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News: http://crackingthebiocode.github.io : Profiles of Computational Biologists & Bioinformaticians
career
updated 18 days ago by 38k • written 8.5 years ago by 153k
6
votes
0
replies
778
views
News: CWL user support moving to https://cwl.discourse.group/; many thanks to Biostars for over 4 years of support!
cwl News thanks
updated 3.0 years ago by 70k • written 3.4 years ago by ★ 1.9k
6
votes
2
replies
871
views
News: Temporarily reduced functionality of Ensembl and Ensembl Genomes
Ensembl News
4.1 years ago by Ben_Ensembl ★ 2.2k
6
votes
1
reply
1.7k
views
News: Contest: Antibody Marathon Match Problem: ABCSpeedup
contest
updated 13 days ago by 38k • written 8.2 years ago by 153k
6
votes
5
replies
4.7k
views
News: NCBI MagicBlast ( Short read mapper )
ncbi blast hts mapper shortread News
6.5 years ago by Pierre Lindenbaum 153k
6
votes
0
replies
1.3k
views
News: Now Live: precisionFDA Hidden Treasures - Warm Up Challenge
sequencing next-gen News
updated 5.7 years ago by 127k • written 5.7 years ago by ▴ 90
6
votes
1
reply
1.8k
views
News: Massively Differential Bias Between Two Widely Used Illumina Library Preparation Methods For Small Rna Sequencing
illumina RNA-seq
updated 26 days ago by 38k • written 9.3 years ago by 9.9k
6
votes
2
replies
1.6k
views
News: Belly Button Biodiversity Project Requests Your Analysis
biodiversity project
updated 4 weeks ago by 38k • written 10.4 years ago by 11k
6
votes
2
replies
1.9k
views
News: RNA-Seq Data Analysis Workshop in Leipzig, Germany (09 - 12 October 2017)
RNA-Seq workshop NGS News
updated 5.7 years ago by • 0 • written 5.7 years ago by 9.9k
6
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0
replies
5.0k
views
News: Game Changer? Illumina Nextseq 500
illumina
updated 25 days ago by 38k • written 9.2 years ago by ★ 1.3k
6
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1
reply
2.4k
views
News: The Art of Bioinformatics Scripting. A new book in the Biostar Handbook collection.
education
updated 2.5 years ago by • 0 • written 3.4 years ago by 97k
6
votes
13
replies
1.4k
views
News: Ensembl reduced functionality: 10th March-16th April 2020
Ensembl VEP BLAT service News
6 months ago by Ben_Ensembl ★ 2.2k
6
votes
1
reply
1.7k
views
News: Are protein domains indivisible?
Athropy Domains Proteins
updated 6 days ago by 38k • written 7.8 years ago by ★ 4.2k
6
votes
9
replies
3.6k
views
News: 1000 Genomes : The Initial Phase 3 variant list and phased genotypes.
1000genomes
updated 21 days ago by 38k • written 8.8 years ago by 153k
6
votes
1
reply
2.3k
views
News: FastQC Version 0.11.1 released
genome next-gen-sequencing
updated 21 days ago by 38k • written 8.8 years ago by ★ 2.2k
6
votes
0
replies
2.0k
views
News: Biostars on Google Summer of Code 2015
meta biostars
updated 10 months ago by 38k • written 8.1 years ago by 97k
6
votes
1
reply
2.6k
views
News: GMOD Online Training 2014 coming up
galaxy chado gmod annotation
updated 21 days ago by 38k • written 8.9 years ago by 11k
6
votes
1
reply
2.6k
views
News: "Oxford University Press to Publish NAR Genomics and Bioinformatics"
journal News
3.9 years ago by Pierre Lindenbaum 153k
6
votes
0
replies
362
views
News: NGSchool2022: Machine Learning in Computational Biology
summer machine learning school ngschool ML statistics
11 months ago by kzkedzierska ▴ 290
6
votes
0
replies
1.5k
views
News: BOSC 2015 slides and videos
BOSC BOSC2015
updated 5 months ago by 38k • written 7.7 years ago by ★ 2.2k
6
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0
replies
2.5k
views
News: New Methods Section In Plos Computational Biology
publications plos
updated 4 weeks ago by 38k • written 10.1 years ago by 18k
6
votes
4
replies
1.4k
views
News: Genomic variation course at the EBI - Updated
variation 1000 Genomes Ensembl snps News
6.9 years ago by Emily 23k
5
votes
0
replies
807
views
News: sharing BiocWorkshops 2018
RNA-seq limma DESeq2 glimma edgeR News
updated 4.6 years ago by 153k • written 4.6 years ago by ★ 1.3k
5
votes
2
replies
3.2k
views
News: Summary of AGBT 2015
AGBT2015 AGBT
updated 11 days ago by 38k • written 8.1 years ago by ▴ 640
5
votes
2
replies
1.3k
views
News: Google Dataset Search
google News
updated 4.4 years ago by ▴ 10 • written 4.6 years ago by 153k
5
votes
0
replies
975
views
News: Bioinformatics Contest 2021
bioinfcontest contest bioinforussia
updated 6 weeks ago by 38k • written 23 months ago by ▴ 50
5
votes
1
reply
1.2k
views
News: Bioinformatics Contest 2017
Contest
updated 3 months ago by 38k • written 6.2 years ago by 7.0k
5
votes
0
replies
1.2k
views
News: Bioconductor 2015 conference live tweeting and materials
bioconductor R
updated 3 days ago by 38k • written 7.7 years ago by 26k
5
votes
3
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1.3k
views
News: Bioinfo-Core Conference Call, October 17, 2017 (11 am EDT USA, local times around world)
bioinfo-core
updated 6 days ago by 38k • written 5.6 years ago by 127k
5
votes
0
replies
807
views
News: Free online Ensembl REST API training
ensembl rest api jupyter python perl News
4.3 years ago by Emily 23k
5
votes
2
replies
692
views
News: The precisionFDA BioCompute Object App-a-thon has been extended to October 18!
challenge BioCompute bioinformatics News
3.7 years ago by hollystephens723 ▴ 70
5
votes
0
replies
2.8k
views
News: Penn State now offers an Online Graduate Certificate: Applied Bioinformatics
bioinformatics-education
updated 19 days ago by 38k • written 8.6 years ago by 97k
5
votes
0
replies
1.2k
views
News: NCBI Switching to https!
bioinformatics api ncbi scripts News
6.6 years ago by DCGenomics ▴ 320
5
votes
1
reply
820
views
News: New biostar-tools metaport for FreeBSD
freebsd software
18 months ago by bacon4000 ▴ 80
5
votes
1
reply
2.1k
views
News: New version of the GATB library
minia next-gen gatb dsk
updated 14 months ago by 38k • written 8.2 years ago by ▴ 730
5
votes
0
replies
1.6k
views
News: Bioinformatics Contest 2019
bioinfcontest bioinfcontest2019 bioinforussia News
4.3 years ago by dashabalashova ▴ 50
5
votes
1
reply
2.7k
views
News: Canadian Bioinformatics Workshops Series Announced For 2014
training
updated 26 days ago by 38k • written 9.3 years ago by 20k
5
votes
1
reply
987
views
News: Paid opportunity: need microbiome experts for a survey and test of robustness
survey
updated 6 weeks ago by 38k • written 2.5 years ago by 21k
5
votes
3
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1.8k
views
News: Nhgri Meeting About Human Variation Analysis Live Streaming [Now Done]
next-gen exome variation
updated 4 weeks ago by 38k • written 10.5 years ago by 11k
5
votes
0
replies
1.7k
views
News: The future of the postdoc
sequencing Postdoc
updated 9 months ago by 38k • written 8.0 years ago by ★ 1.2k
5
votes
2
replies
4.2k
views
News: GeneSCF (Gene Enrichment Tool): Advice to users
kegg GeneSCF GO annotation
updated 6 weeks ago by 38k • written 6.2 years ago by 7.4k
5
votes
2
replies
3.4k
views
News: Tuesday 10/29 Live Tour Of New Features In Integrated Genome Browser 8
genome-browser RNA-seq ChIP-seq
updated 27 days ago by 38k • written 9.4 years ago by ★ 2.3k
5
votes
1
reply
1.6k
views
News: Google Joins The Global Alliance For Genomics And Health
genomics
updated 24 days ago by 38k • written 9.1 years ago by 153k
5
votes
1
reply
2.4k
views
News: Advanced Course: R programming and development 15-16. January 2015 (Thursday-Friday), EMBL Heidelberg
programming course R
updated 18 days ago by 38k • written 8.4 years ago by ★ 1.7k
5
votes
4
replies
1.6k
views
News: 2nd International Conference on Pediatric Oncology and Pediatric Medicine
gene News
updated 6.1 years ago by 127k • written 6.1 years ago by • 0
5
votes
3
replies
1.3k
views
News: Top GitHub repos for biomedicine
GitHub software open source News
4.2 years ago by field.cady ▴ 50
5
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1
reply
3.3k
views
News: Broad Gatk Haplotypecaller Speed Improved 2-4 X By Cooperation With Intel, And Incremental Multi-Sample Calling Made Possible!
gatk variant-calling
updated 21 days ago by 38k • written 9.0 years ago by ★ 5.2k
5
votes
0
replies
1.3k
views
News: Bioinformatics in Google Summer of Code 2018
GSOC Ensembl News
5.1 years ago by Emily 23k
5
votes
3
replies
388
views
News: March 13-16: Virtual Nextflow and nf-core training event in 5 languages
nf-core pipeline Nextflow
updated 7 days ago by ▴ 230 • written 5 weeks ago by 3.4k
5
votes
0
replies
1.5k
views
News: New Bioconductor F1000Research Channel for publishing Bioconductor workflows
bioconductor reproducible-research
updated 3 days ago by 38k • written 7.7 years ago by 26k
1,000 results • Page 4 of 20
Recent Votes
A: In Seurat, How Do nCount_RNA Differ from nFeature_RNA?
smoothing or binning bigWig file
List of Ongoing and Planned Long Read Sequencing studies?
Are We Rude/Do We Expect Too Much From People Asking Questions On This Forum?
Answer: Read lengths greater than insert length
A: Changing Output From Gene ID to Symbol When Running findMarkers from Scran
Answer: BLAST Database error: No alias or index file found for nucleotide database
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Recent Replies
Comment: Most efficient way to run Diamond against a very very large database (i.e., NCBI by cfos4698 ▴ 700
Keep in mind the potential effect on e-values brought about by splitting a database into chunks then combining the results, discussed here:…
Comment: split fasta file to train deep learning model by shenwei356 7.9k
Excluding sequences containing any letter not belonging to the 20 [amino acids letters](https://github.com/shenwei356/bio/blob/master/seq/a…
Comment: split fasta file to train deep learning model by pinheirofabiano ▴ 10
@shenwei356, thank you very much for your help, perfect! But now I realized that some fasta sequences contain the letter "B", which is ou…
Comment: Most efficient way to run Diamond against a very very large database (i.e., NCBI by Mensur Dlakic ★ 23k
I think it depends on the speed of your local disks and the memory amount. On a single node, breaking up the database doesn't sound like a …
Comment: Sample size for population genetics by Jeremy Leipzig 21k
Other populations just make the model harder to generalize, not easier.
Comment: Are We Rude/Do We Expect Too Much From People Asking Questions On This Forum? by Vincent Laufer ★ 2.5k
i think there is some of that - my most upvoted comment of all time was a dismissive comment i made while extremely tired. for context i ha…
Comment: Molecular biologist / clinical pharmacologist (f/m/d) by Jeremy ▴ 770
Is this job on site in Vienna or remote?
Comment: smoothing or binning bigWig file by rls_08 ▴ 40
if you use bigwigCompare , that would not create a sliding window, but instead, it will output the mean for each bin, according to the -bin…
Comment: Sample size for population genetics by zimmer.schweiz • 0
Thank you so much for your answer. For common polygenic diseases, would it make sense to increase the number of populations sampled, in ord…
Answer: Sample size for population genetics by Jeremy Leipzig 21k
For a rare penetrant monogenic disease? A few cases. For a common polygenic disease or trait? 500k-10M
Answer: using GRanges metadata to constrain overlap searches between objects by seidel 11k
Rather than do all overlaps all the time for all samples, why not restrict the data by sample when you can. The code below works about 4 ti…
Comment: How to get gene from PSIBLAST resuts by Tom • 0
Hello, thank you for your answer, I have a question, Why the information from the GFF file and from the feature table is different? I see …
Comment: SNP ID (rsID) to Chr no. and Position by Jewahir • 0
Yeah, thank you for that!!
Comment: 1000 genomes hg38 with dbSNP rsid by Ram 38k
It should be pretty straightforward. Just to save you some pain, run these on the 1000g VCF once you download it: 1. `vt decompose -s` to …
Comment: 1000 genomes hg38 with dbSNP rsid by Vince ▴ 150
Yeah, I had some hope that I wouldn't need to mess with doing this ...
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