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520 results • Page 1 of 11
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179
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News: course - Advanced Python programming
Programming DeepLearning Python MachineLearning
7 days ago by carlopecoraro2 ★ 2.3k
3
votes
2
replies
288
views
News: Participate in a NCBI/NIAID Virtual Codeathon: VCF Files for Population Genomics, Jul 31 - Aug 4, 2023
VCF SARS-CoV-2 NCBI Codeathon
7 days ago by PeterC_NCBI ▴ 260
0
votes
0
replies
96
views
News: Virtual Genome Annotation Workshop
annotation genome workshop
8 days ago by mia.nahom ▴ 10
0
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0
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130
views
News: Course - Longitudinal data analysis in R
Longitudinal-Data R Genomics
updated 10 days ago by 39k • written 10 days ago by ★ 2.3k
0
votes
0
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128
views
News: New version of ElasticBLAST (1.1.0) available from NCBI
ElasticBLAST BLAST. NCBI
14 days ago by PeterC_NCBI ▴ 260
0
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0
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120
views
News: Course - Introduction to CRISPR for Ecology and Evolution Studies
Genomics CRISPR
15 days ago by carlopecoraro2 ★ 2.3k
0
votes
0
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232
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News: GWAS course
GWAS R
updated 18 days ago by 39k • written 19 days ago by ★ 2.3k
0
votes
0
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197
views
News: Course - RNAseq data analysis with R/Bioconductor
RNAseq R Tidyverse Bioconductor
updated 18 days ago by 39k • written 20 days ago by ★ 2.3k
0
votes
0
replies
149
views
News: Course - Multiplex imagine analysis/ Spatial Omics
Multiplex-Image-Analysis Spatial-Omics
updated 20 days ago by 39k • written 20 days ago by ★ 2.3k
3
votes
3
replies
528
views
News: NCBI's IgBLAST version 1.21.0 is now available
IgBLAST BLAST T-Cell NCBI receptors
15 days ago by PeterC_NCBI ▴ 260
0
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0
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96
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News: course- Population genomic inference from low-coverage whole-genome sequencing data
Whole-Genome-Sequencing Population-Genomics
updated 22 days ago by 39k • written 22 days ago by ★ 2.3k
0
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0
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122
views
News: PROGRAMMING IN R : MOVING FROM BEGINNER TO ADVANCED
Programming Training R
24 days ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
133
views
News: 7th Berlin Summer School in NGS Data Analysis (September 4-8 in Berlin)
DNA-Seq Calling Variant RNA-Seq Transcriptomics
25 days ago by David Langenberger 9.9k
1
vote
0
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224
views
News: NCBI BLAST+ 2.14.0 release includes faster protein and translation search options
NCBI BLAST
27 days ago by PeterC_NCBI ▴ 260
0
votes
0
replies
162
views
News: Get Your Science going in 10 Minutes with the Biostar Handbook!
education biostarhandbook
updated 22 days ago by 39k • written 28 days ago by 98k
0
votes
0
replies
157
views
News: Course - Network Analysis in Systems Biology with R/Bioconductor
R Network-Analysis Bioconductor Systems-Biology
updated 20 days ago by 39k • written 5 weeks ago by ★ 2.3k
0
votes
0
replies
173
views
News: Course - Phylogenetic Comparative Methods in R
Comparative-Methods R Phylogenetics
updated 20 days ago by 39k • written 5 weeks ago by ★ 2.3k
0
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0
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227
views
News: GWAS course in June
GWAS
updated 22 days ago by 39k • written 6 weeks ago by ★ 2.3k
0
votes
0
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181
views
News: Single-cell RNAseq with R/Bioconductor course
scRNAseq Bioconductor R
updated 22 days ago by 39k • written 6 weeks ago by ★ 2.3k
0
votes
0
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198
views
News: Course - GENERALIZED LINEAR MODELS in R
GLM R Generalised-Linear-Model
updated 20 days ago by 39k • written 12 weeks ago by ★ 2.3k
4
votes
3
replies
3.0k
views
News: CAFE v4.0 available
phylogenetics CAFE
updated 21 days ago by 39k • written 6.2 years ago by ▴ 150
0
votes
0
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1.2k
views
News: Webinar: Mapping the single-cell atlas of the bone marrow microenvironment
webinar RNA-Seq next-gen single-cell
updated 15 hours ago by 39k • written 3.8 years ago by ▴ 450
3
votes
1
reply
796
views
News: Do you want to learn how to analyze your genomic data using R and Bioconductor?
Genomics R Bioconductor
updated 15 hours ago by 39k • written 3.9 years ago by ★ 2.3k
0
votes
0
replies
534
views
News: Training in Advanced Transcriptomics (RNASeq) Analysis @ NIH, USA
RNA-Seq sequencing
updated 15 hours ago by 39k • written 3.9 years ago by ▴ 130
0
votes
0
replies
682
views
News: Bioinformatic Analysis of Next Generation Sequencing Data @NIH
RNA-Seq epigenomics ChIP-Seq
updated 15 hours ago by 39k • written 3.9 years ago by ▴ 130
0
votes
0
replies
542
views
News: Webinar: Gen3 Data Exploration
sequence data-science gene
updated 15 hours ago by 39k • written 3.9 years ago by ▴ 10
2
votes
0
replies
718
views
News: Bioinformatic courses in Canada (Quebec City) this September
Unix Genomics GWAS R Python
updated 15 hours ago by 39k • written 3.9 years ago by ★ 2.3k
0
votes
0
replies
504
views
News: Interested Phylogenetic comparative methods?
R SNP next-gen
updated 15 hours ago by 39k • written 3.9 years ago by ★ 2.3k
0
votes
0
replies
612
views
News: BIRCH Release 3.50
transcriptomics linux osx genomics
updated 15 hours ago by 39k • written 3.9 years ago by ▴ 450
5
votes
2
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723
views
News: The precisionFDA BioCompute Object App-a-thon has been extended to October 18!
BioCompute challenge
updated 15 hours ago by 39k • written 3.9 years ago by ▴ 70
2
votes
0
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867
views
News: Metagenomics and Metabarcoding Course @ Edinburgh Genomics
metagenomics metabarcoding course workshop
updated 15 hours ago by 39k • written 3.9 years ago by ▴ 40
0
votes
0
replies
842
views
News: RNA-seq Data Analysis Workshop @ Edinburgh Genomics
Linux R RNA-Seq course
updated 18 hours ago by 39k • written 3.9 years ago by ▴ 40
0
votes
0
replies
739
views
News: Training in Statistical Analysis using R @NIH,September 4-6,2019
Analysis Statistical r-platform
updated 18 hours ago by 39k • written 3.9 years ago by ▴ 130
0
votes
0
replies
682
views
News: Do you want to improve your programming skills?
Programming Unix Bash Python
updated 18 hours ago by 39k • written 3.9 years ago by ★ 2.3k
3
votes
0
replies
1.3k
views
News: Analysis of single cell RNA-seq data - Berlin 23 -27 March 2020
scRNA-seq RNA-Seq
updated 18 hours ago by 39k • written 3.9 years ago by ★ 2.3k
0
votes
0
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759
views
News: Training in Molecular Modeling and Molecular Dynamics @NIH, August 27-30,2019
dynamics sequence RNA-Seq
updated 18 hours ago by 39k • written 3.9 years ago by ▴ 130
0
votes
0
replies
752
views
News: Cellosaurus release 31 is available
knowledgebase cell-line database
updated 18 hours ago by 39k • written 3.9 years ago by ▴ 110
0
votes
0
replies
688
views
News: Data Visualization Course in Berlin
R
updated 18 hours ago by 39k • written 3.9 years ago by ★ 2.3k
2
votes
0
replies
775
views
News: Interested in learning more about GWAS? Course in Canada this September
GWAS pipeline
updated 19 hours ago by 39k • written 3.9 years ago by ★ 2.3k
0
votes
0
replies
980
views
News: Introduction to Bioinformatics using Linux (IBUL04)
Linux RNA-Seq next-gen
updated 18 hours ago by 39k • written 3.9 years ago by ▴ 60
0
votes
0
replies
1.0k
views
News: 5 PART-FUNDED SCHOLARSHIPS for the course "The Practice of RADseq: Population Genomics Analysis with Stacks (RDSQ01)"
Genomics RAD-Seq Stacks
updated 18 hours ago by 39k • written 3.9 years ago by ▴ 60
0
votes
0
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577
views
News: Training in Variant Analysis @NIH,August 20-23
genotype next-gen biomedical
updated 19 hours ago by 39k • written 3.9 years ago by ▴ 130
8
votes
0
replies
1.1k
views
News: Final Call - Hands-On RNA-Seq Data Analysis Workshop - only 2 seats left
data-analysis RNA-Seq workshop
updated 19 hours ago by 39k • written 3.9 years ago by 9.9k
2
votes
0
replies
1.6k
views
News: Course - Metabolomics - Berlin, 25-29 November 2019
Metabolomics R Bioconductor
updated 1 day ago by 39k • written 3.9 years ago by ★ 2.3k
1
vote
0
replies
652
views
News: OmicsLogic Genomics Training Program starts July 23
genome dna genomics
updated 1 day ago by 39k • written 3.9 years ago by ▴ 340
0
votes
0
replies
700
views
News: OmicsLogic Genomics Online Program
dna next-gen alignment genomics
updated 1 day ago by 39k • written 3.9 years ago by ▴ 340
3
votes
1
reply
842
views
News: Course - Genomics with R and Bioconductor - Berlin
R Bioconductor
updated 1 day ago by 39k • written 3.9 years ago by ★ 2.3k
2
votes
0
replies
821
views
News: Course: Approaches and Computational tools for CRISPR Genome editing
Genome-Editing CRISPR
updated 1 day ago by 39k • written 3.9 years ago by ★ 2.3k
2
votes
0
replies
608
views
News: Speciation Genomics course in Canada (September 2019)
R SNP next-gen
updated 1 day ago by 39k • written 3.9 years ago by ★ 2.3k
2
votes
0
replies
1.3k
views
News: UCSC Genome Browser JSON API
ucsc json api
updated 1 day ago by 39k • written 3.9 years ago by 154k
520 results • Page 1 of 11
Recent Votes
Comment: The famous WGS dataset, Ashkenazi Trio?
Answer: BioInformatics, Software
Answer: Help with running ATAC using Encode pipeline
Answer: How to extract haplotype data from phased bcf files
Answer: How to extract haplotype data from phased bcf files
Comment: My kernel is killing the pairtools dedup script, how to prevent that?
Comment: ggsave() bug in ggplot2?
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Scholar to Pierre Lindenbaum 154k
Popular Question to mari.johnson • 0
Commentator to barslmn ★ 1.6k
Popular Question to MobiusT ▴ 10
Popular Question to akshay_ware ▴ 30
Popular Question to Daniel ▴ 30
Popular Question to eb13 ▴ 20
Recent Replies
Comment: All combinations of two columns R by Fernando • 0
The expected output would be to obtein a list of dataframes of all possible combinations of df1 column 1 and column 2 and at least one comb…
Comment: All combinations of two columns R by Basti ★ 1.5k
What would be your expected output in the example you gave ?
Comment: All combinations of two columns R by Fernando • 0
For being honest, I do not know where to start with this. This is a valid example: This would be the test df with unordered columns: `df…
Answer: how to call variants in haploid genome by raphael.B ▴ 360
Hello, you can do this using GATK Haplotype Caller using the [--sample-ploidy](https://gatk.broadinstitute.org/hc/en-us/articles/3600372256…
Comment: Difference between Allele frequency spectrum and Joint allele frequency spectrum by jena ▴ 250
> Where is the 21th comparison coming from? The bins are from 0 to 20, so you are probably missing the zero bin of no alleles (minor, deri…
Comment: All combinations of two columns R by Basti ★ 1.5k
Where are you stuck ? You need to give a reproducible example if you want a precise answer
Comment: How to extract haplotype data from phased bcf files by Lynne-95 • 0
Thanks that worked perfectly!
Answer: How to extract haplotype data from phased bcf files by Pierre Lindenbaum 154k
use %TGT (translated genotype) $ bcftools query -f '[%CHROM %POS %TGT\n]'
Comment: convert data frame with character column to data frame with integer column by Basti ★ 1.5k
You would better give an example with values because we don't know what is in each variable so we cannot give you a precise code, but seems…
Comment: RNASeq gene labeling and mRNA filter from bulkRNA data. by ATpoint 72k
This information is annotated in GTF files. You can get them for almost every annotated species from Ensembl. There is a column `gene_bioty…
Answer: DE genes across multiple scRNAseq clusters-are they significantly enriched? by ATpoint 72k
First of all, with thousands of DEGs you might want to choose a DE framework that allows testing against a fold change threshold, such as `…
Comment: PacBio Pipeline and Tools for Variant Call by Kiran ▴ 80
Thanks a lot William, I am Clear now
Comment: The famous WGS dataset, Ashkenazi Trio? by cmdcolin ★ 3.0k
what is valuable information to you
Answer: Why weblogo of biopython doesn't work? by minakshiboruahassam • 0
The weblogo3 application is giving same file even if u run the scripts separately on python standalone or whatever. The weblogo command is …
Answer: Make a BedGraph file by rfran010 ▴ 100
I would suggest bedtools makewindows to generate your 3,000bp bins then bedtools coverage to generate fraction of repeats over your windows…
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