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News: The Biostar Handbook. A bioinformatics e-book for beginners.
training handbook
updated 4 weeks ago by 1.8k • written 6.5 years ago by 98k
0
votes
0
replies
115
views
News: course - Advanced Python programming
Programming DeepLearning Python MachineLearning
1 day ago by carlopecoraro2 ★ 2.3k
3
votes
2
replies
268
views
News: Participate in a NCBI/NIAID Virtual Codeathon: VCF Files for Population Genomics, Jul 31 - Aug 4, 2023
VCF SARS-CoV-2 NCBI Codeathon
2 days ago by PeterC_NCBI ▴ 260
0
votes
0
replies
91
views
News: Virtual Genome Annotation Workshop
annotation genome workshop
3 days ago by mia.nahom ▴ 10
0
votes
0
replies
125
views
News: Course - Longitudinal data analysis in R
Longitudinal-Data R Genomics
updated 5 days ago by 39k • written 5 days ago by ★ 2.3k
0
votes
0
replies
127
views
News: New version of ElasticBLAST (1.1.0) available from NCBI
ElasticBLAST BLAST. NCBI
9 days ago by PeterC_NCBI ▴ 260
0
votes
0
replies
116
views
News: Course - Introduction to CRISPR for Ecology and Evolution Studies
Genomics CRISPR
10 days ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
222
views
News: GWAS course
GWAS R
updated 13 days ago by 39k • written 13 days ago by ★ 2.3k
0
votes
0
replies
194
views
News: Course - RNAseq data analysis with R/Bioconductor
RNAseq R Tidyverse Bioconductor
updated 13 days ago by 39k • written 14 days ago by ★ 2.3k
0
votes
0
replies
147
views
News: Course - Multiplex imagine analysis/ Spatial Omics
Multiplex-Image-Analysis Spatial-Omics
updated 15 days ago by 39k • written 15 days ago by ★ 2.3k
3
votes
3
replies
508
views
News: NCBI's IgBLAST version 1.21.0 is now available
IgBLAST BLAST T-Cell NCBI receptors
10 days ago by PeterC_NCBI ▴ 260
0
votes
0
replies
94
views
News: course- Population genomic inference from low-coverage whole-genome sequencing data
Whole-Genome-Sequencing Population-Genomics
updated 17 days ago by 39k • written 17 days ago by ★ 2.3k
0
votes
0
replies
120
views
News: PROGRAMMING IN R : MOVING FROM BEGINNER TO ADVANCED
Programming Training R
19 days ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
124
views
News: 7th Berlin Summer School in NGS Data Analysis (September 4-8 in Berlin)
DNA-Seq Calling Variant RNA-Seq Transcriptomics
19 days ago by David Langenberger 9.9k
1
vote
0
replies
213
views
News: NCBI BLAST+ 2.14.0 release includes faster protein and translation search options
NCBI BLAST
22 days ago by PeterC_NCBI ▴ 260
0
votes
0
replies
157
views
News: Get Your Science going in 10 Minutes with the Biostar Handbook!
education biostarhandbook
updated 17 days ago by 39k • written 23 days ago by 98k
0
votes
0
replies
153
views
News: Course - Network Analysis in Systems Biology with R/Bioconductor
R Network-Analysis Bioconductor Systems-Biology
updated 15 days ago by 39k • written 4 weeks ago by ★ 2.3k
0
votes
0
replies
170
views
News: Course - Phylogenetic Comparative Methods in R
Comparative-Methods R Phylogenetics
updated 15 days ago by 39k • written 4 weeks ago by ★ 2.3k
0
votes
2
replies
703
views
News: 20% Off - Next-Generation Sequencing Data Analysis: A Practical Introduction (May 3-5, 2023 in Munich, Germany)
NGS DNA-Seq variant-calling RNA-Seq workshop
4 weeks ago by David Langenberger 9.9k
1
vote
0
replies
193
views
News: Course - Statistics for biologists with R
Statistics R
4 weeks ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
224
views
News: GWAS course in June
GWAS
updated 17 days ago by 39k • written 5 weeks ago by ★ 2.3k
1
vote
1
reply
294
views
News: 20% Off - Bioinformatics Pipeline Development with Nextflow (May 15-17 in Leipzig, Germany)
NGS nextflow RNAseq pipelines DNAseq
5 weeks ago by David Langenberger 9.9k
0
votes
0
replies
176
views
News: Single-cell RNAseq with R/Bioconductor course
scRNAseq Bioconductor R
updated 17 days ago by 39k • written 5 weeks ago by ★ 2.3k
0
votes
0
replies
120
views
News: Environmental Metagenomics - 17-21 April
MAGs Metagenomics
updated 6 weeks ago by 39k • written 6 weeks ago by ★ 2.3k
1
vote
0
replies
189
views
News: Announcing the 3rd round of the Nextflow and nf-core mentorship
nf-core mentorship nf_core nextflow
updated 6 weeks ago by 39k • written 6 weeks ago by ▴ 360
1
vote
0
replies
210
views
News: New open access publication on ElasticBLAST in BMC Bioinformatics
NCBI ElasticBLAST BLAST
8 weeks ago by PeterC_NCBI ▴ 260
0
votes
0
replies
203
views
News: Pangenomics course in April!
Pangenomics Prokaryotic-Genomics
8 weeks ago by carlopecoraro2 ★ 2.3k
1
vote
0
replies
212
views
News: Talk from Aaron Lun on Orchestrating Single-Cell Analysis With Bioconductor
scrna-seq
updated 8 weeks ago by 39k • written 8 weeks ago by 72k
0
votes
0
replies
160
views
News: Cellosaurus release 45 is available
knowledgebase news cell line
8 weeks ago by Amos Bairoch ▴ 110
0
votes
0
replies
144
views
News: Virtual RAD-seq Analysis Workshop!
workshops popgen genomics rad-seq
8 weeks ago by mia.nahom ▴ 10
0
votes
0
replies
324
views
News: The Canadian Bioinformatics Workshops are back for summer 2023
CBW training workshop
8 weeks ago by bioinformatics.ca • 0
0
votes
0
replies
210
views
News: ISMB-affiliated virtual tutorial on Neo4j/Cypher for life sciences
neo4j cypher graph knowledge
9 weeks ago by Stephen • 0
0
votes
0
replies
191
views
News: Announcing workshop on Declarative Programming in Biology and Medicine (Seattle, Sept. 2023)
medicine declmed declarative icfp precision
7 weeks ago by Stephen • 0
0
votes
0
replies
148
views
News: Course live online Introduction to Bayesian Analyses using R, May 8th-12th, 2023
bayesian RProject course online
9 weeks ago by Sole • 0
0
votes
0
replies
161
views
News: course - Reproducibility in Bioinformatics
Docker Reproducibility
updated 9 weeks ago by 39k • written 9 weeks ago by ★ 2.3k
0
votes
2
replies
445
views
News: Course - Metagenomics, metatranscriptomics, and multi'omics for microbial community Studies
Metagenomics Metatranscriptomics Multiomics
updated 10 weeks ago by 39k • written 10 weeks ago by ★ 2.3k
10
votes
4
replies
735
views
News: RNA-Seq Data Analysis Workshop - Join us in Berlin, Germany from March 27-30, 2023!
NGS transcriptomics workshop
updated 10 weeks ago by ▴ 30 • written 3 months ago by 9.9k
1
vote
0
replies
455
views
News: Summer School in Bioinformatics
Genomics Docker RNA-seq
updated 10 weeks ago by 39k • written 10 weeks ago by ★ 2.3k
1
vote
1
reply
364
views
News: Sign-ups for the St. Jude KIDS23 BioHackathon (May 3-5th) open through March 15th!
stjude hackathon
10 weeks ago by jared.andrews07 ★ 14k
1
vote
0
replies
229
views
News: Course - BIOINFORMATIC ANALYSIS OF TRANSPOSABLE ELEMENTS
Transposable-Elements TE Genome-Assembly
updated 10 weeks ago by 39k • written 10 weeks ago by ★ 2.3k
0
votes
0
replies
190
views
News: Environmental Metagenomics course
Environmental-Metagenomics
updated 11 weeks ago by 39k • written 11 weeks ago by ★ 2.3k
0
votes
0
replies
196
views
News: Course - GENERALIZED LINEAR MODELS in R
GLM R Generalised-Linear-Model
updated 15 days ago by 39k • written 11 weeks ago by ★ 2.3k
1
vote
0
replies
260
views
News: Virtual Single Cell RNA-seq Workshop
single genomics cell expression rna-seq workshop gene
12 weeks ago by mia.nahom ▴ 10
1
vote
0
replies
246
views
News: Advanced Bayesian statistics in R course
Statistics RegressionModeling Bayesian R
12 weeks ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
173
views
News: Course - INTRODUCTION TO THE ANALYSIS OF LONGITUDINAL DATA WITH R
Genomics LongitudinalData R
12 weeks ago by carlopecoraro2 ★ 2.3k
1
vote
0
replies
368
views
News: The GDC Legacy Archive is retiring soon.
genomic-data-commons tcga gdc
updated 12 weeks ago by 39k • written 12 weeks ago by ▴ 800
0
votes
0
replies
249
views
News: course MULTIVARIATE DATA ANALYSIS WITH R AND VEGAN
Vegan MULTIVARIATEDATAANALYSIS Statistics R
3 months ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
209
views
News: course - single-cell RNAseq with R/Bioconductor
Bioconductor single-cell genomics RNAseq
updated 11 weeks ago by 39k • written 3 months ago by ★ 2.3k
0
votes
0
replies
338
views
News: Course - Analysis of PROKARYOTIC PANGENOMES
Genomics Pangenomes
updated 3 months ago by 39k • written 3 months ago by ★ 2.3k
5
votes
3
replies
493
views
News: March 13-16: Virtual Nextflow and nf-core training event in 5 languages
nf-core pipeline Nextflow
updated 9 weeks ago by ▴ 230 • written 3 months ago by 3.7k
1,000 results • Page 1 of 20
Recent Votes
Answer: IGV displays genomic coordinates in a 1-based system or 0-based?
RNAseq expression data log2 transformed has negative values.
Samtools: "Too Many Open Files"
Filtering bad quality probes in illumina microarray data
gene filtering for agilent microarray using Limma
A: Identification Of Significant Differences Between Phylogentic Trees Using Distan
A: How to filter vcf file on minimum genotype depth and quality for each sample
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Popular Question to Sam ▴ 150
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Recent Replies
Answer: Counting intronic reads in bulk RNA-seq by swbarnes2 13k
Are you sure this is appropriate for bulk RNASeq? I thought intronic reads for single cell were only counted in nuclear preps.
Answer: Single cell chemistry by swbarnes2 13k
Are you sure these samples are 10x? How likey is it that the sequencing group messed up and ran the samples wrongly?
Comment: How to deal with duplicated gene IDs in TCGA RNA expression data? by Vincent Laufer ★ 2.8k
are they distinct transcript IDs but the same gene ID? can you provide any additional context?
Comment: SyntaxError (Perhaps you forgot a comma?) in snakefile when running FastQC. by Dhatri Badri • 0
that didn't work either
Answer: Why are some WES VCFs larger than others? by Vincent Laufer ★ 2.8k
Hi @kermit and prash (and others)! Nice discussion. I wanted to offer some **biological rationales** in addition to the technical reasons …
Answer: SyntaxError (Perhaps you forgot a comma?) in snakefile when running FastQC. by WouterDeCoster 47k
There is no `:` after `rule fastqc`
Comment: SyntaxError (Perhaps you forgot a comma?) in snakefile when running FastQC. by Dhatri Badri • 0
sorry that was a typo while i was copying my code! I still get the same error
Comment: too many zeros in 16S rRNA amplicon sequencing data by andres.firrincieli 3.3k
You have too many ASV (40k) and I think this is a problem related to the denoising (DADA2) of NovaSeq 6000 sequencing data. Maybe this post…
Answer: SyntaxError (Perhaps you forgot a comma?) in snakefile when running FastQC. by Pierre Lindenbaum 154k
> fastq.gz". what is the dot after `fastq.gz" ` ?
Comment: DownsampleSam by Pierre Lindenbaum 154k
1) I think this is just a warning 2) there must be another error displayed 3) look at samtools view --subsample 4) don't use loops but use…
Comment: ABySS genome assembler by npavliukovec • 0
Hello, yes, I tried it, but I have to do my home work on university's remote computer, unfortunatelly I go an error, when I try to use abys…
Comment: desgin a primer for CDS by yuxiang • 0
how can you know the primer is not bind to other gene site? how can you desgin an experiment? I use the FISH to identify the gene, how abo…
Comment: desgin a primer for CDS by yuxiang • 0
sorry for my late reply, I am a student, my profossor ask me to dsgin a primer for the specific cDNA, I have solved now, thanks for your re…
Comment: vg: Mapping fewer reads to a genome graph than a linear reference by samuel.a.odonnell ▴ 470
In this case filtering for quality might help correct for this overattributing feature?
Comment: ABySS genome assembler by GenoMax 129k
Did you see this guidance from ABySS manual: https://github.com/bcgsc/abyss#optimizing-the-parameters-k-and-kc
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