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235 results • Page 1 of 5
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News: The Biostar Handbook. A bioinformatics e-book for beginners.
training tutorial News handbook
updated 4 months ago by 1.5k • written 6.1 years ago by 96k
11
votes
25
replies
4.9k
views
15 follow
News: Questions for the NCBI Next Generation Sequencing Online Workshop Can be Posted with the NCBI_NOW Tag
NCBI_NOW News
updated 4 months ago by 37k • written 7.3 years ago by ▴ 320
57
votes
24
replies
5.4k
views
14 follow
News: Join us in building a bioinformatics resource: The Biostar Handbook
biostar-handbook
updated 4 months ago by 37k • written 7.4 years ago by 96k
50
votes
17
replies
3.2k
views
News: Biostars 3.0 is now under testing. It has groups, charms and other interesting features.
biostar meta
updated 6 months ago by 37k • written 7.8 years ago by 96k
21
votes
16
replies
5.0k
views
6 follow
News: Pandora's Toolbox - a collection of bioinformatics programs
Assembly alignment RNA-Seq
updated 10 months ago by 37k • written 8.1 years ago by ★ 1.1k
6
votes
13
replies
1.3k
views
News: Ensembl reduced functionality: 10th March-16th April 2020
Ensembl VEP BLAT service News
4 months ago by Ben_Ensembl ★ 2.1k
19
votes
11
replies
6.3k
views
News: Solid Software Tools: Denovo Assembly/Xsq Tools Pipeline Mirrored At Biostar
News
updated 9 months ago by 37k • written 10.4 years ago by 96k
8
votes
10
replies
3.4k
views
News: New versions of Minia and DSK (2.0.x)
minia dsk assembly gatb
updated 9 months ago by 37k • written 8.0 years ago by ★ 1.5k
22
votes
9
replies
5.9k
views
News: Epigenetics Workshop - DNA Methylation Data Analysis
bisulfite-sequencing workshop epigenetics
updated 25 days ago by 37k • written 7.6 years ago by 9.8k
27
votes
9
replies
3.5k
views
News: OSX 10.11 released 30th Sep will be "rootless"
mac osx
updated 4 months ago by 37k • written 7.3 years ago by 13k
8
votes
8
replies
2.1k
views
News: Coronavirus Genome Analysis: a new volume in the Biostar Handbook
biostar handbook bioinformatics education News
written 2.9 years ago by 96k
7
votes
8
replies
3.6k
views
News: Next-Gen Sequencing Tutorials On Cubelp (Cranfield Bioinformatics Electronic Learning Platform)
genome chip-seq snp assembly
updated 3 months ago by 37k • written 9.4 years ago by ▴ 610
25
votes
7
replies
2.3k
views
6 follow
News: Who qualifies to be a bioinformatician?
resume bioinformatician vc
updated 6 months ago by 37k • written 7.8 years ago by 152k
17
votes
7
replies
8.4k
views
News: Upcoming NGS Workshop: A Beginner's Guide to NGS Data Analysis
workshop Assembly transcriptomics RNA-Seq
updated 10 months ago by 37k • written 8.2 years ago by 9.8k
6
votes
7
replies
2.5k
views
News: New in DiffBind: dba.plotProfile() - Peak profiles and profile heatmaps
DiffBind ChIP-seq deepTools visualization ATAC-seq
4 months ago by Rory Stark ★ 1.6k
10
votes
7
replies
1.9k
views
News: Free draft copy of book on bioinformatics tools
alignment Assembly RNA-seq next-gen
updated 9 days ago by 37k • written 7.7 years ago by ★ 1.1k
9
votes
6
replies
1.8k
views
News: No more hidden solutions in bioinformatics
precision-medicine genome-sequencing
updated 9 days ago by 37k • written 7.7 years ago by ★ 1.2k
1
vote
6
replies
541
views
News: Course - FLOW CYTOMETRY ANALYSIS WITH R/BIOCONDUCTOR
Bioconductor FlowCytometry R
updated 15 days ago by ▴ 70 • written 6 weeks ago by ★ 2.2k
14
votes
6
replies
6.4k
views
News: FINAL CALL: NGS Workshop - A Beginner's Guide to NGS Data Analysis (2 last seats)
NGS RNA-Seq workshop
updated 7 weeks ago by 37k • written 7.6 years ago by 9.8k
1
vote
5
replies
542
views
News: Cancer Genomics course - 2 seats left
CancerGenomics Genomics R Bioinformatics
updated 18 days ago by ★ 2.2k • written 21 days ago by ★ 2.2k
10
votes
4
replies
565
views
News: Good morning
good morning
updated 4 months ago by 96k • written 4 months ago by 84k
0
votes
4
replies
361
views
News: Ensembl Release 104 and newer GTF files no longer have genes sorted by position
Ensembl GTF
updated 6 weeks ago by ★ 2.1k • written 9 weeks ago by ▴ 10
14
votes
4
replies
3.0k
views
News: FULL: NGS Data Analysis Workshop for Beginners in Munich (29 June - 1 Juli 2016)
RNA-Seq next-gen NGS
updated 6 months ago by 37k • written 7.0 years ago by 9.8k
8
votes
4
replies
1.5k
views
News: supporting vg users on biostars
vg graph vgteam genome News variation
updated 6 weeks ago by 4.4k • written 3.4 years ago by ★ 2.3k
3
votes
4
replies
1.7k
views
News: OmicCircos was updated
R OmicCircos
updated 8 months ago by 37k • written 7.9 years ago by ▴ 50
0
votes
4
replies
1.7k
views
News: What NGS courses would you like us to prepare for 2016? (one week left)
NGS Survey Workshop
updated 5 months ago by 37k • written 7.1 years ago by 9.8k
1
vote
4
replies
1.4k
views
News: Bioconductor Development Visualization
bioconductor
updated 6 months ago by 37k • written 7.8 years ago by 26k
20
votes
3
replies
2.3k
views
News: Nature Comment: Core services: Reward bioinformaticians
career-path
updated 7 months ago by 37k • written 7.8 years ago by ★ 2.2k
18
votes
3
replies
2.1k
views
News: LAST CALL: Next-Generation Sequencing Data Analysis: A Practical Introduction (Frankfurt, Germany) - 2 seats left
DNA-Seq NGS Workshop Variant-Calling
updated 6 months ago by 37k • written 5.9 years ago by 9.8k
2
votes
3
replies
271
views
News: NCBI Comparative Genome Viewer now allows searches for genes across aligned assemblies
Browser NCBI Alignments Genome
6 weeks ago by PeterC_NCBI ▴ 180
3
votes
3
replies
704
views
News: Want to automate your NGS analyses and create reproducible/scalable pipelines? Join our hands-on Nextflow workshop!
nextflow NGS pipeline
9 months ago by David Langenberger 9.8k
0
votes
3
replies
400
views
News: NCBI BLAST ClusteredNR database now available for blastx and PSI-BLAST searches
PSI-BLAST blastx BLAST NCBI ClusteredNR
23 days ago by PeterC_NCBI ▴ 180
4
votes
3
replies
1.7k
views
News: Proteomics and Genomics Submit your Research Journals
Research Genomics Journals Proteomics
updated 8 weeks ago by 37k • written 7.6 years ago by • 0
0
votes
3
replies
940
views
News: Less Than One Month Remaining until the Submission Deadline for Phase 1 of the NCTR Indel Calling from Oncopanel Sequencing Data Challenge!
oncopanel indel-calling
updated 6 weeks ago by 37k • written 7 months ago by ▴ 10
0
votes
3
replies
367
views
News: Nvidia Clara Parabricks is FREE for R&D
nvidia workflow gpu
updated 6 weeks ago by 2.6k • written 6 weeks ago by 152k
0
votes
2
replies
404
views
News: Seascape Genomics in R
Genomics Seascape R
updated 7 weeks ago by 37k • written 3 months ago by ★ 2.2k
1
vote
2
replies
385
views
News: New chat server (Discord) for bioinformatics
community
20 days ago by Samuel Lampa ★ 1.3k
0
votes
2
replies
2.1k
views
News: MinION Community Meeting: Thursday Dec 3rd (now live)
minion
updated 5 months ago by 37k • written 7.2 years ago by 96k
7
votes
2
replies
2.1k
views
News: Annotation of Zebrafish pri-miRNAs promoters and CAGE-seq detected active Drosha processing events.
Drosha-processing moRNAs pri-miRNAs zebrafish
updated 5 months ago by 37k • written 7.1 years ago by ★ 2.3k
1
vote
2
replies
232
views
News: Course: Network Analysis in R
NetworkAnalyis R
6 days ago by carlopecoraro2 ★ 2.2k
0
votes
2
replies
1.8k
views
News: NVIDIA GPU Conference sponsorship for Biostars + updated advertising terms
biostars meta
updated 9 months ago by 37k • written 8.0 years ago by 96k
0
votes
2
replies
866
views
News: :: FINAL CALL :: Next-Generation Sequencing Data Analysis: A Practical Introduction (December 12-14, 2022 in Munich, Germany)
rnaseq dnaseq sequencing ngs workshop
10 weeks ago by David Langenberger 9.8k
1
vote
2
replies
508
views
News: Online training - Introduction to Nextflow
Bionfirmatics Pipeline Workflow Netflow
5 months ago by carlopecoraro2 ★ 2.2k
15
votes
2
replies
10k
views
News: Breaking News - Illumina MiniSeq
next-gen-sequencing
updated 6 months ago by 37k • written 7.1 years ago by ★ 1.3k
0
votes
2
replies
503
views
News: Online Course - A Practical Introduction to NGS Data Analysis (February 01-03, 2023)
NGS DNAseq variant-calling RNAseq
5 days ago by David Langenberger 9.8k
3
votes
2
replies
3.5k
views
News: Course/Workshop: Informatics For Rna-Sequence Analysis (June, 2013)
rna-seq News
updated 4 months ago by 37k • written 10.1 years ago by 20k
2
votes
2
replies
1.7k
views
News: BioC 2015, Bioconductor Annual Conference, July 20-22, Seattle, WA
Bioconductor Conference
updated 6 months ago by 37k • written 7.8 years ago by ★ 1.6k
1
vote
2
replies
282
views
News: Gene Set Enrichment Analysis in R/Bioconductor
Gene-Set-Enrichment-Analysis R Cancer-Genomics GSEA
12 weeks ago by carlopecoraro2 ★ 2.2k
2
votes
2
replies
459
views
News: ISO usability testers for NCBI comparative genome viewer
comparative eukaryotic alignment pangenome
12 months ago by SanjidaR_NCBI ▴ 20
0
votes
2
replies
527
views
News: ClusteredNR NCBI BLAST database provides faster searches and more informative BLAST results
NCBI BLAST
8 months ago by PeterC_NCBI ▴ 180
235 results • Page 1 of 5
Recent Votes
A: Using ColSums vs sizeFactors in read count normalization
Comment: a problem with getBM
C: Reorder heatmap rows in a dataset with missing values
A: Difference between GTF file with CHR and without CHR. ENSEMBL
Answer: Base recalibration in normal vs. tumor somatic variant calling in WXS data?
A: from .BAM to .BAI using samtools
Comment: bgzip error 4
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Teacher to ATpoint 68k
Popular Question to tianshenbio ▴ 160
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Recent Replies
Answer: how to do a reliable single cell sequencing analysis? by ATpoint 68k
The usual approach for starters would be to follow guided and well-accepted tutorials. That would (incomplete list) be: - The Biocon…
Answer: a problem with getBM by sanaz • 0
head(ensembl_ids) X baseMean log2FoldChange lfcSE stat pvalue padj 1 ENSG00000000938.13 1344.2587 2.107…
Answer: Recommendations needed for a tool for comparative gene set enrichment analyses v by fuellen ▴ 20
Hello and Thanks! OK, I should have written "The gene lists I have prepared" instead of "The DEG lists I have prepared". In any case, is …
Comment: a problem with getBM by Mike Smith ★ 1.9k
Can you update your post to show some examples of what's in your `ensembl_ids` object? Perhaps the contents of `head(ensembl_ids)`. It's …
Answer: trainGlimmerHMM Error while training a genome by congliu37 • 0
Hello, I got the same error using ~20,000 genes for training and it was solved by reducing training gene set. I assume GlimmerHMM was no…
Comment: How to Calulate Allele Frequency from a VCF File? by Jeremy Leipzig 21k
That's correct. You don't have biallelic alleles in mitochondria, so you can use either the Allele depth (AD) or depth of coverage (DP) for…
Comment: How to calculate tumor mutation burden (TMB)? by Fabio Marroni ★ 2.9k
I just published a [post][1] on my blog, in which I include a simple R function for computing TMB. Try to see if that helps. I followed the…
Comment: Gene Set Enrichment Analysis, pathway, metabolism by Rob ▴ 160
Thank you FrankStarling, ATpoint, jv, these were so helpful.
Comment: translate CDS to prot formatted with nt nubers by Pierre Lindenbaum 152k
> with nucleotide numbers and DNA/prot aligned line by line what does it mean ? Create a Minimal, Reproducible Example to enable others t…
Comment: How to translate CDS to an amino acid sequence by vvasta • 0
I tried several of the online DNA translation tools but have not found one that would output DNA/prot alignment with nucleotide number w…
Comment: How possible deadlocks are there while migrating from MYISAM to InnoDb? by Pierre Lindenbaum 152k
but you already knew it. https://www.biostars.org/p/9551097/#9551098
Comment: How possible deadlocks are there while migrating from MYISAM to InnoDb? by Pierre Lindenbaum 152k
your question is not related to bioinformatics. Ask stackoverflow.com.
Comment: Statistical test for checking cis regulation? by Fabio Marroni ★ 2.9k
Hi lumos. It is not very clear to me what kind of information are you using for the test and how are you measuring cis-regulation. Are you …
Comment: Error 134 while aligning using hisat2 by Fabio Marroni ★ 2.9k
Other instances of the same error were indeed related to disk [space][1]. Can you post the output of the command: `df -h /bams/`? Another p…
Comment: **Error: unable to open file or unable to determine types for file** by Pierre Lindenbaum 152k
``` Please ensure that your file is TAB delimited (e.g., cat -t FILE). - Also ensure that your file has integer chromosome coordinates in t…
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