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1,000 results • Page
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8
votes
0
replies
2.8k
views
News:
Plos Computational Biology: Translational Bioinformatics
publications
plos
updated 13 months ago by
Ram
43k • written 11.1 years ago by
Medhat
9.7k
8
votes
0
replies
1.2k
views
News:
Final Call - Hands-On RNA-Seq Data Analysis Workshop - only 2 seats left
data-analysis
RNA-Seq
workshop
updated 10 months ago by
Ram
43k • written 4.7 years ago by
David Langenberger
11k
8
votes
0
replies
2.2k
views
News:
A Call To Create Listings Of The Best Review Papers
papers
updated 13 months ago by
Ram
43k • written 11.6 years ago by
Istvan Albert
100k
8
votes
10
replies
4.0k
views
News:
New versions of Minia and DSK (2.0.x)
minia
dsk
assembly
gatb
updated 23 months ago by
Ram
43k • written 9.1 years ago by
Rayan Chikhi
★ 1.5k
8
votes
2
replies
890
views
News:
Save time and money through improved onboarding of your NGS data scientists
NGS
data-analysis
updated 12 months ago by
Ram
43k • written 4.2 years ago by
David Langenberger
11k
8
votes
3
replies
1.8k
views
News:
Impact of outdated gene annotations on pathway enrichment analysis
pathway-enrichment
gene-ontology
david
go
updated 11 months ago by
Ram
43k • written 7.5 years ago by
pld
5.1k
8
votes
0
replies
2.5k
views
News:
De Novo Genome Assembly Using Next-Generation Sequence Data (8 - 10 February 2016)
Assembly
Workshop
DNA-Seq
updated 18 months ago by
Ram
43k • written 8.5 years ago by
David Langenberger
11k
8
votes
8
replies
2.8k
views
News:
Coronavirus Genome Analysis: a new volume in the Biostar Handbook
biostar-handbook
education
updated 9 months ago by
Ram
43k • written 4.1 years ago by
Istvan Albert
100k
8
votes
0
replies
1.8k
views
News:
Please help! IGB grant and survey
igb
ChIP-Seq
RNA-Seq
genome
updated 23 months ago by
Ram
43k • written 9.1 years ago by
Ann
★ 2.4k
8
votes
2
replies
560
views
News:
LAST CALL - Single-Cell RNA-Seq Data Analysis: A Practical Introduction (May 6-8, 2024 in Berlin)
single-cell
sequencing
22 days ago by
David Langenberger
11k
8
votes
0
replies
1.9k
views
News:
New MOOC: Algorithms for DNA Sequencing
alignment
Assembly
genomics
mooc
updated 17 months ago by
Ram
43k • written 8.7 years ago by
langmea
▴ 80
8
votes
6
replies
4.0k
views
News:
Last Call: Upcoming Workshop - Rna-Seq Bioinformatics: A Practical Introduction
RNA-seq
updated 13 months ago by
Ram
43k • written 11.2 years ago by
David Langenberger
11k
8
votes
1
reply
2.6k
views
News:
An Interesting Article On Bioinformatics Education With Some Press For Biostar
meta
biostars
updated 13 months ago by
Ram
43k • written 10.7 years ago by
Mary
11k
8
votes
1
reply
1.7k
views
News:
Clustered `nr` database is now available for web blast @NCBI
nr
blast
updated 2.1 years ago by
Mensur Dlakic
★ 26k • written 2.2 years ago by
GenoMax
140k
8
votes
0
replies
1.8k
views
News:
Upcoming Workshop: Introduction to R in Biology
workshop
R
updated 11 months ago by
Ram
43k • written 7.1 years ago by
David Langenberger
11k
8
votes
1
reply
242
views
News:
Registration OPEN: 8th Berlin Summer School in NGS Data Analysis (June 10-14, 2024)
Workshop
DNA-Seq
RNA-Seq
Illumina
updated 17 days ago by
JohnBlue81
▴ 500 • written 21 days ago by
David Langenberger
11k
8
votes
1
reply
3.3k
views
News:
LAST DAY TO REGISTER - NGS Workshop 2015: A Practical Introduction to NGS Data Analysis (Oxford, UK)
RNA-Seq
workshop
updated 12 months ago by
Ram
43k • written 9.4 years ago by
David Langenberger
11k
8
votes
4
replies
1.9k
views
News:
supporting vg users on biostars
variation-graph
genome
vg
vgteam
updated 10 months ago by
Ram
43k • written 4.5 years ago by
Erik Garrison
★ 2.4k
8
votes
6
replies
1.4k
views
News:
Illumina to Acquire Pacific Biosciences
pacbio
illumina
updated 10 months ago by
Ram
43k • written 5.4 years ago by
Istvan Albert
100k
7
votes
2
replies
1.0k
views
News:
NGS Data Analysis Workshops 2024
scRNA-seq
dna-seq
rna-seq
nextflow
10 weeks ago by
David Langenberger
11k
7
votes
0
replies
2.9k
views
News:
Correction for "A benchmark for RNA-seq quantification pipelines"
RNA-seq
updated 11 months ago by
Ram
43k • written 7.8 years ago by
rairizarry
▴ 70
7
votes
5
replies
2.5k
views
News:
Physalia-Course: Introduction to Linux and workflows for biologists (Berlin)
next-gen
Unix
Assembly
alignment
updated 10 months ago by
Ram
43k • written 7.0 years ago by
carlopecoraro2
★ 2.4k
7
votes
11
replies
2.0k
views
News:
Bringing the power of Big Data to biomedical researchers
NGS
biomedical-research
updated 10 months ago by
Ram
43k • written 6.6 years ago by
Paul Kutzner
▴ 100
7
votes
0
replies
1.0k
views
News:
New layout for NCBI BLAST FTP database site starting February 4, 2020
ftp
blast
blast_index
blast-plus
updated 9 months ago by
Ram
43k • written 4.2 years ago by
GenoMax
140k
7
votes
1
reply
658
views
News:
NGSymposium - Conference in Computational Biology, 23-24.09
ML
statistics
conference
ngschool
22 months ago by
kzkedzierska
▴ 290
7
votes
3
replies
4.5k
views
News:
Pathway Commons 2 - Search And Visualize Public Biological Pathway Information. Single Point Of Access.
api
cytoscape
updated 13 months ago by
Ram
43k • written 10.3 years ago by
B. Arman Aksoy
★ 1.2k
7
votes
3
replies
1.8k
views
News:
New NCBI Datasets home and documentation pages provide easier access
ncbi
gene
SARS-CoV-2
genome
updated 2.9 years ago by
Istvan Albert
100k • written 2.9 years ago by
e.cox
▴ 50
7
votes
8
replies
1.8k
views
News:
A new Stack Exchange site for Research Computing
unix
linux
updated 10 months ago by
Ram
43k • written 6.3 years ago by
tiagoantao
▴ 690
7
votes
0
replies
1.5k
views
News:
First PacBio Sequel data available
pacbio
sequel
updated 11 months ago by
Ram
43k • written 7.5 years ago by
GenoMax
140k
7
votes
8
replies
4.1k
views
News:
Next-Gen Sequencing Tutorials On Cubelp (Cranfield Bioinformatics Electronic Learning Platform)
genome
chip-seq
snp
assembly
updated 18 months ago by
Ram
43k • written 10.6 years ago by
rob234king
▴ 610
7
votes
4
replies
2.7k
views
News:
Boston Ma Us Area Folks: Software Carpentry Workshop For Women In Science Coming Up
python
training
updated 13 months ago by
Ram
43k • written 11.0 years ago by
Mary
11k
7
votes
1
reply
2.7k
views
News:
Integrated Genome Browser version 8.3 released - new native installer
ChIP-Seq
RNA-Seq
igv
igb
updated 24 months ago by
Ram
43k • written 9.2 years ago by
Ann
★ 2.4k
7
votes
2
replies
2.2k
views
News:
Upcoming Hands-On Workshop: microRNA Analysis Using Next-Generation Sequencing
NGS
microRNA
workshop
updated 11 months ago by
Ram
43k • written 7.8 years ago by
David Langenberger
11k
7
votes
0
replies
1.9k
views
News:
CIViC Hackathon and Curation Jamboree at NGS in Molecular Pathology Meeting, NKI, Nov 30 - Dec 2
meeting
civic
hackathon
NKI
updated 11 months ago by
Ram
43k • written 7.6 years ago by
zlskidmore
▴ 290
7
votes
1
reply
3.1k
views
News:
A Multi-Split Mapping Algorithm For Circular Rna, Splicing, Trans-Splicing, And Fusion Detection
ngs
mapping
updated 13 months ago by
Ram
43k • written 10.1 years ago by
David Langenberger
11k
7
votes
2
replies
2.3k
views
News:
Annotation of Zebrafish pri-miRNAs promoters and CAGE-seq detected active Drosha processing events.
Drosha-processing
moRNAs
pri-miRNAs
zebrafish
updated 20 months ago by
Ram
43k • written 8.3 years ago by
Chirag Nepal
★ 2.4k
7
votes
0
replies
1.8k
views
News:
Us Ethics Panel Reports On Dna Sequencing And Privacy
next-gen
updated 13 months ago by
Ram
43k • written 11.5 years ago by
Mary
11k
7
votes
3
replies
3.8k
views
News:
Visualizing genomic data: techniques and challenges. Our interview with Dr. Malachi Griffith, Dr. Obi Griffith and Mr. Zachary Skidmore (The Griffith…
R
RNA-Seq
genome
NGSdata
updated 10 months ago by
Ram
43k • written 6.8 years ago by
carlopecoraro2
★ 2.4k
7
votes
0
replies
3.2k
views
News:
Ncbi E-Utilities Now Provides Output In Json Format (Einfo, Esearch, And Esummary Only, For Now)
ncbi
format
eutils
entrez
updated 19 months ago by
Ram
43k • written 10.1 years ago by
Pierre Lindenbaum
160k
6
votes
4
replies
1.3k
views
News:
Course online - Comparative Genomics
assembly
genome
next-gen
alignment
updated 9 months ago by
Ram
43k • written 3.9 years ago by
carlopecoraro2
★ 2.4k
6
votes
2
replies
1.8k
views
News:
Belly Button Biodiversity Project Requests Your Analysis
biodiversity
project
updated 13 months ago by
Ram
43k • written 11.4 years ago by
Mary
11k
6
votes
1
reply
2.5k
views
News:
FastQC Version 0.11.1 released
genome
next-gen-sequencing
updated 12 months ago by
Ram
43k • written 9.8 years ago by
rtliu
★ 2.2k
6
votes
0
replies
1.9k
views
News:
Bioinformatics Contest 2017
contest
updated 11 months ago by
Ram
43k • written 7.2 years ago by
pavlov.ivan095
▴ 70
6
votes
2
replies
2.2k
views
News:
Galaxy-specific Biostar Instance
galaxy
biostars
updated 13 months ago by
Ram
43k • written 9.9 years ago by
martenson
▴ 380
6
votes
0
replies
950
views
News:
CWL user support moving to https://cwl.discourse.group/; many thanks to Biostars for over 4 years of support!
cwl
thanks
updated 9 months ago by
Ram
43k • written 4.4 years ago by
Michael R. Crusoe
★ 1.9k
6
votes
3
replies
2.4k
views
News:
Become a Professional Biinformatician in NGS, Microarray in very fair price. Register for ArrayGen training program as soon as possible to get good a…
ChIP-Seq
next-gen
RNA-Seq
updated 11 months ago by
Ram
43k • written 7.2 years ago by
Seema
• 0
6
votes
7
replies
2.2k
views
News:
NCBI wants to remove quality scores from SRA
quality-scores
trimming
Assembly
genome
SRA
updated 9 months ago by
Ram
43k • written 3.7 years ago by
zhousun21
▴ 40
6
votes
1
reply
2.9k
views
News:
The Art of Bioinformatics Scripting. A new book in the Biostar Handbook collection.
education
updated 3.5 years ago by
ghazala.bif.2k18
• 0 • written 4.4 years ago by
Istvan Albert
100k
6
votes
9
replies
4.2k
views
News:
1000 Genomes : The Initial Phase 3 variant list and phased genotypes.
1000genomes
updated 12 months ago by
Ram
43k • written 9.8 years ago by
Pierre Lindenbaum
160k
6
votes
1
reply
1.0k
views
News:
uniprot.org is moving from HTTP to HTTPS
protein
database
uniprot
updated 10 months ago by
Ram
43k • written 6.3 years ago by
Elisabeth Gasteiger
★ 2.3k
1,000 results • Page
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Recent Votes
Comment: Error in openning FastQC
Comment: F*up Night style events for Bioinformatics ? Comment if you're interested!
Answer: F*up Night style events for Bioinformatics ? Comment if you're interested!
Answer: F*up Night style events for Bioinformatics ? Comment if you're interested!
Comment: F*up Night style events for Bioinformatics ? Comment if you're interested!
Comment: F*up Night style events for Bioinformatics ? Comment if you're interested!
Answer: F*up Night style events for Bioinformatics ? Comment if you're interested!
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Recent Replies
Comment: Low number of both surviving reads after trimming
by
Jay
• 0
Thank you for your opinion. I will try with lower LEADING and TRAILING bases. By the way, I tried to set `keepBothReads:true` through sear…
Comment: Error in openning FastQC
by
GenoMax
140k
At this point it would be beneficial to learn some of the basics of command line. Please use this UNIX tutorial since you seem to be new to…
Comment: vcf file: number of samples does not match number of columns
by
Pierre Lindenbaum
160k
> ore or have any suggestions for fixing it? it's a problem with your upstream process. You'd better fix it.
Comment: Error in openning FastQC
by
friszd
• 0
after running fastqc -o output.html input.fastq, terminal returns: " Specified output directory 'output.html' does not exist " , when i run…
Comment: Is it reasonable to discard reads that show variation of quality across its leng
by
GenoMax
140k
The question you should be looking into is why the Q scores are dropping there? Are there `N` calls indicating some issue with that cycle?
Comment: Error in openning FastQC
by
GenoMax
140k
What is `ctrl+c ctrl+v`? You may actually be killing the running fastqc process. If you run `fastqc` interactively (like what was shown ab…
Comment: F*up Night style events for Bioinformatics ? Comment if you're interested!
by
Dave Carlson
★ 1.7k
Ugh. I've definitely done this one before as well. And was none too happy about it.
Comment: Error in openning FastQC
by
friszd
• 0
fastqc -o output.html input.fastq ctrl+c ctrl+v
Comment: Error running local blastn in R using system2
by
GenoMax
140k
What do you see if you `cat nt_euk.nal`? Do the number of pieces mentioned in that file match with what you locally have?
Comment: Low number of both surviving reads after trimming
by
GenoMax
140k
It is your data and if you want to do that it is up to you. You may be throwing away essentially good data (you should remove the nextera s…
Comment: F*up Night style events for Bioinformatics ? Comment if you're interested!
by
Istvan Albert
100k
Some things never change ... the most common mistake is still the one on top there
Comment: Low number of both surviving reads after trimming
by
Ram
43k
I see that the code content was not added again, just the formatting modified. The output is still mangled. Compare it to the output you se…
Answer: F*up Night style events for Bioinformatics ? Comment if you're interested!
by
Mensur Dlakic
★ 26k
I was trying to avoid re-living traumatic events, but here goes. This is an attempt to delete all the files with a certain extension but in…
Comment: Low number of both surviving reads after trimming
by
Jay
• 0
Thank you for your response. There was no particular reason of `LEADING:20 and TRAILING:20`, but I used the same parameters as I had used …
Comment: Low number of both surviving reads after trimming
by
GenoMax
140k
A significant fraction of your reads appear to have the nextera sequence, that combined to this directive `LEADING:20` (do you have a reaso…
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