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1,000 results • Page
4 of 20
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Votes
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6
votes
7
replies
4.1k
views
News:
New in DiffBind: dba.plotProfile() - Peak profiles and profile heatmaps
DiffBind
ChIP-seq
deepTools
visualization
ATAC-seq
18 months ago by
Rory Stark
★ 2.0k
6
votes
1
reply
1.9k
views
News:
Massively Differential Bias Between Two Widely Used Illumina Library Preparation Methods For Small Rna Sequencing
illumina
RNA-seq
updated 13 months ago by
Ram
43k • written 10.3 years ago by
David Langenberger
11k
6
votes
1
reply
1.9k
views
News:
Contest: Antibody Marathon Match Problem: ABCSpeedup
contest
updated 12 months ago by
Ram
43k • written 9.2 years ago by
Pierre Lindenbaum
160k
6
votes
1
reply
2.9k
views
News:
"Oxford University Press to Publish NAR Genomics and Bioinformatics"
journal
updated 10 months ago by
Ram
43k • written 4.9 years ago by
Pierre Lindenbaum
160k
6
votes
1
reply
2.5k
views
News:
FastQC Version 0.11.1 released
genome
next-gen-sequencing
updated 12 months ago by
Ram
43k • written 9.8 years ago by
rtliu
★ 2.2k
6
votes
0
replies
2.5k
views
News:
http://crackingthebiocode.github.io : Profiles of Computational Biologists & Bioinformaticians
career
updated 12 months ago by
Ram
43k • written 9.5 years ago by
Pierre Lindenbaum
160k
6
votes
2
replies
1.8k
views
News:
Belly Button Biodiversity Project Requests Your Analysis
biodiversity
project
updated 13 months ago by
Ram
43k • written 11.4 years ago by
Mary
11k
6
votes
4
replies
1.3k
views
News:
Course online - Comparative Genomics
assembly
genome
next-gen
alignment
updated 9 months ago by
Ram
43k • written 3.9 years ago by
carlopecoraro2
★ 2.4k
6
votes
0
replies
950
views
News:
CWL user support moving to https://cwl.discourse.group/; many thanks to Biostars for over 4 years of support!
cwl
thanks
updated 9 months ago by
Ram
43k • written 4.4 years ago by
Michael R. Crusoe
★ 1.9k
6
votes
2
replies
2.1k
views
News:
RNA-Seq Data Analysis Workshop in Leipzig, Germany (09 - 12 October 2017)
NGS
RNA-Seq
workshop
updated 10 months ago by
Ram
43k • written 6.7 years ago by
David Langenberger
11k
6
votes
1
reply
2.9k
views
News:
The Art of Bioinformatics Scripting. A new book in the Biostar Handbook collection.
education
updated 3.5 years ago by
ghazala.bif.2k18
• 0 • written 4.4 years ago by
Istvan Albert
100k
6
votes
0
replies
5.4k
views
News:
Game Changer? Illumina Nextseq 500
illumina
updated 13 months ago by
Ram
43k • written 10.2 years ago by
IV
★ 1.3k
6
votes
9
replies
4.2k
views
News:
1000 Genomes : The Initial Phase 3 variant list and phased genotypes.
1000genomes
updated 12 months ago by
Ram
43k • written 9.8 years ago by
Pierre Lindenbaum
160k
6
votes
2
replies
2.6k
views
News:
RNA-Seq Data Analysis Workshop in Berlin, Germany (full)
NGS
RNA-Seq
workshop
updated 11 months ago by
Ram
43k • written 7.3 years ago by
David Langenberger
11k
6
votes
0
replies
2.8k
views
News:
Broad Releases Fastg Multiple Seq Assembly Format
FASTG
reference-format
updated 13 months ago by
Ram
43k • written 11.3 years ago by
William
★ 5.2k
6
votes
0
replies
1.9k
views
News:
Bioinformatics Contest 2017
contest
updated 11 months ago by
Ram
43k • written 7.2 years ago by
pavlov.ivan095
▴ 70
6
votes
4
replies
1.1k
views
News:
Upcoming online training courses
Python
R
2.6 years ago by
carlopecoraro2
★ 2.4k
6
votes
1
reply
2.8k
views
News:
GMOD Online Training 2014 coming up
galaxy
chado
gmod
annotation
updated 12 months ago by
Ram
43k • written 10.0 years ago by
Mary
11k
6
votes
2
replies
1.1k
views
News:
Temporarily reduced functionality of Ensembl and Ensembl Genomes
Ensembl
updated 10 months ago by
Ram
43k • written 5.1 years ago by
Ben_Ensembl
★ 2.3k
6
votes
4
replies
1.6k
views
News:
Genomic variation course at the EBI - Updated
Ensembl
1000Genomes
snps
variation
updated 11 months ago by
Ram
43k • written 8.0 years ago by
Emily
23k
6
votes
2
replies
1.5k
views
News:
Biostars On The Genome Technology Cover
biostars
updated 13 months ago by
Ram
43k • written 11.2 years ago by
Istvan Albert
100k
6
votes
1
reply
3.6k
views
News:
Symposium And Rna-Seq Data Analysis Workshop Charlotte May 13-14
RNA
RNA-seq
training
updated 12 months ago by
Ram
43k • written 10.0 years ago by
Ann
★ 2.4k
6
votes
4
replies
4.2k
views
News:
awesome-single-cell: a list of open-source single-cell analysis software and workshop materials
single-cell
RNA-Seq
updated 11 months ago by
Ram
43k • written 7.8 years ago by
Sean Davis
26k
6
votes
0
replies
2.7k
views
News:
New Methods Section In Plos Computational Biology
publications
plos
updated 13 months ago by
Ram
43k • written 11.1 years ago by
Casey Bergman
18k
6
votes
7
replies
2.2k
views
News:
NCBI wants to remove quality scores from SRA
quality-scores
trimming
Assembly
genome
SRA
updated 9 months ago by
Ram
43k • written 3.7 years ago by
zhousun21
▴ 40
6
votes
13
replies
2.0k
views
News:
Ensembl reduced functionality: 10th March-16th April 2020
BLAT
VEP
Ensembl
service
updated 9 months ago by
Ram
43k • written 4.1 years ago by
Ben_Ensembl
★ 2.3k
6
votes
5
replies
5.3k
views
News:
NCBI MagicBlast ( Short read mapper )
blast
ncbi
short-read
mapper
hts
updated 11 months ago by
Ram
43k • written 7.6 years ago by
Pierre Lindenbaum
160k
5
votes
0
replies
1.3k
views
News:
NCBI Switching to https!
ncbi
api
updated 11 months ago by
Ram
43k • written 7.6 years ago by
DCGenomics
▴ 330
5
votes
1
reply
1.5k
views
News:
2-day WORKSHOP on SNAKEMAKE
next-gen
updated 10 months ago by
Ram
43k • written 5.8 years ago by
carlopecoraro2
★ 2.4k
5
votes
0
replies
1.2k
views
News:
Bioinformatics Contest 2021
bioinfcontest
contest
bioinforussia
updated 13 months ago by
Ram
43k • written 2.9 years ago by
l_antonova
▴ 50
5
votes
4
replies
1.8k
views
News:
2nd International Conference on Pediatric Oncology and Pediatric Medicine
gene
updated 11 months ago by
Ram
43k • written 7.1 years ago by
pediatriconcology
• 0
5
votes
3
replies
859
views
News:
March 13-16: Virtual Nextflow and nf-core training event in 5 languages
nf-core
pipeline
Nextflow
updated 12 months ago by
Maxime Garcia
▴ 340 • written 13 months ago by
Matthias Zepper
4.5k
5
votes
0
replies
1.8k
views
News:
Bioinformatics Contest 2019
bioinforussia
bioinfcontest
bioinfcontest2019
updated 10 months ago by
Ram
43k • written 5.3 years ago by
dashabalashova
▴ 50
5
votes
0
replies
1.3k
views
News:
Bioconductor 2015 conference live tweeting and materials
bioconductor
R
updated 12 months ago by
Ram
43k • written 8.7 years ago by
Sean Davis
26k
5
votes
1
reply
3.5k
views
News:
Broad Gatk Haplotypecaller Speed Improved 2-4 X By Cooperation With Intel, And Incremental Multi-Sample Calling Made Possible!
gatk
variant-calling
updated 12 months ago by
Ram
43k • written 10.0 years ago by
William
★ 5.2k
5
votes
1
reply
1.2k
views
News:
Paid opportunity: need microbiome experts for a survey and test of robustness
survey
updated 13 months ago by
Ram
43k • written 3.5 years ago by
Jeremy Leipzig
22k
5
votes
2
replies
4.7k
views
News:
GeneSCF (Gene Enrichment Tool): Advice to users
kegg
GeneSCF
GO
annotation
updated 13 months ago by
Ram
43k • written 7.2 years ago by
EagleEye
7.5k
5
votes
0
replies
930
views
News:
sharing BiocWorkshops 2018
limma
edgeR
DESeq2
RNA-seq
glimma
updated 10 months ago by
Ram
43k • written 5.6 years ago by
Bogdan
★ 1.4k
5
votes
2
replies
1.5k
views
News:
Google Dataset Search
google
updated 10 months ago by
Ram
43k • written 5.6 years ago by
Pierre Lindenbaum
160k
5
votes
0
replies
3.0k
views
News:
Penn State now offers an Online Graduate Certificate: Applied Bioinformatics
bioinformatics-education
updated 12 months ago by
Ram
43k • written 9.6 years ago by
Istvan Albert
100k
5
votes
1
reply
1.1k
views
News:
New biostar-tools metaport for FreeBSD
freebsd
software
2.5 years ago by
bacon4000
▴ 80
5
votes
2
replies
3.7k
views
News:
Tuesday 10/29 Live Tour Of New Features In Integrated Genome Browser 8
genome-browser
RNA-seq
ChIP-seq
updated 13 months ago by
Ram
43k • written 10.4 years ago by
Ann
★ 2.4k
5
votes
2
replies
897
views
News:
The precisionFDA BioCompute Object App-a-thon has been extended to October 18!
BioCompute
challenge
updated 10 months ago by
Ram
43k • written 4.7 years ago by
hollystephens723
▴ 70
5
votes
3
replies
1.5k
views
News:
Bioinfo-Core Conference Call, October 17, 2017 (11 am EDT USA, local times around world)
bioinfo-core
updated 12 months ago by
Ram
43k • written 6.6 years ago by
GenoMax
140k
5
votes
2
replies
1.6k
views
News:
#scRNABIO & organoids meeting
single-cell-sequencing
microfluidics
organoids
updated 10 months ago by
Ram
43k • written 5.6 years ago by
aln
▴ 320
5
votes
1
reply
2.3k
views
News:
New version of the GATB library
minia
next-gen
gatb
dsk
updated 2.2 years ago by
Ram
43k • written 9.2 years ago by
edrezen
▴ 730
5
votes
3
replies
1.4k
views
News:
Top GitHub repos for biomedicine
open-source
software
GitHub
updated 10 months ago by
Ram
43k • written 5.2 years ago by
field.cady
▴ 50
5
votes
1
reply
2.6k
views
News:
Advanced Course: R programming and development 15-16. January 2015 (Thursday-Friday), EMBL Heidelberg
programming
course
R
updated 12 months ago by
Ram
43k • written 9.4 years ago by
Laurent
★ 1.7k
5
votes
0
replies
1.6k
views
News:
New Bioconductor F1000Research Channel for publishing Bioconductor workflows
bioconductor
reproducible-research
updated 12 months ago by
Ram
43k • written 8.7 years ago by
Sean Davis
26k
5
votes
0
replies
1.4k
views
News:
Bioinformatics in Google Summer of Code 2018
Ensembl
GSOC
updated 10 months ago by
Ram
43k • written 6.1 years ago by
Emily
23k
1,000 results • Page
4 of 20
Recent Votes
Answer: log2(TPM+1)
Comment: Error in openning FastQC
Comment: F*up Night style events for Bioinformatics ? Comment if you're interested!
Answer: F*up Night style events for Bioinformatics ? Comment if you're interested!
Answer: F*up Night style events for Bioinformatics ? Comment if you're interested!
Comment: F*up Night style events for Bioinformatics ? Comment if you're interested!
Comment: F*up Night style events for Bioinformatics ? Comment if you're interested!
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Recent Replies
Comment: Is it reasonable to discard reads that show variation of quality across its leng
by
BRENO
• 0
Yikes. Well, this is from an Illumina MiniSeq. Sure, I will use alignment, but only to remove host reads. Then the remaining reads will go …
Comment: Is it reasonable to discard reads that show variation of quality across its leng
by
GenoMax
140k
This is going to be tough to diagnose. Are you going to align to a reference? If so go ahead with the alignments to see if alignments turn …
Comment: Is it reasonable to discard reads that show variation of quality across its leng
by
BRENO
• 0
Thank you for replying. I have separated the reads with at least one N on them and they account for 0.2% of the total reads in the file (8'…
Comment: Error running local blastn in R using system2
by
Mensur Dlakic
★ 26k
The `-db data/nt_euk` switch means that in your current directory you have a subdirectory called `data`, and all the `nt_euk` files are in …
Comment: Low number of both surviving reads after trimming
by
Jay
• 0
Thank you for your opinion. I will try with lower LEADING and TRAILING bases. By the way, I tried to set `keepBothReads:true` through sear…
Comment: Error in openning FastQC
by
GenoMax
140k
At this point it would be beneficial to learn some of the basics of command line. Please use this UNIX tutorial since you seem to be new to…
Comment: vcf file: number of samples does not match number of columns
by
Pierre Lindenbaum
160k
> ore or have any suggestions for fixing it? it's a problem with your upstream process. You'd better fix it.
Comment: Error in openning FastQC
by
friszd
• 0
after running fastqc -o output.html input.fastq, terminal returns: " Specified output directory 'output.html' does not exist " , when i run…
Comment: Is it reasonable to discard reads that show variation of quality across its leng
by
GenoMax
140k
The question you should be looking into is why the Q scores are dropping there? Are there `N` calls indicating some issue with that cycle?
Comment: Error in openning FastQC
by
GenoMax
140k
What is `ctrl+c ctrl+v`? You may actually be killing the running fastqc process. If you run `fastqc` interactively (like what was shown ab…
Comment: F*up Night style events for Bioinformatics ? Comment if you're interested!
by
Dave Carlson
★ 1.7k
Ugh. I've definitely done this one before as well. And was none too happy about it.
Comment: Error in openning FastQC
by
friszd
• 0
fastqc -o output.html input.fastq ctrl+c ctrl+v
Comment: Error running local blastn in R using system2
by
GenoMax
140k
What do you see if you `cat nt_euk.nal`? Do the number of pieces mentioned in that file match with what you locally have?
Comment: Low number of both surviving reads after trimming
by
GenoMax
140k
It is your data and if you want to do that it is up to you. You may be throwing away essentially good data (you should remove the nextera s…
Comment: F*up Night style events for Bioinformatics ? Comment if you're interested!
by
Istvan Albert
100k
Some things never change ... the most common mistake is still the one on top there
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