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News: Penn State now offers an Online Graduate Certificate: Applied Bioinformatics
bioinformatics-education
updated 18 days ago by 38k • written 8.6 years ago by 97k
5
votes
0
replies
1.5k
views
News: New Bioconductor F1000Research Channel for publishing Bioconductor workflows
bioconductor reproducible-research
updated 2 days ago by 38k • written 7.7 years ago by 26k
5
votes
2
replies
3.2k
views
News: Summary of AGBT 2015
AGBT2015 AGBT
updated 10 days ago by 38k • written 8.1 years ago by ▴ 640
5
votes
1
reply
987
views
News: Paid opportunity: need microbiome experts for a survey and test of robustness
survey
updated 6 weeks ago by 38k • written 2.5 years ago by 21k
5
votes
1
reply
1.6k
views
News: Google Joins The Global Alliance For Genomics And Health
genomics
updated 23 days ago by 38k • written 9.1 years ago by 153k
5
votes
1
reply
1.2k
views
News: Bioinformatics Contest 2017
Contest
updated 3 months ago by 38k • written 6.2 years ago by 7.0k
5
votes
0
replies
975
views
News: Bioinformatics Contest 2021
bioinfcontest contest bioinforussia
updated 6 weeks ago by 38k • written 23 months ago by ▴ 50
5
votes
1
reply
3.3k
views
News: Broad Gatk Haplotypecaller Speed Improved 2-4 X By Cooperation With Intel, And Incremental Multi-Sample Calling Made Possible!
gatk variant-calling
updated 20 days ago by 38k • written 9.0 years ago by ★ 5.2k
5
votes
0
replies
1.7k
views
News: The future of the postdoc
sequencing Postdoc
updated 9 months ago by 38k • written 8.0 years ago by ★ 1.2k
4
votes
0
replies
2.2k
views
News: Google Genomics and Broad Institute Team Up to Tackle Genomic Data
google broad gatk
updated 3 months ago by 38k • written 7.8 years ago by ★ 5.2k
4
votes
0
replies
2.1k
views
News: Rna-Seq Workshop In Oslo - Seats Available
RNA-seq
updated 24 days ago by 38k • written 9.1 years ago by ▴ 60
4
votes
0
replies
2.2k
views
News: Upcoming Workshop: Ensembl Perl APIs
ensembl APIs Perl workshops
updated 17 days ago by 38k • written 8.4 years ago by ★ 5.2k
4
votes
3
replies
1.7k
views
News: Proteomics and Genomics Submit your Research Journals
Research Genomics Journals Proteomics
updated 3 months ago by 38k • written 7.7 years ago by • 0
4
votes
1
reply
395
views
News: Online Course - A Practical Introduction to NGS Data Analysis (September 26-28, 2022)
workshop ngs data-analysis
updated 8 months ago by 38k • written 8 months ago by 9.9k
4
votes
0
replies
1.6k
views
News: Iscb Wikipedia Competition 2013
wikipedia
updated 27 days ago by 38k • written 9.6 years ago by ★ 2.0k
4
votes
0
replies
1.4k
views
News: Helen Berman Wins The 2013 Delano Award For Computational Biosciences
delano-award
updated 4 weeks ago by 38k • written 10.0 years ago by 18k
4
votes
4
replies
2.6k
views
News: Join The Dnanexus Developer Program
api cloud
updated 27 days ago by 38k • written 9.8 years ago by ▴ 30
4
votes
1
reply
2.1k
views
News: ENCODE Users' Meeting
encode ucsc conference functional-genomics ensembl
updated 7 months ago by 38k • written 7.8 years ago by 23k
4
votes
1
reply
2.1k
views
News: 2014 ISCB Wikipedia Article Competition announcement
ISCB competition Wikipedia
written 8.6 years ago by ★ 2.0k
4
votes
3
replies
2.0k
views
News: India Recently Started Personal Genome Profiling, Commercially.
genome-profiling
updated 4 weeks ago by 38k • written 9.9 years ago by ▴ 960
4
votes
0
replies
2.7k
views
News: Wed 9/25 On-Line, Live Tutorial For Integrated Genome Browser
visualization ChIP-seq RNA-seq igv genome-browser
updated 26 days ago by 38k • written 9.5 years ago by ★ 2.3k
4
votes
0
replies
752
views
News: The BioCompute Object App-a-thon starts on May 14!
standards computation pipeline
updated 5 days ago by 38k • written 3.9 years ago by ▴ 150
4
votes
1
reply
1.9k
views
News: Mark2Cure launches tool to help crowd-source curation of the biomedical literature
crowd-sourcing
updated 3 months ago by 38k • written 8.2 years ago by 20k
4
votes
0
replies
2.2k
views
News: 2nd UK Bioinformatics Student Symposium on 7 Oct '15 at TGAC, Norwich
symposium
updated 5 months ago by 38k • written 7.6 years ago by ▴ 100
4
votes
0
replies
1.4k
views
News: $650M gift to Broad seeks to propel (Genomics based ) psychiatric research
sequencing
updated 20 days ago by 38k • written 8.7 years ago by ★ 5.2k
4
votes
4
replies
1.4k
views
News: VCFclin working group
vcfclin
updated 20 days ago by 38k • written 8.9 years ago by ▴ 30
3
votes
1
reply
2.5k
views
News: Ngs Session At Biocomp Bg 2012 Conference!
next-gen-sequencing
updated 4 weeks ago by 38k • written 10.9 years ago by ▴ 50
3
votes
1
reply
2.3k
views
News: Variathon V0.1 - 2013 - Comparing Existing Or New Pipelines For Variant Calling In Terms Of Accuracy And Efficiency
ngs conference
updated 4 weeks ago by 38k • written 10.1 years ago by 153k
3
votes
0
replies
4.2k
views
News: Free Online Harvardx Course, Data Analysis For Genomics, Starts April 7
methylation bioconductor ChIP-seq RNA-seq R
updated 20 days ago by 38k • written 9.0 years ago by ★ 2.2k
3
votes
0
replies
2.3k
views
News: Samtools/htslib/bcftools 1.1 released
htslib samtools
updated 18 days ago by 38k • written 8.5 years ago by 103k
3
votes
0
replies
2.8k
views
News: Introduction to Python for Biologists and Advanced Python for Biologists courses
Python
updated 11 weeks ago by 38k • written 7.8 years ago by ★ 3.7k
3
votes
0
replies
2.5k
views
News: SeqAhead - COST - Bioinformatics for Non-Coding RNAs: State-of-the-art Training Workshop: 30/6-3/7/2014, Athens, Greece
RNA-Seq workshop lncRNA microRNA
updated 20 days ago by 38k • written 8.9 years ago by ★ 1.3k
3
votes
1
reply
388
views
News: Free web seminars related to small non-coding RNA bioinformatics
smallRNA microRNA
updated 3 months ago by 38k • written 10 months ago by ▴ 60
3
votes
1
reply
1.4k
views
News: Frederick Sanger ( 1918 - 2013 )
sanger-institute
updated 25 days ago by 38k • written 9.4 years ago by 153k
3
votes
0
replies
393
views
News: Tutorial on SemiBin (metagenonomics binning tool). June 14 - online
metagenomics binning
updated 10 months ago by 127k • written 10 months ago by ▴ 60
3
votes
0
replies
961
views
News: Changes to the default NCBI BLAST nucleotide database (nt). Learn more and provide feedback!
NCBI Databases BLAST
4 months ago by PeterC_NCBI ▴ 210
3
votes
0
replies
2.9k
views
News: Statistics and R for the Life Sciences from Harvard University (Start: 19 Jan 2015)
edX statistics
updated 12 months ago by 38k • written 8.2 years ago by ★ 2.2k
3
votes
0
replies
571
views
News: Free Ensembl Browser and REST API virtual workshops in March
Ensembl REST-API genome-browser training workshop
updated 6 weeks ago by 38k • written 2.1 years ago by ▴ 270
3
votes
0
replies
1.3k
views
News: Large scale cancer RNA-Seq study (more than 5k samples were analyzed in this study)
RNA-Seq cancer
updated 9 months ago by 38k • written 8.0 years ago by 9.9k
3
votes
0
replies
1.9k
views
News: Big Data in Healthcare Symposium, Luxembourg, 28/29 October 2015
big-data conference medicine health
updated 6 months ago by 38k • written 7.6 years ago by ▴ 130
3
votes
0
replies
1.7k
views
News: Dnanexus Is Giving Away 1 Free Agbt 4-Day Badge
next-gen conference
updated 4 weeks ago by 38k • written 10.2 years ago by ▴ 30
3
votes
2
replies
3.5k
views
News: Course/Workshop: Informatics For Rna-Sequence Analysis (June, 2013)
RNA-seq
updated 4 weeks ago by 38k • written 10.2 years ago by 20k
3
votes
0
replies
3.0k
views
News: Tumorportal - A Tool For Exploring A Pan-Cancer Dataset
tcga cancer-genomics
updated 23 days ago by 38k • written 9.1 years ago by 19k
3
votes
0
replies
1.5k
views
News: Human Genome Project: Twenty-five years of big biology
Human-Genome-Project
updated 6 months ago by 38k • written 7.5 years ago by 7.0k
3
votes
0
replies
1.4k
views
News: Restructuring the 1000 Genomes FTP site
sequencing SNP alignment
updated 6 months ago by 38k • written 7.6 years ago by ★ 1.8k
3
votes
0
replies
915
views
News: ONLINE TRAINING: Environmental Metagenomics
metagenomics nanopore assembly illumina
updated 6 weeks ago by 38k • written 2.2 years ago by ★ 2.3k
3
votes
2
replies
2.4k
views
News: Samtools/htslib v1.2 released
htslib samtools bcftools
updated 11 days ago by 38k • written 8.1 years ago by 103k
3
votes
3
replies
3.6k
views
News: A Tale Of Next Generation Sequencing Platforms: Ion Torrent, Pacific Biosciences And Illumina Miseq
sequencing
updated 4 weeks ago by 38k • written 10.6 years ago by 97k
3
votes
3
replies
739
views
News: Want to automate your NGS analyses and create reproducible/scalable pipelines? Join our hands-on Nextflow workshop!
nextflow NGS pipeline
11 months ago by David Langenberger 9.9k
3
votes
0
replies
1.4k
views
News: Bioconductor Conference, July 31 - Aug 1, 2014, Boston
bioconductor
updated 20 days ago by 38k • written 8.8 years ago by 26k
460 results • Page 3 of 10
Recent Votes
Answer: multiallelic variants
Answer: LIMMA calculates identical adj.P.Val for different proteins from proteomics
Comment: Hard clip fastq
Answer: Hard clip fastq
Answer: Hard clip fastq
Answer: Hard clip fastq
Comment: Protein name in GenBank
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Recent Replies
Answer: MapSplice2 gives error if the thread count (-p value) is greater than 2 by vishal.koparde ▴ 10
Any updates??
Comment: how to know what adapter sequences to trim for RNA-seq? by lunarskye222 • 0
Do you happen to know if the middle part of this udi barcode (GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTCTACATATCTCG) is also part of the TruSeq a…
Comment: Hard clip fastq by GenoMax 127k
If you simply want the reads to be compatible in length then do not adapter trim.
Comment: Hard clip fastq by samuel ▴ 180
@ATpoint, so no adapter trimming first? Just trim the raw fastq?
Answer: Confused on strandedness, what are antisense transcripts? by dsull ★ 4.0k
RNA pol always transcribes 5' -> 3'. This has nothing to do with +/-. Think of it on the DNA level: If the mRNA made is the same sequenc…
Comment: Protein name in GenBank by GenoMax 127k
If you must do this programmatically then collect all cases where things differ in order of words (or number of words) like the example abo…
Answer: Hard clip fastq by GenoMax 127k
You can also use `reformat.sh` from [**BBMap suite**][1] as follows reformat.sh -Xmx2g in1=R1.fq.gz in2=R2.fq.gz out1=R1_trim.fq.gz …
Answer: Hard clip fastq by ATpoint 70k
Use `seqtk trimfq`. It makes sense to trim first to your desired length and then run identical downstream processing for a fair comparison.…
Comment: Protein name in GenBank by Mensur Dlakic ★ 23k
I think you either take time to do it properly, or you will end up missing some proteins. BLAST sequence search, even on 1500 genomes, can …
Comment: Log2 FC Threshold by ATpoint 70k
Since OP is using GEO2R which uses limma the appropriate function (need to run manually, GEO2R does not support) is `limma::treat()` rather…
Answer: Adding median value to VlnPlot in Seurat by Ming Tommy Tang ★ 2.9k
If you know ggplot2, you can `get_expression_data` function in here https://divingintogeneticsandgenomics.rbind.io/post/how-to-do-gene-corr…
Answer: how to know what adapter sequences to trim for RNA-seq? by Ming Tommy Tang ★ 2.9k
You may use fastp which detect adaptors by itself https://github.com/OpenGene/fastp#adapters
Answer: Variant Calling with Multiple Individuals in Freebayes by Ming Tommy Tang ★ 2.9k
It looks like you can provide multiple bam files and output a gVCF file https://github.com/freebayes/freebayes#usage
Answer: Log2 FC Threshold by Ming Tommy Tang ★ 2.9k
This is hard to say. Some genes could play a very different role, even with little change. You want to focus on the large FC genes initiall…
Answer: Log2 FC Threshold by Mensur Dlakic ★ 23k
There is no prescribed logFC that everyone follows. The point is to convince yourself and others - those reviewing your papers and grants -…
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