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898 results • Page 4 of 18
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News: Bio-On-Magnetic-Beads (BOMB): Open platform for high-throughput nucleic acid extraction and manipulation
rna-extraction dna-extraction rna-seq
updated 11 months ago by 43k • written 5.6 years ago by ▴ 20
2
votes
3
replies
1.7k
views
News: GCCBOSC 2018: A Bioinformatics Community Conference Call for Abstracts
Galaxy-Community-Conference BOSC GCC
updated 11 months ago by 43k • written 6.2 years ago by ★ 2.2k
2
votes
0
replies
1.0k
views
News: Introduction to GWAS Workshop- Canada 9-13 September 2019
GWAS
updated 10 months ago by 43k • written 4.9 years ago by ★ 2.5k
2
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0
replies
1.2k
views
News: Coming Soon precisionFDA Hidden Treasures Warm Up Challenge, July 18 - September 12, 2017
next-gen-sequencing
updated 11 months ago by 43k • written 6.8 years ago by ▴ 90
2
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2
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2.6k
views
News: Interview Dealing with RADseq data: some tips from our instructors
NGS RADseq
updated 11 months ago by 43k • written 6.5 years ago by ★ 2.5k
2
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0
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840
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News: The deadline for Subchallenge 1 of the precisionFDA NCI-CPTAC Mislabeling Challenge is 11/4!
multi-omics challenge
updated 11 months ago by 43k • written 5.5 years ago by ▴ 40
2
votes
0
replies
1.1k
views
News: Summer Courses @ Edinburgh Genomics
workshop training courses python RNA-Seq
updated 10 months ago by 43k • written 4.9 years ago by ▴ 40
2
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0
replies
1.1k
views
News: #NGSchool2019: Machine Learning for Biomedicine
ngschool workshop training summer-school next-gen
updated 10 months ago by 43k • written 5.0 years ago by ▴ 290
2
votes
0
replies
1.3k
views
News: Scalable and Reproducible Structural Bioinformatics Workshop & Hackathon 2018
Jupyter-Notebook structural-bioinformatics
updated 11 months ago by 43k • written 6.1 years ago by ▴ 50
2
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0
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766
views
News: Interested in learning more about Bayesian Statistics?
Bayesian-Statistics R Stan
updated 10 months ago by 43k • written 4.4 years ago by ★ 2.5k
2
votes
0
replies
1.6k
views
News: 4th Annual Viral Genomics & Bioinformatics Training Course (20-24 August 2018)
next-gen virus genomics course
updated 11 months ago by 43k • written 6.3 years ago by ▴ 60
2
votes
0
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1.7k
views
News: Course - Metabolomics - Berlin, 25-29 November 2019
Metabolomics R Bioconductor
updated 10 months ago by 43k • written 4.8 years ago by ★ 2.5k
2
votes
4
replies
1.2k
views
News: Course ONLINE - RNAseq data analysis with R and Bioconductor (15-19 June)
R RNA-seq Bioconductor
updated 10 months ago by 43k • written 4.0 years ago by ★ 2.5k
2
votes
0
replies
849
views
News: Bioinformatic courses in Canada (Quebec City) this September
Unix Genomics GWAS R Python
updated 10 months ago by 43k • written 4.8 years ago by ★ 2.5k
2
votes
3
replies
2.1k
views
News: PDX Models: Tumor-stroma interaction
transcriptome pdx R ChIP-Seq
updated 11 months ago by 43k • written 6.8 years ago by ▴ 70
2
votes
0
replies
517
views
News: ONLINE COURSE-Advanced programming in R
R
updated 10 months ago by 43k • written 4.0 years ago by ★ 2.5k
2
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1
reply
1.1k
views
News: PrecisionFDA and NCI-CPTAC Mislabeling Challenge is Launching on September 24th!
precision-medicine NCI FDA proteomics.RNA
updated 11 months ago by 43k • written 5.6 years ago by ▴ 150
2
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0
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3.0k
views
News: 2nd Edition of the Biostar Handbook. New online course starts now.
biostar-handbook
updated 11 months ago by 43k • written 5.3 years ago by 100k
2
votes
0
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848
views
News: The BioCompute Object App-a-thon is now live!
app-a-thon pipeline precisionFDA
updated 10 months ago by 43k • written 4.9 years ago by ▴ 150
2
votes
0
replies
939
views
News: Course: Approaches and Computational tools for CRISPR Genome editing
Genome-Editing CRISPR
updated 10 months ago by 43k • written 4.8 years ago by ★ 2.5k
2
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0
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4.3k
views
News: Workshop: Analysis of single cell RNA-seq data
R next-gen RNA-Seq alignment
updated 11 months ago by 43k • written 6.8 years ago by ★ 2.5k
2
votes
0
replies
695
views
News: Population Genomics course
R SNP next-gen
updated 10 months ago by 43k • written 4.2 years ago by ★ 2.5k
2
votes
0
replies
721
views
News: Speciation Genomics course in Canada (September 2019)
R SNP next-gen
updated 10 months ago by 43k • written 4.8 years ago by ★ 2.5k
2
votes
0
replies
1.9k
views
News: Coding,data management and Shiny applications using RStudio for evolutionary biologists
coding data-management R shiny
updated 11 months ago by 43k • written 7.1 years ago by ▴ 110
2
votes
1
reply
1.4k
views
News: of the Galaxy: 17.05 Release, Galaxy Community Conference, and more
event galaxy paper
updated 11 months ago by 43k • written 6.9 years ago by ▴ 610
2
votes
0
replies
672
views
News: Introduction to Deep Learning; ONLINE 28th September - 1st October
Machine-Learning Deep-Learning Python
updated 10 months ago by 43k • written 3.9 years ago by ★ 2.5k
2
votes
1
reply
2.0k
views
News: Genomic Data Visualization and Interpretation Workshop
next-gen R genome RNA-Seq
updated 11 months ago by 43k • written 6.8 years ago by ★ 2.5k
2
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0
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757
views
News: Eukaryotic Metabarcoding course in Berlin. Last places left.
JAMP R metabarcoding Obitools
updated 10 months ago by 43k • written 4.3 years ago by ★ 2.5k
2
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0
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2.1k
views
News: Workshop 'Analysis of single cell RNA-seq data' . 5-9 February 2018
RNA-Seq scRNAseq
updated 11 months ago by 43k • written 6.5 years ago by ★ 2.5k
2
votes
0
replies
1.5k
views
News: UCSC Genome Browser JSON API
ucsc json api
updated 10 months ago by 43k • written 4.8 years ago by 161k
2
votes
0
replies
118
views
News: Online Course Introduction to Network Analysis and Modelling
Python Network-Analysis
updated 13 days ago by 43k • written 13 days ago by ▴ 70
2
votes
0
replies
933
views
News: R/Bioconductor for Mass Spectrometry and Proteomics course in Berlin
R Proteomics Bioconductor
updated 10 months ago by 43k • written 4.7 years ago by ★ 2.5k
2
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0
replies
2.3k
views
News: Course on "Genomic data visualisation and manipulation using Python"
genome next-gen RNA-Seq
updated 11 months ago by 43k • written 6.6 years ago by ▴ 60
2
votes
0
replies
1.3k
views
News: Introduction to genome-wide association studies (GWAS)
Unix GWAS R
updated 10 months ago by 43k • written 4.3 years ago by ★ 2.5k
2
votes
0
replies
912
views
News: Interested in learning more about GWAS? Course in Canada this September
GWAS pipeline
updated 10 months ago by 43k • written 4.8 years ago by ★ 2.5k
2
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0
replies
3.3k
views
News: "Practical GWAS Using Linux and R" Workshop
GWAS Linux R next-gen
updated 11 months ago by 43k • written 6.8 years ago by ★ 2.5k
2
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0
replies
1.3k
views
News: BIOINFORMATICS SERVICES PROVIDER - BIO KNOWLEDGE LAB, S.L.
bioinformatics-services
updated 11 months ago by 43k • written 5.5 years ago by ▴ 20
2
votes
0
replies
727
views
News: Course in Berlin: Data visualization IN R with ggplot2
dataviz R ggplot2 tidyverse
updated 10 months ago by 43k • written 4.4 years ago by ★ 2.5k
2
votes
0
replies
640
views
News: Introduction to RMarkdown
R
updated 10 months ago by 43k • written 4.7 years ago by ★ 2.5k
2
votes
0
replies
541
views
News: Comparative Genomics course in Berlin
Assembly next-gen-sequencing alignment
updated 10 months ago by 43k • written 4.2 years ago by ★ 2.5k
2
votes
6
replies
2.9k
views
News: Master in integrated systems biology / Luxembourg
systems-biology Masters-course
updated 11 months ago by 43k • written 6.8 years ago by ▴ 130
2
votes
0
replies
797
views
News: Course: RNA-seq Analyses in non-model organisms (Berlin 11-15 November 2019)
gene RNA-Seq next-gen
updated 10 months ago by 43k • written 4.9 years ago by ★ 2.5k
2
votes
0
replies
1.4k
views
News: Community Feedback - OBF mailing list issues
Biojava Biopython EMBOSS BioPerl Bioruby
updated 11 months ago by 43k • written 6.3 years ago by ★ 2.2k
2
votes
0
replies
701
views
News: Interested in Machine Learning?
Machine-Learning R
updated 10 months ago by 43k • written 3.9 years ago by ★ 2.5k
2
votes
0
replies
541
views
News: Registration open for Nextflow Summit 2023, and free online Nextflow / nf-core training
nextflow
9 months ago by Marcel Ribeiro-Dantas ▴ 470
2
votes
0
replies
1.0k
views
News: precisionFDA and Georgetown-ICBI are launching the Brain Cancer Predictive Modeling and Biomarker Discovery Challenge!
brain-tumor artificial-intelligence biomarkers
updated 10 months ago by 43k • written 4.5 years ago by ▴ 150
2
votes
0
replies
610
views
News: 2-day Nextflow training course in Berlin
workflow nextflow
updated 10 months ago by 43k • written 4.3 years ago by ★ 2.5k
2
votes
1
reply
2.6k
views
News: RNAseq data analysis with R/ Bioconductor - ONLINE COURSE
R RNA-Seq Bioconductor
updated 10 months ago by 43k • written 4.1 years ago by ★ 2.5k
1
vote
2
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1.7k
views
News: Workshop: Data analysis in high throughput biology. deadline today (2 places left)
next-gen R RNA-Seq
updated 11 months ago by 43k • written 7.0 years ago by ★ 2.5k
1
vote
0
replies
704
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News: Bioinformatics for Precision Oncology 2020 Program
cancer-biology RNA-Seq cancer
updated 10 months ago by 43k • written 4.2 years ago by ▴ 10
898 results • Page 4 of 18
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Comment: To get p-values for the TPM
A: Where To Download Pam50 Gene Set?
A: Where To Download Pam50 Gene Set?
Answer: Fail to install umap-learn in R
Answer: Fail to install umap-learn in R
Answer: Fail to install umap-learn in R
What are Tiles in Sequencing
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Recent Replies
Answer: Troubleshooting RNA-seq data with DNA contamination by haibol2017 ▴ 10
We just developed a R package to tackle this problem. Do you have stranded or unstranded RNA-seq data contaminated with gDNA? If you wou…
Comment: How to trim transcripts using information from NCBI contamination screen report by GenoMax 141k
`bbduk.sh` can use the transcripts as input. There is a `adapters.fa` included in the `resources` directory of the distribution. You can do…
Comment: PCA plot (Suggestions Needed) by swbarnes2 14k
Cross posted here (including the code used to make up the counts): https://support.bioconductor.org/p/9157911/#9157959
Comment: To get p-values for the TPM by swbarnes2 14k
RSEM returns a kind of p-value if you run it with the "prior-enhanced" option. Did you do that? Are you completely sure that's the value y…
Comment: How to trim transcripts using information from NCBI contamination screen report by Lada ▴ 30
i checked both of these programs (`bbduk` and `fastp`) and it seems they use reads as inputs (fastq formats)... how can I trim my transcrip…
Comment: AGeNT LocatIt by barslmn ★ 2.1k
He is already giving 32G, 320G for marking duplicates for exome is excessive. Is there a specific reason for using the tool?
Comment: How to convert plink files to Hapmap Format by bk11 ★ 2.3k
This looks good. Please try with using `--allow-no-sex flag` plink --bfile your_data_phenoUP --assoc --allow-no-sex --out your_data_ph…
Comment: How to convert plink files to Hapmap Format by Sofia • 0
SC899359_PC75420_A05 SC899359_PC75420_A05 0 0 0 2 SC899360_PC75415_D01 SC899360_PC75415_D01 0 0 0 2 SC899361_PC75425_H05 SC899361_PC75425_H…
Comment: How to convert plink files to Hapmap Format by bk11 ★ 2.3k
Please show me a few lines of phenotype updated .fam file. You can do `head your_data_phenoUP.fam` and paste result here. Please do not us…
Comment: GEMMA GWAS how to specify factor or numerical for covariates by Sofia • 0
Hi, I don't have a solution to your question but I followed this tutorial and was helpful to me in my analysis https://youtu.be/NusV6duyvXs…
Comment: Is it possible to get a list of representative genomes from a past RefSeq releas by GenoMax 141k
Catalog file lists the genomes included. There seem to be 71365 unique items in field 2. 2 Bacteria WP_000018326.1 4459…
Comment: How to convert plink files to Hapmap Format by Sofia • 0
yes sure ! ![enter image description here][1] [1]: /media/images/f0f94f6c-4387-4188-a1aa-19152a89
Answer: AGeNT LocatIt by Greg • 0
Give it more memory. ~10x more memory, or whatever you can give it, I had samples that weren't even close to being done after 3.5 da…
Comment: Is it possible to get a list of representative genomes from a past RefSeq releas by Bertalan_Takacs ▴ 90
Thanks! I've already tried looking through these files, I need release 83. I am trying to find this information in the .catalog file of the…
Answer: Is it possible to get a list of representative genomes from a past RefSeq releas by GenoMax 141k
Possibly. You will need to know the RefSeq release version. Check in this directory: https://ftp.ncbi.nlm.nih.gov/refseq/release/release-ca…
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