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News: Illumina to Acquire Pacific Biosciences
pacbio illumina
updated 9 days ago by 39k • written 4.6 years ago by 98k
8
votes
1
reply
3.2k
views
News: LAST DAY TO REGISTER - NGS Workshop 2015: A Practical Introduction to NGS Data Analysis (Oxford, UK)
RNA-Seq workshop
updated 12 weeks ago by 39k • written 8.6 years ago by 9.9k
8
votes
0
replies
1.7k
views
News: Upcoming Workshop: Introduction to R in Biology
workshop R
updated 7 weeks ago by 39k • written 6.3 years ago by 9.9k
8
votes
6
replies
16k
views
News: Bioinformatics PhD Programs in the US
education PhD
updated 17 days ago by 39k • written 5.5 years ago by ▴ 70
8
votes
0
replies
2.0k
views
News: A Call To Create Listings Of The Best Review Papers
papers
updated 3 months ago by 39k • written 10.8 years ago by 98k
8
votes
2
replies
688
views
News: Save time and money through improved onboarding of your NGS data scientists
NGS data-analysis
updated 11 weeks ago by 39k • written 3.4 years ago by 9.9k
8
votes
1
reply
1.2k
views
News: Clustered `nr` database is now available for web blast @NCBI
nr blast
updated 15 months ago by ★ 23k • written 16 months ago by 129k
8
votes
3
replies
1.6k
views
News: fastp 0.22 released, with new FASTQ deduplication feature.
fastp
updated 21 months ago by 129k • written 21 months ago by ★ 2.4k
8
votes
3
replies
1.6k
views
News: Impact of outdated gene annotations on pathway enrichment analysis
pathway-enrichment gene-ontology david go
updated 8 weeks ago by 39k • written 6.7 years ago by 5.1k
8
votes
0
replies
1.1k
views
News: Final Call - Hands-On RNA-Seq Data Analysis Workshop - only 2 seats left
data-analysis RNA-Seq workshop
updated 2 days ago by 39k • written 3.9 years ago by 9.9k
8
votes
1
reply
2.5k
views
News: An Interesting Article On Bioinformatics Education With Some Press For Biostar
meta biostars
updated 3 months ago by 39k • written 9.8 years ago by 11k
8
votes
0
replies
2.6k
views
News: Plos Computational Biology: Translational Bioinformatics
publications plos
updated 3 months ago by 39k • written 10.2 years ago by 9.6k
8
votes
4
replies
1.6k
views
News: supporting vg users on biostars
variation-graph genome vg vgteam
updated 1 day ago by 39k • written 3.7 years ago by ★ 2.4k
8
votes
0
replies
1.8k
views
News: New MOOC: Algorithms for DNA Sequencing
alignment Assembly genomics mooc
updated 7 months ago by 39k • written 7.8 years ago by ▴ 80
8
votes
10
replies
3.5k
views
News: New versions of Minia and DSK (2.0.x)
minia dsk assembly gatb
updated 13 months ago by 39k • written 8.3 years ago by ★ 1.5k
7
votes
2
replies
2.1k
views
News: Annotation of Zebrafish pri-miRNAs promoters and CAGE-seq detected active Drosha processing events.
Drosha-processing moRNAs pri-miRNAs zebrafish
updated 10 months ago by 39k • written 7.5 years ago by ★ 2.3k
7
votes
0
replies
2.7k
views
News: Correction for "A benchmark for RNA-seq quantification pipelines"
RNA-seq
updated 8 weeks ago by 39k • written 7.0 years ago by ▴ 70
7
votes
0
replies
1.8k
views
News: CIViC Hackathon and Curation Jamboree at NGS in Molecular Pathology Meeting, NKI, Nov 30 - Dec 2
meeting civic hackathon NKI
updated 8 weeks ago by 39k • written 6.8 years ago by ▴ 290
7
votes
1
reply
2.5k
views
News: Integrated Genome Browser version 8.3 released - new native installer
ChIP-Seq RNA-Seq igv igb
updated 14 months ago by 39k • written 8.4 years ago by ★ 2.3k
7
votes
0
replies
1.3k
views
News: First PacBio Sequel data available
pacbio sequel
updated 8 weeks ago by 39k • written 6.7 years ago by 129k
7
votes
5
replies
2.3k
views
News: Physalia-Course: Introduction to Linux and workflows for biologists (Berlin)
next-gen Unix Assembly alignment
updated 23 days ago by 39k • written 6.2 years ago by ★ 2.3k
7
votes
4
replies
2.4k
views
News: Boston Ma Us Area Folks: Software Carpentry Workshop For Women In Science Coming Up
python training
updated 3 months ago by 39k • written 10.2 years ago by 11k
7
votes
11
replies
1.6k
views
News: Bringing the power of Big Data to biomedical researchers
NGS biomedical-research
updated 19 days ago by 39k • written 5.8 years ago by ▴ 100
7
votes
1
reply
483
views
News: NGSymposium - Conference in Computational Biology, 23-24.09
ML statistics conference ngschool
12 months ago by kzkedzierska ▴ 290
7
votes
1
reply
2.9k
views
News: A Multi-Split Mapping Algorithm For Circular Rna, Splicing, Trans-Splicing, And Fusion Detection
ngs mapping
updated 3 months ago by 39k • written 9.3 years ago by 9.9k
7
votes
0
replies
3.0k
views
News: Ncbi E-Utilities Now Provides Output In Json Format (Einfo, Esearch, And Esummary Only, For Now)
ncbi format eutils entrez
updated 9 months ago by 39k • written 9.3 years ago by 154k
7
votes
8
replies
3.8k
views
News: Next-Gen Sequencing Tutorials On Cubelp (Cranfield Bioinformatics Electronic Learning Platform)
genome chip-seq snp assembly
updated 8 months ago by 39k • written 9.8 years ago by ▴ 610
7
votes
0
replies
1.7k
views
News: Us Ethics Panel Reports On Dna Sequencing And Privacy
next-gen
updated 3 months ago by 39k • written 10.6 years ago by 11k
7
votes
8
replies
1.5k
views
News: A new Stack Exchange site for Research Computing
unix linux
updated 17 days ago by 39k • written 5.5 years ago by ▴ 690
7
votes
0
replies
847
views
News: New layout for NCBI BLAST FTP database site starting February 4, 2020
blast+ ftp blast_index News
3.3 years ago by GenoMax 129k
7
votes
3
replies
4.2k
views
News: Pathway Commons 2 - Search And Visualize Public Biological Pathway Information. Single Point Of Access.
api cytoscape
updated 3 months ago by 39k • written 9.5 years ago by ★ 1.2k
7
votes
3
replies
3.6k
views
News: Visualizing genomic data: techniques and challenges. Our interview with Dr. Malachi Griffith, Dr. Obi Griffith and Mr. Zachary Skidmore (The Griffith…
R RNA-Seq genome NGSdata
updated 22 days ago by 39k • written 5.9 years ago by ★ 2.3k
7
votes
3
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1.6k
views
News: New NCBI Datasets home and documentation pages provide easier access
ncbi gene SARS-CoV-2 genome
updated 2.1 years ago by 98k • written 2.1 years ago by ▴ 50
7
votes
2
replies
2.1k
views
News: Upcoming Hands-On Workshop: microRNA Analysis Using Next-Generation Sequencing
NGS microRNA workshop
updated 8 weeks ago by 39k • written 7.0 years ago by 9.9k
6
votes
1
reply
1.8k
views
News: Contest: Antibody Marathon Match Problem: ABCSpeedup
contest
updated 11 weeks ago by 39k • written 8.4 years ago by 154k
6
votes
1
reply
2.4k
views
News: FastQC Version 0.11.1 released
genome next-gen-sequencing
updated 12 weeks ago by 39k • written 9.0 years ago by ★ 2.2k
6
votes
0
replies
2.1k
views
News: Bioinformatics internships with Google Summer of Code 2019
intern Ensembl GSOC
updated 8 days ago by 39k • written 4.3 years ago by 23k
6
votes
1
reply
1.8k
views
News: Massively Differential Bias Between Two Widely Used Illumina Library Preparation Methods For Small Rna Sequencing
illumina RNA-seq
updated 3 months ago by 39k • written 9.4 years ago by 9.9k
6
votes
0
replies
2.4k
views
News: http://crackingthebiocode.github.io : Profiles of Computational Biologists & Bioinformaticians
career
updated 12 weeks ago by 39k • written 8.7 years ago by 154k
6
votes
1
reply
2.7k
views
News: GMOD Online Training 2014 coming up
galaxy chado gmod annotation
updated 12 weeks ago by 39k • written 9.1 years ago by 11k
6
votes
0
replies
2.5k
views
News: Broad Releases Fastg Multiple Seq Assembly Format
FASTG reference-format
updated 3 months ago by 39k • written 10.5 years ago by ★ 5.2k
6
votes
13
replies
1.5k
views
News: Ensembl reduced functionality: 10th March-16th April 2020
Ensembl VEP BLAT service News
9 months ago by Ben_Ensembl ★ 2.2k
6
votes
9
replies
3.7k
views
News: 1000 Genomes : The Initial Phase 3 variant list and phased genotypes.
1000genomes
updated 12 weeks ago by 39k • written 8.9 years ago by 154k
6
votes
0
replies
1.8k
views
News: Bioinformatics Contest 2017
contest
updated 7 weeks ago by 39k • written 6.4 years ago by ▴ 70
6
votes
0
replies
2.5k
views
News: New Methods Section In Plos Computational Biology
publications plos
updated 3 months ago by 39k • written 10.2 years ago by 18k
6
votes
0
replies
1.3k
views
News: Now Live: precisionFDA Hidden Treasures - Warm Up Challenge
next-gen-sequencing
updated 19 days ago by 39k • written 5.9 years ago by ▴ 90
6
votes
1
reply
900
views
News: uniprot.org is moving from HTTP to HTTPS
protein database uniprot
updated 16 days ago by 39k • written 5.5 years ago by ★ 2.2k
6
votes
3
replies
2.2k
views
News: Become a Professional Biinformatician in NGS, Microarray in very fair price. Register for ArrayGen training program as soon as possible to get good a…
ChIP-Seq next-gen RNA-Seq
updated 7 weeks ago by 39k • written 6.3 years ago by • 0
6
votes
7
replies
3.1k
views
News: New in DiffBind: dba.plotProfile() - Peak profiles and profile heatmaps
DiffBind ChIP-seq deepTools visualization ATAC-seq
8 months ago by Rory Stark ★ 1.7k
6
votes
2
replies
2.3k
views
News: Interested in de novo transcriptome assembly using Trinity? Check out our interview to Brian Haas
alignment RNA-Seq
updated 7 weeks ago by 39k • written 6.2 years ago by ★ 2.3k
1,000 results • Page 3 of 20
Recent Votes
Answer: [Meta] Use of AI
Discard Alignment With Mismatches From A Bam File
Comment: Help with running ATAC using Encode pipeline
Answer: I have one fasta file of a bacteria. Can i use to create a phylogenetic tree?
Comment: RNASeq gene labeling and mRNA filter from bulkRNA data.
[Meta] Use of AI
Answer: Network cross-validation
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Supporter to rfran010 ▴ 110
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Recent Replies
Comment: What are recommended parameters for the local protein alignment ? by Vincent Laufer ★ 2.9k
did you see my updated post? once we get past that, id be willing to tackle this.
Comment: [Meta] Use of AI by Vincent Laufer ★ 2.9k
@genomax the funny thing is, I couldn't agree more with literally everything in your post. I sat there nodding my head for the duration of …
Comment: Is a human genome file with reference as NCBI37 the same as hg19? by a5864557 • 0
I know GRCh37 is synonymous (with minor differences) with hg19. However, I'm wondering if NCBI37 is synonymous with GRCh37 and hg19. Maybe …
Answer: Is a human genome file with reference as NCBI37 the same as hg19? by GenoMax 129k
If you go to the GRCh37 page at NCBI you will see that `hg19` is a synonym (mostly used by UCSC as I recall): https://www.ncbi.nlm.nih.gov/…
Comment: Help with running ATAC using Encode pipeline by Chris ▴ 100
So do we have redundant in this case when we specify the path to fastq.gz files in both input file and json file? json file is .json, how a…
Comment: Is a human genome file with reference as NCBI37 the same as hg19? by a5864557 • 0
Note: I've also asked this [here][1] [1]: https://bioinformatics.stackexchange.com/questions/21101/is-a-human-genome-file-with-referenc…
Answer: [Meta] Use of AI by GenoMax 129k
As you indicate, AI in some form or other is here to stay and we can't avoid it in our lives and on biostars. Main issue I see is the vali…
Answer: RNASeq gene labeling and mRNA filter from bulkRNA data. by rfran010 ▴ 110
featureCounts can extract this information and output a column for you during counting, presuming you input a GTF file. `extraAttributes …
Comment: What are recommended parameters for the local protein alignment ? by Alexander ▴ 70
Trying to do so ))
Comment: Help with running ATAC using Encode pipeline by rfran010 ▴ 110
The "Input files" section is details on how you can specify your fastqs in the JSON. (You specify all pipeline parameters in the JSON.) Ess…
Comment: What are recommended parameters for the local protein alignment ? by Vincent Laufer ★ 2.9k
does this mean you understand pident now and are moving forward?
Answer: Random dataset and DESeq2 by Vincent Laufer ★ 2.9k
@e38da452 Not only is this not surprising, it is the basis for an entire class of statistical techniques referred to as permutation bas…
Comment: (ERR): "index/Trinity.fa" does not exist or is not a Bowtie 2 index Exiting now by GenoMax 129k
> This generated multiple Trinity.fa files in the index folder Did the process complete successfully?
Comment: Random dataset and DESeq2 by LChart 2.6k
I don't think you've given enough detail about your approach (what's the data? are you correcting for covariates? how did you shuffle? how …
Answer: Network cross-validation by LChart 2.6k
What do you mean by "robust" in this case? Which of the following is closest to what you want to estimate: (1) Would I get a similar res…
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