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1,000 results • Page
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8
votes
0
replies
2.0k
views
News:
A Call To Create Listings Of The Best Review Papers
News
10.4 years ago by
Istvan Albert
96k
8
votes
0
replies
2.3k
views
News:
De Novo Genome Assembly Using Next-Generation Sequence Data (8 - 10 February 2016)
Assembly
Workshop
DNA-Seq
updated 5 months ago by
Ram
37k • written 7.3 years ago by
David Langenberger
9.8k
8
votes
0
replies
2.6k
views
News:
Plos Computational Biology: Translational Bioinformatics
tutorial
News
updated 9.9 years ago by
Istvan Albert
96k • written 9.9 years ago by
Medhat
9.5k
8
votes
1
reply
2.5k
views
News:
An Interesting Article On Bioinformatics Education With Some Press For Biostar
biostar
News
written 9.5 years ago by
Mary
11k
8
votes
1
reply
3.1k
views
News:
LAST DAY TO REGISTER - NGS Workshop 2015: A Practical Introduction to NGS Data Analysis (Oxford, UK)
workshop
News
RNA-Seq
updated 22 months ago by
Ram
37k • written 8.3 years ago by
David Langenberger
9.8k
8
votes
1
reply
987
views
News:
Clustered `nr` database is now available for web blast @NCBI
nr
blast
updated 11 months ago by
Mensur Dlakic
★ 22k • written 12 months ago by
GenoMax
125k
8
votes
4
replies
1.5k
views
News:
supporting vg users on biostars
vg
graph
vgteam
genome
News
variation
updated 7 weeks ago by
colindaven
4.4k • written 3.4 years ago by
Erik Garrison
★ 2.3k
8
votes
0
replies
1.6k
views
News:
Upcoming Workshop: Introduction to R in Biology
R
workshop
bioinformatics
News
5.9 years ago by
David Langenberger
9.8k
8
votes
6
replies
1.1k
views
News:
Illumina to Acquire Pacific Biosciences
illumina
pacbio
News
4.3 years ago by
Istvan Albert
96k
8
votes
6
replies
16k
views
News:
Bioinformatics PhD Programs in the US
education
PhD
News
3.9 years ago by
Ahmed Youssef
▴ 70
8
votes
0
replies
1.7k
views
News:
Please help! IGB grant and survey
igb
ChIP-Seq
RNA-Seq
genome
updated 9 months ago by
Ram
37k • written 7.9 years ago by
Ann
★ 2.3k
8
votes
0
replies
1.7k
views
News:
New MOOC: Algorithms for DNA Sequencing
alignment
Assembly
genomics
mooc
updated 3 months ago by
Ram
37k • written 7.5 years ago by
langmea
▴ 80
8
votes
3
replies
1.6k
views
News:
Impact of outdated gene annotations on pathway enrichment analysis
david
go
ontology
pathway
enrichment
News
6.4 years ago by
pld
5.0k
8
votes
8
replies
2.2k
views
News:
Coronavirus Genome Analysis: a new volume in the Biostar Handbook
biostar handbook
bioinformatics
education
News
written 2.9 years ago by
Istvan Albert
96k
8
votes
10
replies
3.4k
views
News:
New versions of Minia and DSK (2.0.x)
minia
dsk
assembly
gatb
updated 9 months ago by
Ram
37k • written 8.0 years ago by
Rayan Chikhi
★ 1.5k
7
votes
0
replies
804
views
News:
New layout for NCBI BLAST FTP database site starting February 4, 2020
blast+
ftp
blast_index
News
3.0 years ago by
GenoMax
125k
7
votes
0
replies
1.7k
views
News:
CIViC Hackathon and Curation Jamboree at NGS in Molecular Pathology Meeting, NKI, Nov 30 - Dec 2
NKI
News
civic
meeting
hackathon
updated 6.3 years ago by
Malachi Griffith
19k • written 6.4 years ago by
zlskidmore
▴ 290
7
votes
0
replies
3.0k
views
News:
Ncbi E-Utilities Now Provides Output In Json Format (Einfo, Esearch, And Esummary Only, For Now)
ncbi
format
eutils
entrez
updated 5 months ago by
Ram
37k • written 9.0 years ago by
Pierre Lindenbaum
152k
7
votes
8
replies
3.6k
views
News:
Next-Gen Sequencing Tutorials On Cubelp (Cranfield Bioinformatics Electronic Learning Platform)
genome
chip-seq
snp
assembly
updated 4 months ago by
Ram
37k • written 9.5 years ago by
rob234king
▴ 610
7
votes
11
replies
1.5k
views
News:
Bringing the power of Big Data to biomedical researchers
NGS
biomedical research
News
updated 5.5 years ago by
Michael Dondrup
52k • written 5.5 years ago by
Paul Kutzner
▴ 100
7
votes
3
replies
4.1k
views
News:
Pathway Commons 2 - Search And Visualize Public Biological Pathway Information. Single Point Of Access.
api
cytoscape
News
9.2 years ago by
B. Arman Aksoy
★ 1.2k
7
votes
0
replies
2.7k
views
News:
Correction for "A benchmark for RNA-seq quantification pipelines"
rna-seq
News
6.6 years ago by
rairizarry
▴ 70
7
votes
5
replies
2.2k
views
News:
Physalia-Course: Introduction to Linux and workflows for biologists (Berlin)
Assembly
next-gen
alignment
Unix
News
5.9 years ago by
carlopecoraro2
★ 2.2k
7
votes
8
replies
1.4k
views
News:
A new Stack Exchange site for Research Computing
unix
linux
programming
News
updated 5.2 years ago by
GenoMax
125k • written 5.2 years ago by
tiagoantao
▴ 690
7
votes
1
reply
2.5k
views
News:
Integrated Genome Browser version 8.3 released - new native installer
ChIP-Seq
RNA-Seq
igv
igb
updated 10 months ago by
Ram
37k • written 8.0 years ago by
Ann
★ 2.3k
7
votes
0
replies
1.7k
views
News:
Us Ethics Panel Reports On Dna Sequencing And Privacy
next-gen
News
10.3 years ago by
Mary
11k
7
votes
4
replies
2.4k
views
News:
Boston Ma Us Area Folks: Software Carpentry Workshop For Women In Science Coming Up
python
training
News
updated 9.3 years ago by
marksimon112
• 0 • written 9.8 years ago by
Mary
11k
7
votes
0
replies
1.3k
views
News:
First PacBio Sequel data available
sequel
pacbio
News
6.4 years ago by
GenoMax
125k
7
votes
3
replies
1.4k
views
News:
New NCBI Datasets home and documentation pages provide easier access
ncbi
gene
SARS-CoV-2
genome
updated 21 months ago by
Istvan Albert
96k • written 21 months ago by
e.cox
▴ 50
7
votes
1
reply
434
views
News:
NGSymposium - Conference in Computational Biology, 23-24.09
ML
statistics
conference
ngschool
8 months ago by
kzkedzierska
▴ 290
7
votes
2
replies
2.1k
views
News:
Annotation of Zebrafish pri-miRNAs promoters and CAGE-seq detected active Drosha processing events.
Drosha-processing
moRNAs
pri-miRNAs
zebrafish
updated 6 months ago by
Ram
37k • written 7.1 years ago by
Chirag Nepal
★ 2.3k
7
votes
3
replies
3.5k
views
News:
Visualizing genomic data: techniques and challenges. Our interview with Dr. Malachi Griffith, Dr. Obi Griffith and Mr. Zachary Skidmore (The Griffith…
RNA-Seq
R
NGSdata
genome
News
4.1 years ago by
carlopecoraro2
★ 2.2k
7
votes
2
replies
2.0k
views
News:
Upcoming Hands-On Workshop: microRNA Analysis Using Next-Generation Sequencing
microRNA
NGS
workshop
News
updated 6.6 years ago by
Adele Feuerstein
▴ 460 • written 6.6 years ago by
David Langenberger
9.8k
7
votes
1
reply
2.9k
views
News:
A Multi-Split Mapping Algorithm For Circular Rna, Splicing, Trans-Splicing, And Fusion Detection
ngs
mapping
News
9.0 years ago by
David Langenberger
9.8k
6
votes
0
replies
2.0k
views
News:
Bioinformatics internships with Google Summer of Code 2019
GSOC
intern
Ensembl
News
3.9 years ago by
Emily
23k
6
votes
4
replies
898
views
News:
Course online - Comparative Genomics
assembly
next-gen
genome
alignment
News
2.8 years ago by
carlopecoraro2
★ 2.2k
6
votes
0
replies
2.0k
views
News:
Biostars on Google Summer of Code 2015
meta
biostars
updated 8 months ago by
Ram
37k • written 7.9 years ago by
Istvan Albert
96k
6
votes
1
reply
1.7k
views
News:
Are protein domains indivisible?
Domains
Proteins
Athropy
News
updated 7.6 years ago by
brennanpincardiff
▴ 200 • written 7.7 years ago by
Deepak Tanwar
★ 4.2k
6
votes
2
replies
850
views
News:
Temporarily reduced functionality of Ensembl and Ensembl Genomes
Ensembl
News
4.0 years ago by
Ben_Ensembl
★ 2.2k
6
votes
7
replies
1.4k
views
News:
NCBI wants to remove quality scores from SRA
SRA
quality scores
genome
Assembly
trimming
News
updated 2.6 years ago by
GenoMax
125k • written 2.6 years ago by
zhousun21
▴ 40
6
votes
0
replies
2.4k
views
News:
New Methods Section In Plos Computational Biology
News
9.9 years ago by
Casey Bergman
18k
6
votes
4
replies
1.3k
views
News:
Genomic variation course at the EBI - Updated
variation
1000 Genomes
Ensembl
snps
News
6.7 years ago by
Emily
23k
6
votes
1
reply
2.6k
views
News:
GMOD Online Training 2014 coming up
chado
gmod
annotation
News
galaxy
updated 8.8 years ago by
Buttonwood
▴ 40 • written 8.8 years ago by
Mary
11k
6
votes
9
replies
3.6k
views
News:
1000 Genomes : The Initial Phase 3 variant list and phased genotypes.
News
1000genomes
updated 15 months ago by
Ram
37k • written 8.6 years ago by
Pierre Lindenbaum
152k
6
votes
0
replies
5.0k
views
News:
Game Changer? Illumina Nextseq 500
illumina
News
9.1 years ago by
IV
★ 1.3k
6
votes
0
replies
2.4k
views
News:
http://crackingthebiocode.github.io : Profiles of Computational Biologists & Bioinformaticians
career
job
updated 12 months ago by
Ram
37k • written 8.3 years ago by
Pierre Lindenbaum
152k
6
votes
4
replies
767
views
News:
Upcoming online training courses
Python
R
18 months ago by
carlopecoraro2
★ 2.2k
6
votes
7
replies
2.5k
views
News:
New in DiffBind: dba.plotProfile() - Peak profiles and profile heatmaps
DiffBind
ChIP-seq
deepTools
visualization
ATAC-seq
4 months ago by
Rory Stark
★ 1.6k
6
votes
0
replies
334
views
News:
NGSchool2022: Machine Learning in Computational Biology
summer
machine
learning
school
ngschool
ML
statistics
9 months ago by
kzkedzierska
▴ 290
6
votes
0
replies
760
views
News:
CWL user support moving to https://cwl.discourse.group/; many thanks to Biostars for over 4 years of support!
cwl
News
thanks
updated 2.9 years ago by
ATpoint
68k • written 3.3 years ago by
Michael R. Crusoe
★ 1.9k
1,000 results • Page
3 of 20
Recent Votes
Filtering out samples by FORMAT attributes using bcftools
Deseq2 with one factor and multiple levels
Answer: Error while trying to install salmon
Answer: Forcing Installation Of DMRcate
Gene Expression Omnibus Data Mining (IA): Quick and easy download of GEO data
SNP calling
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Comment: ceres score in crispr screen
by
edus_bioinfo
▴ 20
they didnt provide a good tutorial thats why i cannot determine whether i have problem in input files ps: but i cannot run the demo files
Comment: ceres score in crispr screen
by
edus_bioinfo
▴ 20
:) technical support. > my run is giving Error: Encountered internal Bowtie 2 exception (#1) Command: /Users/sudeeris/Downloads/bowtie2-…
Comment: Network analysis for two Factors
by
seidel
10k
Have you looked at any tutorials? Three are many out there. ([1][1], [2][2], [3][3], [etc.][4]) Do you have a preferred language? [1]: …
Comment: ceres score in crispr screen
by
seidel
10k
Are you looking for moral support or technical support? Have you tried using it with an older version of R and bioconductor? (i.e. circa 20…
Comment: PLINK2 selecting variants based on INFO score
by
chrchang523
9.9k
If you aren't willing to provide more precise information than this, sufficient for a reader to reproduce what you're seeing, I will delete…
Answer: Error while trying to install salmon
by
Chris
▴ 10
Donwloading the package from conda (https://anaconda.org/conda-forge/boost/files?version=1.60.0) worked for me wget https://anaconda.org/…
Answer: finding error to run edgeR, error in ploting MDS and after that in model matrix
by
Gordon Smyth
★ 5.4k
First issue is that GEO series matrix files can't be read using `read.delim`. Second issue is the data are from Agilent microarrays and …
Comment: PLINK2 selecting variants based on INFO score
by
m.c.roozen
• 0
I have tried that (the .pvar file contains the "1:10586" form as ID which I mentioned above) which leads to the same output as above, 0 var…
Answer: samtools markdup in Rsamtools
by
joe
▴ 350
You can run any system command from inside R using `system()`. This works well if there is a single command without many dependencies. For …
Comment: samtools markdup in Rsamtools
by
Pierre Lindenbaum
152k
> But other solutions are also fine: bash, nextflow, snakemake
Answer: samtools markdup in Rsamtools
by
ATpoint
68k
My honest opinion: Do processing of sequencing data on the standard command line with samtools. There is no need for the added complexity t…
Comment: To batch correct or analyse separately?
by
predeus
★ 1.8k
Another great and up-to-date resource is this: https://www.sc-best-practices.org/preamble.html
Comment: PLINK2 selecting variants based on INFO score
by
chrchang523
9.9k
The --exclude file must use the same variant IDs as your .pvar file. You should elaborate on what seemed to go wrong when you tried to arr…
Comment: phylogeny
by
炫
• 0
Hello, my problem is the same as yours, did you finally solve this problem?
Comment: phylogeny
by
炫
• 0
您好,我的问题和您的一模一样,请问您这个问题最终解决了吗
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