies
8.7k
views
6 follow
News:
NovaSeq from Illumina (updated info)
illumina
NovaSeq
News
5.3 years ago by
GenoMax
125k
21
votes
7
replies
7.0k
views
News:
Survey: Rna-Seq Analysis For Differential Gene/Transcript Expression [Updated With Results]
rna-seq
alignment
differential
gene
transcript
News
10.2 years ago by
bodhisattvax
▴ 250
21
votes
16
replies
5.0k
views
6 follow
News:
Pandora's Toolbox - a collection of bioinformatics programs
Assembly
alignment
RNA-Seq
updated 10 months ago by
Ram
37k • written 8.1 years ago by
ugly.betty77
★ 1.1k
20
votes
3
replies
2.3k
views
News:
Nature Comment: Core services: Reward bioinformaticians
career-path
updated 7 months ago by
Ram
37k • written 7.8 years ago by
rtliu
★ 2.2k
19
votes
11
replies
6.3k
views
News:
Solid Software Tools: Denovo Assembly/Xsq Tools Pipeline Mirrored At Biostar
News
updated 9 months ago by
Ram
37k • written 10.4 years ago by
Istvan Albert
96k
19
votes
4
replies
1.9k
views
News:
How to analyze NGS data: An overview of nine different IT solutions
NGS
RNA-Seq
DNA-Seq
News
updated 6.3 years ago by
Lars
▴ 910 • written 6.3 years ago by
David Langenberger
9.8k
18
votes
3
replies
2.1k
views
News:
LAST CALL: Next-Generation Sequencing Data Analysis: A Practical Introduction (Frankfurt, Germany) - 2 seats left
DNA-Seq
NGS
Workshop
Variant-Calling
updated 6 months ago by
Ram
37k • written 5.9 years ago by
David Langenberger
9.8k
18
votes
11
replies
3.3k
views
News:
Full Genome Sequencing Service 30x whole human genome sequencing for $3,490 (project cancelled)
genome
next-gen-sequencing
updated 12 months ago by
Ram
37k • written 8.4 years ago by
hcatlin
▴ 100
17
votes
7
replies
8.4k
views
News:
Upcoming NGS Workshop: A Beginner's Guide to NGS Data Analysis
workshop
Assembly
transcriptomics
RNA-Seq
updated 10 months ago by
Ram
37k • written 8.2 years ago by
David Langenberger
9.8k
17
votes
9
replies
3.2k
views
News:
My Ncbi Curriculum Vitae Web Application: Sciencv
ncbi
job
News
updated 9.3 years ago by
Giovanni M Dall'Olio
27k • written 9.3 years ago by
Pierre Lindenbaum
152k
17
votes
6
replies
8.3k
views
News:
Final registration deadline: September 15th - Bioinformatics Hands-On NGS Data Analysis Workshops 2014
News
methylation
rna-seq
updated 16 months ago by
Ram
37k • written 8.8 years ago by
David Langenberger
9.8k
16
votes
2
replies
4.4k
views
News:
Samtools/htslib/bcftools 1-3 released
samtools
htslib
bcftools
News
updated 6.4 years ago by
xing
▴ 10 • written 7.1 years ago by
Devon Ryan
102k
15
votes
4
replies
2.2k
views
News:
Call For Nominations: 2013 Benjamin Franklin Award
News
updated 9.9 years ago by
lh3
33k • written 10.0 years ago by
Pierre Lindenbaum
152k
15
votes
2
replies
10k
views
News:
Breaking News - Illumina MiniSeq
next-gen-sequencing
updated 6 months ago by
Ram
37k • written 7.1 years ago by
IV
★ 1.3k
15
votes
4
replies
3.8k
views
News:
Workshop: Genomic Data Visualization and Interpretation (Berlin, Germany)
R
next-gen
dataviz
GenVisR
News
5.9 years ago by
carlopecoraro2
★ 2.2k
15
votes
3
replies
6.3k
views
News:
Top Bioinformatics Contributions Of 2013
bioinformatics
News
updated 9.0 years ago by
Gjain
5.7k • written 9.2 years ago by
ugly.betty77
★ 1.1k
15
votes
18
replies
7.2k
views
6 follow
News:
New Free Community Tutorial Website For Bioinformatics Learning
chip-seq
snp
News
rna-seq
genome
updated 16 months ago by
Ram
37k • written 9.5 years ago by
rob234king
▴ 610
14
votes
11
replies
2.2k
views
6 follow
News:
Announcing bioSyntax: Syntax highlighting for biological files
bioinformatics
computational biology
News
updated 4.8 years ago by
ababaian
▴ 50 • written 5.1 years ago by
anicet.ebou
▴ 170
14
votes
5
replies
3.0k
views
News:
Science Article On Social Influence Bias On Voting Patterns ("Herding") With Impact On Biostar.
biostar
meta
News
updated 9.5 years ago by
Mary
11k • written 9.5 years ago by
Michael Dondrup
52k
14
votes
4
replies
3.0k
views
News:
FULL: NGS Data Analysis Workshop for Beginners in Munich (29 June - 1 Juli 2016)
RNA-Seq
next-gen
NGS
updated 6 months ago by
Ram
37k • written 7.0 years ago by
David Langenberger
9.8k
14
votes
6
replies
6.4k
views
News:
FINAL CALL: NGS Workshop - A Beginner's Guide to NGS Data Analysis (2 last seats)
NGS
RNA-Seq
workshop
updated 7 weeks ago by
Ram
37k • written 7.6 years ago by
David Langenberger
9.8k
14
votes
2
replies
4.9k
views
News:
Open Targets, identifying targets for drug development in the treatment of diseases.
Tools
Bioinformatics
Drug
open targets
database
News
4.2 years ago by
Denise CS
★ 5.2k
14
votes
3
replies
3.2k
views
News:
Updated: Conference/Symposium/Seminar/Workshop alert 2018-2019
bioinformatics
symposium
seminar
conference
News
updated 4.3 years ago by
sangram_keshari
▴ 260 • written 4.7 years ago by
lakhujanivijay
5.7k
14
votes
1
reply
2.0k
views
News:
The Gene Ontology Handbook (open access)
handbook
training
news
tutorial
GO
News
6.1 years ago by
Christophe Dessimoz
▴ 740
13
votes
8
replies
2.2k
views
News:
NCBI is going to eliminate GI identifiers
GI
number
identifier
ncbi
News
6.9 years ago by
Anima Mundi
★ 2.9k
13
votes
2
replies
1.1k
views
News:
Thank you Biostars!
acknowledgement
thank you
biostars
forum
News
3.7 years ago by
Glory Basumata
▴ 140
13
votes
7
replies
5.0k
views
News:
Free HiSeq X Ten human genome fastq test data
HiSeq-X-Ten
Human-genome
Fastq
next-gen
updated 13 months ago by
Ram
37k • written 8.5 years ago by
rbagnall
★ 1.8k
1,000 results • Page
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Recent Votes
C: Reorder heatmap rows in a dataset with missing values
A: Difference between GTF file with CHR and without CHR. ENSEMBL
Answer: Base recalibration in normal vs. tumor somatic variant calling in WXS data?
A: from .BAM to .BAI using samtools
Comment: bgzip error 4
Answer: Gene Set Enrichment Analysis, pathway, metabolism
Answer: Gene Set Enrichment Analysis, pathway, metabolism
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tianshenbio
▴ 160
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maxdlf12
• 0
Teacher
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152k
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Recent Replies
Answer: Recommendations needed for a tool for comparative gene set enrichment analyses v
by
fuellen
▴ 20
Hello and Thanks! OK, I should have written "The gene lists I have prepared" instead of "The DEG lists I have prepared". In any case, is …
Comment: a problem with getBM
by
Mike Smith
★ 1.9k
Can you update your post to show some examples of what's in your `ensembl_ids` object? Perhaps the contents of `head(ensembl_ids)`. It's …
Answer: trainGlimmerHMM Error while training a genome
by
congliu37
• 0
Hello, I got the same error using ~20,000 genes for training and it was solved by reducing training gene set. I assume GlimmerHMM was no…
Comment: How to Calulate Allele Frequency from a VCF File?
by
Jeremy Leipzig
21k
That's correct. You don't have biallelic alleles in mitochondria, so you can use either the Allele depth (AD) or depth of coverage (DP) for…
Comment: How to calculate tumor mutation burden (TMB)?
by
Fabio Marroni
★ 2.9k
I just published a [post][1] on my blog, in which I include a simple R function for computing TMB. Try to see if that helps. I followed the…
Comment: Gene Set Enrichment Analysis, pathway, metabolism
by
Rob
▴ 160
Thank you FrankStarling, ATpoint, jv, these were so helpful.
Comment: translate CDS to prot formatted with nt nubers
by
Pierre Lindenbaum
152k
> with nucleotide numbers and DNA/prot aligned line by line what does it mean ? Create a Minimal, Reproducible Example to enable others t…
Comment: How to translate CDS to an amino acid sequence
by
vvasta
• 0
I tried several of the online DNA translation tools but have not found one that would output DNA/prot alignment with nucleotide number w…
Comment: How possible deadlocks are there while migrating from MYISAM to InnoDb?
by
Pierre Lindenbaum
152k
but you already knew it. https://www.biostars.org/p/9551097/#9551098
Comment: How possible deadlocks are there while migrating from MYISAM to InnoDb?
by
Pierre Lindenbaum
152k
your question is not related to bioinformatics. Ask stackoverflow.com.
Comment: Statistical test for checking cis regulation?
by
Fabio Marroni
★ 2.9k
Hi lumos. It is not very clear to me what kind of information are you using for the test and how are you measuring cis-regulation. Are you …
Comment: Error 134 while aligning using hisat2
by
Fabio Marroni
★ 2.9k
Other instances of the same error were indeed related to disk [space][1]. Can you post the output of the command: `df -h /bams/`? Another p…
Comment: **Error: unable to open file or unable to determine types for file**
by
Pierre Lindenbaum
152k
``` Please ensure that your file is TAB delimited (e.g., cat -t FILE). - Also ensure that your file has integer chromosome coordinates in t…
Comment: bgzip error 4
by
Pierre Lindenbaum
152k
I/O error. Where are you writing , which filesytem ? do you have enough space ? what is the output of gzip < chr1.vcf.gz > chr1.vcf.gz…
Comment: Error: unable to open file or unable to determine types for file bed file
by
Neel
▴ 10
**Error: unable to open file or unable to determine types for file** Hi i am trying to run this commands **bedtools intersect -a Ec_k1…
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