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1,000 results • Page
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715
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159
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100 follow
News:
The Biostar Handbook. A bioinformatics e-book for beginners.
training
tutorial
News
handbook
updated 4 months ago by
Biostar
1.5k • written 6.2 years ago by
Istvan Albert
96k
122
votes
42
replies
8.6k
views
21 follow
News:
Help Make Biostar Better! Add Your Feedback, Opinions And Suggestions.
biostar
meta
News
updated 6.1 years ago by
jonasmst
▴ 400 • written 10.2 years ago by
Istvan Albert
96k
81
votes
39
replies
5.9k
views
11 follow
News:
State Of Biostar - Future Directions (January 2013)
biostar
News
updated 10.0 years ago by
João Rodrigues
★ 2.5k • written 10.1 years ago by
Istvan Albert
96k
59
votes
31
replies
3.3k
views
12 follow
News:
Example of how bioinformaticians can publish in Scientific Reports (by nature publishing group) using publicly available NGS data
publication
NGS
News
updated 6.1 years ago by
helene
▴ 50 • written 6.1 years ago by
David Langenberger
9.8k
11
votes
25
replies
4.9k
views
15 follow
News:
Questions for the NCBI Next Generation Sequencing Online Workshop Can be Posted with the NCBI_NOW Tag
NCBI_NOW
News
updated 4 months ago by
Ram
37k • written 7.4 years ago by
DCGenomics
▴ 320
54
votes
24
replies
3.1k
views
12 follow
News:
Big news from Microsoft. BASH on windows.
windows
News
written 6.9 years ago by
poisonAlien
★ 3.1k
57
votes
24
replies
5.4k
views
14 follow
News:
Join us in building a bioinformatics resource: The Biostar Handbook
biostar-handbook
updated 4 months ago by
Ram
37k • written 7.4 years ago by
Istvan Albert
96k
24
votes
21
replies
5.6k
views
9 follow
News:
Misunderstood parameter of NCBI BLAST
alignment
blast
News
4.3 years ago by
Farbod
★ 3.3k
45
votes
19
replies
5.5k
views
8 follow
News:
Gamestorming For Bioinformatics
News
10.4 years ago by
Giovanni M Dall'Olio
27k
15
votes
18
replies
7.2k
views
6 follow
News:
New Free Community Tutorial Website For Bioinformatics Learning
chip-seq
snp
News
rna-seq
genome
updated 16 months ago by
Ram
37k • written 9.5 years ago by
rob234king
▴ 610
12
votes
17
replies
3.1k
views
6 follow
News:
A programming language for living cells [Cello]
dna
language
research
sequence
News
6.8 years ago by
Sukhi Singh
11k
10
votes
17
replies
2.5k
views
7 follow
News:
Tell us what you think of the ENA browser?
ena
News
updated 13 months ago by
predeus
★ 1.8k • written 6.2 years ago by
Laura
★ 1.8k
50
votes
17
replies
3.2k
views
News:
Biostars 3.0 is now under testing. It has groups, charms and other interesting features.
biostar
meta
updated 7 months ago by
Ram
37k • written 7.9 years ago by
Istvan Albert
96k
45
votes
16
replies
4.9k
views
12 follow
News:
Google announces DeepVariant
genome
deep learning
google
News
updated 5.2 years ago by
Chris Miller
22k • written 5.2 years ago by
Hussain Ather
▴ 970
21
votes
16
replies
5.0k
views
6 follow
News:
Pandora's Toolbox - a collection of bioinformatics programs
Assembly
alignment
RNA-Seq
updated 10 months ago by
Ram
37k • written 8.1 years ago by
ugly.betty77
★ 1.1k
11
votes
13
replies
2.4k
views
News:
Ensembl datacentre shut-down: Friday 26th August - Tuesday 30th August 2016
Ensembl
Maintenance
News
6.4 years ago by
Ben_Ensembl
★ 2.2k
48
votes
13
replies
24k
views
10 follow
News:
The New Grch38 Human Genome Browser Has Arrived!
ucsc
assembly
GRCh38
hg38
updated 12 months ago by
Ram
37k • written 8.9 years ago by
Giovanni M Dall'Olio
27k
6
votes
13
replies
1.4k
views
News:
Ensembl reduced functionality: 10th March-16th April 2020
Ensembl
VEP
BLAT
service
News
5 months ago by
Ben_Ensembl
★ 2.2k
21
votes
11
replies
8.7k
views
6 follow
News:
NovaSeq from Illumina (updated info)
illumina
NovaSeq
News
5.3 years ago by
GenoMax
125k
18
votes
11
replies
3.3k
views
News:
Full Genome Sequencing Service 30x whole human genome sequencing for $3,490 (project cancelled)
genome
next-gen-sequencing
updated 13 months ago by
Ram
37k • written 8.4 years ago by
hcatlin
▴ 100
14
votes
11
replies
2.2k
views
6 follow
News:
Announcing bioSyntax: Syntax highlighting for biological files
bioinformatics
computational biology
News
updated 4.8 years ago by
ababaian
▴ 50 • written 5.1 years ago by
anicet.ebou
▴ 170
11
votes
11
replies
1.2k
views
8 follow
News:
Python Data Visualization Course. Last 3 spots left
next-gen
News
updated 4.2 years ago by
JohnBlue81
▴ 300 • written 4.2 years ago by
carlopecoraro2
★ 2.2k
19
votes
11
replies
6.3k
views
News:
Solid Software Tools: Denovo Assembly/Xsq Tools Pipeline Mirrored At Biostar
News
updated 9 months ago by
Ram
37k • written 10.4 years ago by
Istvan Albert
96k
7
votes
11
replies
1.5k
views
News:
Bringing the power of Big Data to biomedical researchers
NGS
biomedical research
News
updated 5.5 years ago by
Michael Dondrup
52k • written 5.5 years ago by
Paul Kutzner
▴ 100
8
votes
10
replies
3.4k
views
News:
New versions of Minia and DSK (2.0.x)
minia
dsk
assembly
gatb
updated 9 months ago by
Ram
37k • written 8.0 years ago by
Rayan Chikhi
★ 1.5k
22
votes
10
replies
4.9k
views
News:
samtools/bcftools/htslib 1.0 released
htslib
samtools
bcftools
updated 13 months ago by
Ram
37k • written 8.5 years ago by
rtliu
★ 2.2k
9
votes
9
replies
6.7k
views
News:
NovaSeq quality analysis
sequencing
News
5.6 years ago by
Brian Bushnell
18k
0
votes
9
replies
1.9k
views
News:
Practical Genomics: From Biology to Biostatistics Workshop (Baltimore, MD)
workshop
News
updated 14 months ago by
Ram
37k • written 8.6 years ago by
Matt Shirley
10k
27
votes
9
replies
3.5k
views
News:
OSX 10.11 released 30th Sep will be "rootless"
mac
osx
updated 4 months ago by
Ram
37k • written 7.4 years ago by
John
13k
17
votes
9
replies
3.2k
views
News:
My Ncbi Curriculum Vitae Web Application: Sciencv
ncbi
job
News
updated 9.4 years ago by
Giovanni M Dall'Olio
27k • written 9.4 years ago by
Pierre Lindenbaum
152k
22
votes
9
replies
5.9k
views
News:
Epigenetics Workshop - DNA Methylation Data Analysis
bisulfite-sequencing
workshop
epigenetics
updated 4 weeks ago by
Ram
37k • written 7.7 years ago by
David Langenberger
9.8k
13
votes
9
replies
1.8k
views
News:
Inviting NEW Biostars moderators to join Biostars slack channel
moderator
slack
News
updated 4.1 years ago by
ATpoint
68k • written 4.7 years ago by
GenoMax
125k
6
votes
9
replies
3.6k
views
News:
1000 Genomes : The Initial Phase 3 variant list and phased genotypes.
News
1000genomes
updated 15 months ago by
Ram
37k • written 8.6 years ago by
Pierre Lindenbaum
152k
8
votes
8
replies
2.2k
views
News:
Coronavirus Genome Analysis: a new volume in the Biostar Handbook
biostar handbook
bioinformatics
education
News
written 2.9 years ago by
Istvan Albert
96k
12
votes
8
replies
2.9k
views
News:
'Potential Rna-Dna Binding Site In Alu Repeat', Or 'Why Should I Allow Multiple Mapping Positions When Analyzing Chipseq Data?'
chipseq
rna
binding
mapping
News
9.6 years ago by
David Langenberger
9.8k
7
votes
8
replies
1.4k
views
News:
A new Stack Exchange site for Research Computing
unix
linux
programming
News
updated 5.2 years ago by
GenoMax
125k • written 5.2 years ago by
tiagoantao
▴ 690
7
votes
8
replies
3.6k
views
News:
Next-Gen Sequencing Tutorials On Cubelp (Cranfield Bioinformatics Electronic Learning Platform)
genome
chip-seq
snp
assembly
updated 4 months ago by
Ram
37k • written 9.5 years ago by
rob234king
▴ 610
12
votes
8
replies
6.3k
views
News:
rRNA Depletion / Poly-A Selection Responsible for RNA-seq Bias
RNA-seq-bias
News
rRNA-depletion
updated 15 months ago by
Ram
37k • written 8.6 years ago by
support
▴ 640
13
votes
8
replies
2.2k
views
News:
NCBI is going to eliminate GI identifiers
GI
number
identifier
ncbi
News
6.9 years ago by
Anima Mundi
★ 2.9k
10
votes
7
replies
1.6k
views
News:
Linux for Biologists e-book (free to read online)
linux
python
galaxy
conda
virtual-machine
16 months ago by
vimalkvn
▴ 310
25
votes
7
replies
2.3k
views
6 follow
News:
Who qualifies to be a bioinformatician?
resume
bioinformatician
vc
updated 7 months ago by
Ram
37k • written 7.8 years ago by
Pierre Lindenbaum
152k
25
votes
7
replies
5.7k
views
News:
Pubmed Commons : A System That Enables Researchers To Share Their Opinions About Scientific Publications
ncbi
pubmed
News
9.3 years ago by
Pierre Lindenbaum
152k
24
votes
7
replies
4.0k
views
News:
#Bioinformatics Crowdcoding
News
updated 8.9 years ago by
Rad
▴ 800 • written 9.6 years ago by
Pierre Lindenbaum
152k
27
votes
7
replies
3.1k
views
News:
The Biostar Swarm: A Visualization
biostar
updated 14 months ago by
Ram
37k • written 10.0 years ago by
Istvan Albert
96k
13
votes
7
replies
5.1k
views
News:
Free HiSeq X Ten human genome fastq test data
HiSeq-X-Ten
Human-genome
Fastq
next-gen
updated 14 months ago by
Ram
37k • written 8.5 years ago by
rbagnall
★ 1.8k
23
votes
7
replies
3.9k
views
News:
Research accounts on GitHub
github
News
git
updated 16 months ago by
Ram
37k • written 8.7 years ago by
Pierre Lindenbaum
152k
6
votes
7
replies
4.7k
views
News:
Illumina Nextseq 500 And Hiseq X Ten: Newer Tech Lowering Cost Per Mbp
News
updated 16 months ago by
Ram
37k • written 9.1 years ago by
support
▴ 640
6
votes
7
replies
1.4k
views
News:
NCBI wants to remove quality scores from SRA
SRA
quality scores
genome
Assembly
trimming
News
updated 2.6 years ago by
GenoMax
125k • written 2.6 years ago by
zhousun21
▴ 40
12
votes
7
replies
3.2k
views
News:
Welcome Ensembl REST with more endpoints!
rest-api
News
ensembl
updated 12 months ago by
Ram
37k • written 8.3 years ago by
Denise CS
★ 5.2k
21
votes
7
replies
7.1k
views
News:
Survey: Rna-Seq Analysis For Differential Gene/Transcript Expression [Updated With Results]
rna-seq
alignment
differential
gene
transcript
News
10.2 years ago by
bodhisattvax
▴ 250
1,000 results • Page
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Deseq2 with one factor and multiple levels
Answer: Error while trying to install salmon
Answer: Forcing Installation Of DMRcate
Gene Expression Omnibus Data Mining (IA): Quick and easy download of GEO data
SNP calling
Comment: Annotating ENS codes to gene name
1000 genomes project reference panel - GRCh38
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Recent Replies
Comment: Network analysis for two Factors
by
seidel
10k
Have you looked at any tutorials? Three are many out there. ([1][1], [2][2], [3][3], [etc.][4]) Do you have a preferred language? [1]: …
Comment: ceres score in crispr screen
by
seidel
10k
Are you looking for moral support or technical support? Have you tried using it with an older version of R and bioconductor? (i.e. circa 20…
Comment: PLINK2 selecting variants based on INFO score
by
chrchang523
9.9k
If you aren't willing to provide more precise information than this, sufficient for a reader to reproduce what you're seeing, I will delete…
Answer: Error while trying to install salmon
by
Chris
▴ 10
Donwloading the package from conda (https://anaconda.org/conda-forge/boost/files?version=1.60.0) worked for me wget https://anaconda.org/…
Answer: finding error to run edgeR, error in ploting MDS and after that in model matrix
by
Gordon Smyth
★ 5.4k
First issue is that GEO series matrix files can't be read using `read.delim`. Second issue is the data are from Agilent microarrays and …
Comment: PLINK2 selecting variants based on INFO score
by
m.c.roozen
• 0
I have tried that (the .pvar file contains the "1:10586" form as ID which I mentioned above) which leads to the same output as above, 0 var…
Answer: samtools markdup in Rsamtools
by
joe
▴ 350
You can run any system command from inside R using `system()`. This works well if there is a single command without many dependencies. For …
Comment: samtools markdup in Rsamtools
by
Pierre Lindenbaum
152k
> But other solutions are also fine: bash, nextflow, snakemake
Answer: samtools markdup in Rsamtools
by
ATpoint
68k
My honest opinion: Do processing of sequencing data on the standard command line with samtools. There is no need for the added complexity t…
Comment: To batch correct or analyse separately?
by
predeus
★ 1.8k
Another great and up-to-date resource is this: https://www.sc-best-practices.org/preamble.html
Comment: PLINK2 selecting variants based on INFO score
by
chrchang523
9.9k
The --exclude file must use the same variant IDs as your .pvar file. You should elaborate on what seemed to go wrong when you tried to arr…
Comment: phylogeny
by
炫
• 0
Hello, my problem is the same as yours, did you finally solve this problem?
Comment: phylogeny
by
炫
• 0
您好,我的问题和您的一模一样,请问您这个问题最终解决了吗
Comment: Issue with hmmcalibrate during tutorial.
by
apcreyes29
• 0
If that's the case then I'll just proceed then. Thank you!
Answer: To batch correct or analyse separately?
by
ATpoint
68k
Instead of writing that all down I recommend to read the relevant part of the Bioconductor scRNA-seq book (OSCA) which covers the "how's" a…
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