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1,000 results • Page
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News:
Announcement: Research Topic "Mechanistic, Machine Learning and Hybrid Models of the 'Other' Endocrine Regulatory Systems in Health and Disease", Vol…
systems_biology
endocrinology
machine_learning
ML
mathematical_modelling
1 hour ago by
Johannes W. Dietrich
• 0
793
votes
167
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139k
views
109 follow
News:
The Biostar Handbook. A bioinformatics e-book for beginners.
training
handbook
updated 9 weeks ago by
Biostar
2.6k • written 7.3 years ago by
Istvan Albert
100k
0
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0
replies
62
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News:
Online course: Reproducibility in Bioinformatics
Singularity
Version-Control
Docker
Containers
updated 15 hours ago by
Ram
43k • written 15 hours ago by
carlopecoraro2
★ 2.4k
0
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0
replies
54
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News:
Online course: Analysis of Prokaryotic Pangenomes (Last call)
Prokaryotic
Bacterial-Genomics
Pangenomics
updated 15 hours ago by
Ram
43k • written 16 hours ago by
carlopecoraro2
★ 2.4k
0
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0
replies
116
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News:
Online course: Introduction to GWAS
GWAS
Imputation
StatisticalPower
5 days ago by
carlopecoraro2
★ 2.4k
0
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0
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119
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News:
Online course: Adaptation Genomics
StructuralVariants
Selection
AdaptationGenomics
PopulationStructure
10 days ago by
carlopecoraro2
★ 2.4k
0
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0
replies
110
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News:
Online course: Analysis of Prokaryotic Pangenomes
BacterialGenomics
Pangenomics
10 days ago by
carlopecoraro2
★ 2.4k
0
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0
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191
views
News:
Online course on Genome Assembly and Annotation (1 seat left)
Galaxy
GenomeAssembly
GenomeAnnotation
14 days ago by
carlopecoraro2
★ 2.4k
1
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0
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133
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News:
NCBI's ClinVar now accepting somatic variation data
variation
NCBI
somatic-variants
ClinVar
14 days ago by
PeterC_NCBI
▴ 410
1
vote
1
reply
233
views
News:
EMBL Course Hands-on course for sample preparation and data analysis in proteomics
EMBLProteomics
updated 15 days ago by
dr.eldeib89
• 0 • written 7 weeks ago by
EMBL Events
▴ 10
1
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147
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News:
Learn how to create robust bioinformatics pipelines for reproducible and comparable NGS analyses
nextflow
pipeline
workshop
17 days ago by
David Langenberger
11k
8
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1
reply
242
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News:
Registration OPEN: 8th Berlin Summer School in NGS Data Analysis (June 10-14, 2024)
Workshop
DNA-Seq
RNA-Seq
Illumina
updated 17 days ago by
JohnBlue81
▴ 500 • written 22 days ago by
David Langenberger
11k
0
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0
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121
views
News:
Online course: Genome Assembly and Annotation - 3 seats left
Genome-Assembly
Galaxy
Genome-Annotation
updated 17 days ago by
Ram
43k • written 18 days ago by
carlopecoraro2
★ 2.4k
0
votes
0
replies
116
views
News:
Call for abstract: Quest for Orthologs meeting in Montreal
conference
phylogeny
comparativegenomics
orthology
evolution
19 days ago by
sina.majidian
▴ 20
8
votes
2
replies
560
views
News:
LAST CALL - Single-Cell RNA-Seq Data Analysis: A Practical Introduction (May 6-8, 2024 in Berlin)
single-cell
sequencing
23 days ago by
David Langenberger
11k
1
vote
0
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130
views
News:
shournal: A Tool for Bioinformaticians to Boost Research Reproducibility
reproducability
terminal
bash
24 days ago by
David Langenberger
11k
1
vote
1
reply
159
views
News:
Integrated Genome Browser (IGB) Office Hours
Integrated-Genome-Browser
IGB
updated 24 days ago by
Ram
43k • written 24 days ago by
IGB Helper
• 0
0
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0
replies
152
views
News:
Online course: Network Analysis in Systems Biology with R/Bioconductor
R
RNA-seq
Network-Analysis
Bioconductor
Systems-Biology
updated 24 days ago by
Ram
43k • written 25 days ago by
carlopecoraro2
★ 2.4k
0
votes
0
replies
189
views
News:
The 2024 Canadian Bioinformatics Workshops are here!
CBW
workshop
training
28 days ago by
bioinformatics.ca
• 0
0
votes
0
replies
151
views
News:
Live online course Data Manipulation with R Tidyverse, 3 and 5 of April
R
manipulation
tidyverse
data
4 weeks ago by
Sole
• 0
0
votes
0
replies
161
views
News:
Online course: Reproducibility in Bioinformatics
Docker
Singularity
WorkflowManagementSystems
Reproducibility
4 weeks ago by
carlopecoraro2
★ 2.4k
0
votes
0
replies
189
views
News:
Online course: Genome Assembly Using Oxford Nanopore Sequencing - 4 seats remaining
GenomeAssembly
Nanopore
longreads
4 weeks ago by
carlopecoraro2
★ 2.4k
0
votes
0
replies
199
views
News:
Webinar about scRNA-seq cell type prediction
scRNAseq
updated 4 weeks ago by
GenoMax
140k • written 5 weeks ago by
jenny
• 0
0
votes
0
replies
193
views
News:
Online course: Spatial Omics in R/Bioconductor
R
Spatial-Omics
Bioconductor
tidyverse
transcriptomics
updated 5 weeks ago by
Ram
43k • written 5 weeks ago by
carlopecoraro2
★ 2.4k
0
votes
0
replies
178
views
News:
Online course: Model-Based Demographic Inference from Population Genomics
Demographic-Inference
Population-Genomics
Demographic-Models
updated 5 weeks ago by
Ram
43k • written 5 weeks ago by
carlopecoraro2
★ 2.4k
0
votes
0
replies
138
views
News:
Online course: R/Bioconductor for Mass Spectrometry and Proteomics
R
Proteomics
Bioconductor
Mass-Spectrometry
updated 6 weeks ago by
Ram
43k • written 6 weeks ago by
carlopecoraro2
★ 2.4k
0
votes
0
replies
160
views
News:
Virtual Workshops with the UConn Computational Biology Core
Workshop
genomics
updated 6 weeks ago by
GenoMax
140k • written 6 weeks ago by
mia.nahom
▴ 10
0
votes
0
replies
149
views
News:
NGS Data Analysis Courses for Absolute Beginners
NGS
DNAseq
RNAseq
singlecellsequencing
DataAnalysis
6 weeks ago by
David Langenberger
11k
0
votes
0
replies
167
views
News:
Online course: Genome Assembly and Annotation
Annotation
Genome-Assembly
Nanopore
Pacbio
updated 6 weeks ago by
Ram
43k • written 6 weeks ago by
carlopecoraro2
★ 2.4k
0
votes
0
replies
141
views
News:
Online course: Computation Tumor Evolution
R
Cancer-Genomics
Tumor-Evolution
Genomics
updated 7 weeks ago by
Ram
43k • written 7 weeks ago by
carlopecoraro2
★ 2.4k
0
votes
0
replies
145
views
News:
Course live online Intro Bayesian Analyses, March 4-8, 2024
R
python
bayesian
7 weeks ago by
Sole
• 0
0
votes
1
reply
883
views
News:
FINAL CALL: RNA-Seq Data Analysis Workshop (March 11 - 14, 2024 in Berlin, Germany)
NGS
RNA-Seq
Workshop
7 weeks ago by
David Langenberger
11k
0
votes
0
replies
183
views
News:
Online course : Meta-Analysis in R
R
Meta-Analysis
Statistics
updated 7 weeks ago by
Ram
43k • written 7 weeks ago by
carlopecoraro2
★ 2.4k
1
vote
0
replies
159
views
News:
Cellosaurus release 48 is available
cell-line
biocuration
cellosaurus
knowledgebase
8 weeks ago by
Amos Bairoch
▴ 120
0
votes
0
replies
179
views
News:
Online course: Genome Assembly Using Oxford Nanopore Sequencing
Genome-Assembly
Nanopore
updated 8 weeks ago by
Ram
43k • written 8 weeks ago by
carlopecoraro2
★ 2.4k
0
votes
0
replies
206
views
News:
BLAST FASTA Files Will No Longer Be Available on the FTP Site Effective April 2024
NCBI
BLAST
8 weeks ago by
PeterC_NCBI
▴ 410
0
votes
0
replies
214
views
News:
EMBL-EBI Training | Systems biology: from large datasets to biological insight
systems
9 weeks ago by
EMBL Events
▴ 10
0
votes
0
replies
181
views
News:
Online course - Sex Chromosome Evolution
Evolution
Genomics
Sex-Chromosome
updated 9 weeks ago by
Ram
43k • written 9 weeks ago by
carlopecoraro2
★ 2.4k
0
votes
1
reply
759
views
News:
LAST CALL: Online Course - A Practical Introduction to NGS Data Analysis (February 28 - March 1, 2024)
NGS
Online-Workshop
updated 10 weeks ago by
Ram
43k • written 10 weeks ago by
David Langenberger
11k
7
votes
2
replies
1.0k
views
News:
NGS Data Analysis Workshops 2024
scRNA-seq
dna-seq
rna-seq
nextflow
10 weeks ago by
David Langenberger
11k
0
votes
0
replies
206
views
News:
Online course: Generalized Additive Models (GAMs) in R
R
Statistics
Gams
10 weeks ago by
carlopecoraro2
★ 2.4k
0
votes
0
replies
236
views
News:
Online course - Introduction to Python for biologists
Python
Programming
NGSData
10 weeks ago by
carlopecoraro2
★ 2.4k
1
vote
0
replies
171
views
News:
Online course - Introduction to Machine Learning in R for omics data
R
Omics
MachineLearning
StatisticalLearning
11 weeks ago by
carlopecoraro2
★ 2.4k
0
votes
0
replies
163
views
News:
Online course - Flow cytometry data analysis with R/Bioconductor
R
Flow-Cytometry
Bioconductor
updated 11 weeks ago by
Ram
43k • written 11 weeks ago by
carlopecoraro2
★ 2.4k
0
votes
1
reply
275
views
News:
Reminder: NCBI ClinVar XML update to accommodate somatic variants coming Jan 29, 2024
SNP
XML
ClinVar
NCBI
11 weeks ago by
PeterC_NCBI
▴ 410
4
votes
0
replies
180
views
News:
Transform Your Research with Our NGS Data Analysis Online Course!
DNAseq
NGS
Biologists
OnlineCourse
RNAseq
11 weeks ago by
David Langenberger
11k
0
votes
0
replies
215
views
News:
3rd edition of the Winter School in Bioinformatics - Online February 26 - March 1
genomics
reproducibility
phylogenomics
transcriptomics
11 weeks ago by
carlopecoraro2
★ 2.4k
0
votes
0
replies
558
views
News:
course - Reproducibility in Bioinformatics
Docker
Reproducibility
written 12 months ago by
carlopecoraro2
★ 2.4k
0
votes
1
reply
340
views
News:
Online Course - Genomic Prediction
Genomic-Prediction
Selective-Breeding
updated 12 weeks ago by
Ram
43k • written 12 weeks ago by
carlopecoraro2
★ 2.4k
0
votes
0
replies
244
views
News:
Flow cytometry data analysis with R/Bioconductor course
FlowCytometry
R
Bioconductor
3 months ago by
carlopecoraro2
★ 2.4k
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Announcement: Research Topic "Mechanistic, Machine Learning and Hybrid Models of the 'Other' Endocrine Regulatory Systems in Health and Disease", Volume II
Comment: Number of CPUs to use by DRAP for transcriptomic assmbly
Comment: Gene reads all zero for each sample
Synthetic lethality and cancer database
Answer: log2(TPM+1)
Comment: Error in openning FastQC
Comment: F*up Night style events for Bioinformatics ? Comment if you're interested!
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Answer: Mapping ortholog human and mouse transcript
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BioinfGuru
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That error is on the server side, nothing to do with you, and is very common. Usually the fix is to try again in an hour, or to insert host…
Comment: Nanopore multisample variant calling
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emilydolivo97
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hello @colindaven , Did you find a suitable tool for this purpose please ? I'm dealing with fungal dataset
Comment: How do I get the gene annotations as a text file from a genebank file?
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BioinfGuru
★ 1.6k
Can you upload or post a link to the genbank file please?
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manaswwm
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I usually perform biomaRt queries with their `getBM()` function where I list the input using `filter` and `values` option and my request in…
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Thank you for your response. I have often seen commands like dds <- estimateSizeFactors(dds) normalized_counts <- counts(dds, normalized=T…
Comment: Number of CPUs to use by DRAP for transcriptomic assmbly
by
Mohamed Abderrahmane
▴ 10
It's the case that there's no indication of multi-threading in the documentation. However, it made me wonder why the developers would restr…
Answer: Is RNAseq data from a monoclonal cell line technically considered scRNAseq?
by
Soheil
▴ 90
Bulk RNAseq from any sample is still considered a bulk sample. Running bulk RNA sequencing on a sample with any level of cell type/state c…
Comment: Is it reasonable to discard reads that show variation of quality across its leng
by
BRENO
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Yikes. Well, this is from an Illumina MiniSeq. Sure, I will use alignment, but only to remove host reads. Then the remaining reads will go …
Comment: Is it reasonable to discard reads that show variation of quality across its leng
by
GenoMax
140k
This is going to be tough to diagnose. Are you going to align to a reference? If so go ahead with the alignments to see if alignments turn …
Comment: Is it reasonable to discard reads that show variation of quality across its leng
by
BRENO
• 0
Thank you for replying. I have separated the reads with at least one N on them and they account for 0.2% of the total reads in the file (8'…
Comment: Error running local blastn in R using system2
by
Mensur Dlakic
★ 26k
The `-db data/nt_euk` switch means that in your current directory you have a subdirectory called `data`, and all the `nt_euk` files are in …
Comment: Low number of both surviving reads after trimming
by
Jay
• 0
Thank you for your opinion. I will try with lower LEADING and TRAILING bases. By the way, I tried to set `keepBothReads:true` through sear…
Comment: Error in openning FastQC
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GenoMax
140k
At this point it would be beneficial to learn some of the basics of command line. Please use this UNIX tutorial since you seem to be new to…
Comment: vcf file: number of samples does not match number of columns
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Pierre Lindenbaum
160k
> ore or have any suggestions for fixing it? it's a problem with your upstream process. You'd better fix it.
Comment: Error in openning FastQC
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friszd
• 0
after running fastqc -o output.html input.fastq, terminal returns: " Specified output directory 'output.html' does not exist " , when i run…
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