updated 3 months ago by
Biostar
2.7k
•
written 7.4 years ago by
Istvan Albert
100k
795
votes
167
replies
141k
views
109 follow
122
votes
44
replies
11k
views
24 follow
updated 6 months ago by
Ram
43k
•
written 11.4 years ago by
Istvan Albert
100k
24
votes
21
replies
7.5k
views
9 follow
46
votes
16
replies
5.9k
views
12 follow
updated 11 months ago by
Ram
43k
•
written 6.4 years ago by
Hussain Ather
▴
990
6
votes
13
replies
2.1k
views
7
votes
11
replies
2.0k
views
updated 11 months ago by
Ram
43k
•
written 6.7 years ago by
Paul Kutzner
▴
100
11
votes
11
replies
1.8k
views
8 follow
updated 11 months ago by
Ram
43k
•
written 5.4 years ago by
carlopecoraro2
★
2.5k
14
votes
11
replies
2.9k
views
6 follow
updated 11 months ago by
Ram
43k
•
written 6.3 years ago by
anicet.ebou
▴
170
11
votes
9
replies
7.7k
views
News:
NovaSeq quality analysis
updated 11 months ago by
Ram
43k
•
written 6.8 years ago by
Brian Bushnell
20k
13
votes
9
replies
2.6k
views
7 follow
7
votes
8
replies
1.9k
views
updated 11 months ago by
Ram
43k
•
written 6.4 years ago by
tiagoantao
▴
690
38
votes
8
replies
1.6k
views
6 follow
updated 10 months ago by
Alex Reynolds
35k
•
written 10 months ago by
David Langenberger
11k
8
votes
8
replies
2.9k
views
updated 10 months ago by
Ram
43k
•
written 4.1 years ago by
Istvan Albert
100k
2
votes
7
replies
1.7k
views
6
votes
7
replies
2.2k
views
38
votes
7
replies
2.3k
views
2
votes
7
replies
1.8k
views
8
votes
6
replies
1.5k
views
updated 11 months ago by
Ram
43k
•
written 5.5 years ago by
Istvan Albert
100k
2
votes
6
replies
2.9k
views
8
votes
6
replies
17k
views
updated 11 months ago by
Ram
43k
•
written 6.4 years ago by
Ahmed Youssef
▴
70
3
votes
5
replies
1.3k
views
updated 7 months ago by
alejandrogzi
▴
120
•
written 17 months ago by
dlaehnemann
▴
30
0
votes
5
replies
1.6k
views
9
votes
5
replies
3.6k
views
News:
SAMTOOLS 1.4 released
updated 11 months ago by
Ram
43k
•
written 7.1 years ago by
Pierre Lindenbaum
161k
3
votes
5
replies
2.3k
views
7
votes
5
replies
2.6k
views
8
votes
4
replies
1.9k
views
updated 10 months ago by
Ram
43k
•
written 4.6 years ago by
Erik Garrison
★
2.4k
1
vote
4
replies
2.0k
views
6
votes
4
replies
1.3k
views
0
votes
4
replies
1.0k
views
12
votes
4
replies
2.0k
views
updated 11 months ago by
Ram
43k
•
written 5.9 years ago by
kzkedzierska
▴
290
4
votes
4
replies
1.9k
views
updated 11 months ago by
Ram
43k
•
written 6.0 years ago by
bioinformatics
▴
20
9
votes
4
replies
2.5k
views
7 follow
2
votes
4
replies
1.2k
views
updated 10 months ago by
Ram
43k
•
written 4.0 years ago by
carlopecoraro2
★
2.5k
10
votes
4
replies
1.8k
views
updated 11 months ago by
Ram
43k
•
written 5.3 years ago by
David Langenberger
11k
9
votes
4
replies
1.6k
views
4
votes
3
replies
1.0k
views
8 months ago by
PeterC_NCBI
▴
410
1
vote
3
replies
1.2k
views
updated 10 months ago by
Ram
43k
•
written 4.2 years ago by
David Langenberger
11k
2
votes
3
replies
1.7k
views
updated 11 months ago by
Ram
43k
•
written 6.2 years ago by
Chris Fields
★
2.2k
3
votes
3
replies
1.2k
views
0
votes
3
replies
1.0k
views
updated 11 months ago by
Ram
43k
•
written 5.5 years ago by
EMBL Events
▴
10
7
votes
3
replies
3.9k
views
5
votes
3
replies
1.4k
views
updated 11 months ago by
Ram
43k
•
written 5.3 years ago by
field.cady
▴
50
2
votes
3
replies
2.1k
views
updated 11 months ago by
Ram
43k
•
written 6.8 years ago by
Pine Biotech
▴
70
9
votes
3
replies
4.8k
views
4
votes
3
replies
3.2k
views
14
votes
3
replies
3.7k
views
updated 11 months ago by
Ram
43k
•
written 5.9 years ago by
lakhujanivijay
5.8k
4
votes
3
replies
3.3k
views
News:
CAFE v4.0 available
updated 11 months ago by
Ram
43k
•
written 7.1 years ago by
Ben Fulton
▴
150
2
votes
3
replies
1.4k
views
updated 11 months ago by
Ram
43k
•
written 5.6 years ago by
tpjurkowski
▴
20
0
votes
3
replies
1.4k
views
3
votes
2
replies
1.3k
views
updated 11 months ago by
Ram
43k
•
written 6.5 years ago by
Sean Davis
26k
Recent Votes
Recent Locations •
All
United States, 1 minute ago
Republic of Ireland, 8 minutes ago
China, 12 minutes ago
United States, 15 minutes ago
South Korea, 21 minutes ago
USA, 21 minutes ago
United States, 24 minutes ago
Recent Awards •
All
Popular Question to
Simone
▴
10
Popular Question to
carlopecoraro2
★
2.5k
Popular Question to
daffodil
▴
10
Popular Question to
Russ
▴
500
Popular Question to
camillab.
▴
160
Popular Question to
pramach1
▴
40
Popular Question to
Adyasha
•
0
Recent Replies
Answer: Heatmap and rna-seq
by
Kevin Blighe
87k
Hi, you can take the list of GSEA pathways and then use these via GSVA (https://github.com/rcastelo/GSVA) to create a heatmap.
You hav…
Comment: Clustering of DAVID gene enrichment results from gene expression studies
by
Kevin Blighe
87k
You will have to elaborate on what is the error
Comment: clustalo - align milions of short seq, memory issue
by
emmanouil.a
▴
120
Hi GenoMax and Mensur Dlakic, thank you for your feedback. I'm changing approach in the way to work with a smaller number of seq.
Comment: Annovar using R package
by
Pierre Lindenbaum
161k
duplicate of your previous question: https://www.biostars.org/p/9592646/
why using R when there are shell-based tools like VEP ? slivar , …
Comment: Trouble with Pilon installation
by
Lissa Cruz Saavedra
•
0
Hi
I am trying to install the software but I didn't find the way to clone from github. Could you help me with the pipeline of instruction…
Comment: Adding CB tag to bam file
by
swbarnes2
14k
I think both these programs are just adding the same tag to every line. I don't think either cares whether it's called RG or CB
Comment: PCA plot (Suggestions Needed)
by
swbarnes2
14k
Even if this was real data, the tiny numbers for the PC1 and PC2 indicate that the differences between the samples are all absolutely tiny.…
Comment: Creating Synthetic Sequences for a ML Model
by
biochugs
•
0
Thanks for the input. I'll continue to think of more ideas that may be achievable.
Comment: PCA plot (Suggestions Needed)
by
Jeremy
▴
890
You could also try kernel PCA, which is a non-linear form of PCA, although this will be more time-consuming.
Comment: Troubleshooting RNA-seq data with DNA contamination
by
DKA
▴
40
I have unstranded RNA-seq data. Please share the tool with me, if you do not mind.
Comment: PCA plot (Suggestions Needed)
by
Mensur Dlakic
★
27k
Everything that @f1f58aed said, plus that there may be no data manipulation that will give you the clusters you expected. Sometimes there a…
Answer: Creating Synthetic Sequences for a ML Model
by
Mensur Dlakic
★
27k
It is a good idea, though I don't see how it would work in practice.
I think you will encounter at least one additional problem on top of …
Answer: PCA plot (Suggestions Needed)
by
Jeremy
▴
890
Right now, the WT samples are clustering together, but you have one mutant sample off by itself, which could be an outlier. How did you sc…
Comment: Adding CB tag to bam file
by
GenoMax
141k
@yokofakun had written this: https://www.biostars.org/p/336965/
https://github.com/ruqianl/appendCB may also be useful.
Comment: Troubleshooting RNA-seq data with DNA contamination
by
GenoMax
141k
Please post information about your tool as a `tools` category post. Don't wait/ask other users to ask you.
Traffic: 2024 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6