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News: The Biostar Handbook. A bioinformatics e-book for beginners.
training handbook
updated 6 weeks ago by 1.8k • written 6.5 years ago by 98k
122
votes
42
replies
9.0k
views
21 follow
News: Help Make Biostar Better! Add Your Feedback, Opinions And Suggestions.
meta biostars
updated 3 months ago by 39k • written 10.5 years ago by 98k
81
votes
39
replies
6.2k
views
11 follow
News: State Of Biostar - Future Directions (January 2013)
biostars
updated 3 months ago by 39k • written 10.4 years ago by 98k
59
votes
31
replies
3.7k
views
12 follow
News: Example of how bioinformaticians can publish in Scientific Reports (by nature publishing group) using publicly available NGS data
publication NGS
updated 8 weeks ago by 39k • written 6.4 years ago by 9.9k
11
votes
25
replies
5.1k
views
15 follow
News: Questions for the NCBI Next Generation Sequencing Online Workshop Can be Posted with the NCBI_NOW Tag
NCBI_NOW
updated 10 weeks ago by 39k • written 7.7 years ago by ▴ 330
54
votes
24
replies
3.4k
views
12 follow
News: Big news from Microsoft. BASH on windows.
windows
updated 9 weeks ago by 39k • written 7.2 years ago by ★ 3.1k
57
votes
24
replies
5.6k
views
14 follow
News: Join us in building a bioinformatics resource: The Biostar Handbook
biostar-handbook
updated 8 months ago by 39k • written 7.7 years ago by 98k
24
votes
21
replies
6.1k
views
9 follow
News: Misunderstood parameter of NCBI BLAST
blast alignment
updated 14 days ago by 39k • written 4.7 years ago by ★ 3.4k
45
votes
19
replies
5.7k
views
8 follow
News: Gamestorming For Bioinformatics
gamestorming
updated 3 months ago by 39k • written 10.7 years ago by 27k
15
votes
18
replies
7.4k
views
6 follow
News: New Free Community Tutorial Website For Bioinformatics Learning
ChIP-seq genome snp RNA-seq
updated 3 months ago by 39k • written 9.9 years ago by ▴ 610
51
votes
17
replies
3.3k
views
News: Biostars 3.0 is now under testing. It has groups, charms and other interesting features.
meta biostars
updated 3 months ago by 39k • written 8.2 years ago by 98k
10
votes
17
replies
2.7k
views
7 follow
News: Tell us what you think of the ENA browser?
ena
updated 8 weeks ago by 39k • written 6.6 years ago by ★ 1.8k
12
votes
17
replies
3.4k
views
6 follow
News: A programming language for living cells [Cello]
dna sequence research language
updated 9 weeks ago by 39k • written 7.2 years ago by 11k
21
votes
16
replies
5.2k
views
6 follow
News: Pandora's Toolbox - a collection of bioinformatics programs
Assembly alignment RNA-Seq
updated 14 months ago by 39k • written 8.4 years ago by ★ 1.1k
45
votes
16
replies
5.1k
views
12 follow
News: Google announces DeepVariant
genome deep-learning google
updated 21 days ago by 39k • written 5.5 years ago by ▴ 970
11
votes
13
replies
2.5k
views
News: Ensembl datacentre shut-down: Friday 26th August - Tuesday 30th August 2016
Maintenance Ensembl
updated 8 weeks ago by 39k • written 6.8 years ago by ★ 2.2k
48
votes
13
replies
25k
views
10 follow
News: The New Grch38 Human Genome Browser Has Arrived!
ucsc assembly GRCh38 hg38
updated 16 months ago by 39k • written 9.3 years ago by 27k
6
votes
13
replies
1.5k
views
News: Ensembl reduced functionality: 10th March-16th April 2020
BLAT VEP Ensembl service
updated 1 day ago by 39k • written 3.3 years ago by ★ 2.2k
7
votes
11
replies
1.6k
views
News: Bringing the power of Big Data to biomedical researchers
NGS biomedical-research
updated 24 days ago by 39k • written 5.8 years ago by ▴ 100
18
votes
11
replies
3.5k
views
News: Full Genome Sequencing Service 30x whole human genome sequencing for $3,490 (project cancelled)
genome next-gen-sequencing
updated 17 months ago by 39k • written 8.7 years ago by ▴ 100
21
votes
11
replies
8.9k
views
6 follow
News: NovaSeq from Illumina (updated info)
illumina NovaSeq
updated 8 weeks ago by 39k • written 6.4 years ago by 130k
14
votes
11
replies
2.4k
views
6 follow
News: Announcing bioSyntax: Syntax highlighting for biological files
computational-biology
updated 21 days ago by 39k • written 5.4 years ago by ▴ 170
11
votes
11
replies
1.3k
views
8 follow
News: Python Data Visualization Course. Last 3 spots left
next-gen
updated 14 days ago by 39k • written 4.6 years ago by ★ 2.3k
19
votes
11
replies
6.4k
views
News: Solid Software Tools: Denovo Assembly/Xsq Tools Pipeline Mirrored At Biostar
SOLID
updated 3 months ago by 39k • written 10.8 years ago by 98k
8
votes
10
replies
3.5k
views
News: New versions of Minia and DSK (2.0.x)
minia dsk assembly gatb
updated 14 months ago by 39k • written 8.3 years ago by ★ 1.5k
22
votes
10
replies
5.0k
views
News: samtools/bcftools/htslib 1.0 released
htslib samtools bcftools
updated 17 months ago by 39k • written 8.8 years ago by ★ 2.2k
13
votes
9
replies
1.9k
views
News: Inviting NEW Biostars moderators to join Biostars slack channel
slack moderator
updated 16 days ago by 39k • written 5.0 years ago by 130k
6
votes
9
replies
3.7k
views
News: 1000 Genomes : The Initial Phase 3 variant list and phased genotypes.
1000genomes
updated 3 months ago by 39k • written 9.0 years ago by 154k
9
votes
9
replies
7.0k
views
News: NovaSeq quality analysis
sequencing
updated 27 days ago by 39k • written 6.0 years ago by 18k
27
votes
9
replies
3.6k
views
News: OSX 10.11 released 30th Sep will be "rootless"
mac osx
updated 9 months ago by 39k • written 7.7 years ago by 13k
0
votes
9
replies
2.0k
views
News: Practical Genomics: From Biology to Biostatistics Workshop (Baltimore, MD)
workshop
updated 3 months ago by 39k • written 8.9 years ago by 10k
17
votes
9
replies
3.3k
views
News: My Ncbi Curriculum Vitae Web Application: Sciencv
ncbi
updated 3 months ago by 39k • written 9.7 years ago by 154k
22
votes
9
replies
6.1k
views
News: Epigenetics Workshop - DNA Methylation Data Analysis
bisulfite-sequencing workshop epigenetics
updated 5 months ago by 39k • written 8.0 years ago by 9.9k
12
votes
8
replies
3.0k
views
News: 'Potential Rna-Dna Binding Site In Alu Repeat', Or 'Why Should I Allow Multiple Mapping Positions When Analyzing Chipseq Data?'
chipseq rna
updated 3 months ago by 39k • written 9.9 years ago by 9.9k
8
votes
8
replies
2.3k
views
News: Coronavirus Genome Analysis: a new volume in the Biostar Handbook
biostar-handbook education
updated 1 day ago by 39k • written 3.3 years ago by 98k
7
votes
8
replies
1.5k
views
News: A new Stack Exchange site for Research Computing
unix linux
updated 22 days ago by 39k • written 5.5 years ago by ▴ 690
13
votes
8
replies
2.3k
views
News: NCBI is going to eliminate GI identifiers
ncbi GI
updated 9 weeks ago by 39k • written 7.2 years ago by ★ 2.9k
7
votes
8
replies
3.8k
views
News: Next-Gen Sequencing Tutorials On Cubelp (Cranfield Bioinformatics Electronic Learning Platform)
genome chip-seq snp assembly
updated 8 months ago by 39k • written 9.8 years ago by ▴ 610
12
votes
8
replies
6.5k
views
News: rRNA Depletion / Poly-A Selection Responsible for RNA-seq Bias
rRNA-depletion RNA-seq-bias
updated 3 months ago by 39k • written 8.9 years ago by ▴ 640
25
votes
7
replies
5.8k
views
News: Pubmed Commons : A System That Enables Researchers To Share Their Opinions About Scientific Publications
ncbi pubmed
updated 3 months ago by 39k • written 9.6 years ago by 154k
10
votes
7
replies
2.1k
views
News: Free draft copy of book on bioinformatics tools
alignment Assembly RNA-seq next-gen
updated 4 months ago by 39k • written 8.1 years ago by ★ 1.1k
13
votes
7
replies
5.2k
views
News: Free HiSeq X Ten human genome fastq test data
HiSeq-X-Ten Human-genome Fastq next-gen
updated 18 months ago by 39k • written 8.9 years ago by ★ 1.8k
21
votes
7
replies
7.2k
views
News: Survey: Rna-Seq Analysis For Differential Gene/Transcript Expression [Updated With Results]
transcript RNA-seq gene
updated 3 months ago by 39k • written 10.5 years ago by ▴ 250
25
votes
7
replies
2.4k
views
6 follow
News: Who qualifies to be a bioinformatician?
resume bioinformatician vc
updated 11 months ago by 39k • written 8.1 years ago by 154k
10
votes
7
replies
1.9k
views
News: Linux for Biologists e-book (free to read online)
linux python galaxy conda virtual-machine
20 months ago by vimalkvn ▴ 310
23
votes
7
replies
4.1k
views
News: Research accounts on GitHub
github git
updated 3 months ago by 39k • written 9.1 years ago by 154k
27
votes
7
replies
3.2k
views
News: The Biostar Swarm: A Visualization
biostars
updated 3 months ago by 39k • written 10.3 years ago by 98k
24
votes
7
replies
4.1k
views
News: #Bioinformatics Crowdcoding
crowd-coding
updated 3 months ago by 39k • written 9.9 years ago by 154k
12
votes
7
replies
3.4k
views
News: Welcome Ensembl REST with more endpoints!
ensembl rest-api
updated 3 months ago by 39k • written 8.7 years ago by ★ 5.2k
6
votes
7
replies
4.9k
views
News: Illumina Nextseq 500 And Hiseq X Ten: Newer Tech Lowering Cost Per Mbp
Illumina
updated 3 months ago by 39k • written 9.4 years ago by ▴ 640
1,000 results • Page 1 of 20
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Why do so many biomarker based classifiers claim high accuracy but rarely used in clinical setting?
Java memory issue in GATK
Answer: ChatGPT optimized for bioinformatics questions
Answer: ChatGPT optimized for bioinformatics questions
Comment: ChatGPT optimized for bioinformatics questions
ChatGPT optimized for bioinformatics questions
ChatGPT optimized for bioinformatics questions
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Answer: Creating a local version of Clustered NR database by PeterC_NCBI ▴ 260
Thanks @genomax > This seems reasonable since it should capture significant part of sequence to search against ( 90% identity and 90% …
Comment: If I execute "AddOrReplaceReadGroups" on a sarted and duplicate-marked .bam fil by Pierre Lindenbaum 154k
1) read groups should have been specified from the start (eg. with bwa mem -R ) 2) if you do'nt specify SORT_ORDER, the order is the same …
Comment: Asking for feedback on a Python library for computing alignments by Alexander ▴ 100
Does it support substitution matrices - e.g. blossum62 - for local protein alignments ? Does it support different gaps for gat open, and …
Comment: ChatGPT optimized for bioinformatics questions by Alexander ▴ 100
May be you can consider to make a talk about that work for your community "sciBerloga" - see previous talks: https://www.youtube.com/@SciBe…
Answer: where to obtain hg19 reference transcriptome in gencode by GenoMax 130k
[**On this page**][1] Transcriptome: https://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_human/release_43/GRCh37_mapping/gencode.v43lift…
Comment: GSEA application not launching by GenoMax 130k
If you have not, look in "System settings" and "security" to see if the OS is blocking the application from launching.
Comment: Decoding MM and ML tags in .SAM file by Alex Reynolds 35k
I made changes to how I decode m6A events and updated links in the answer above. Python code is in a separate repository. Javascript code i…
Comment: How do I calculate differential expression for RNA-seq values with the "limma" p by John • 0
So the manual uses CPM instead of TPM. Do I need to adjust the formulae they use, or is it still the same? Also, in the manual, it uses a …
Answer: synteny viewer by cmdcolin ★ 3.0k
I compile a large list of visualization tools, here are all tools I have tagged "comparative" which can include synteny viewers https://cmd…
Comment: Limma returned only positive logFC values by melissachua90 ▴ 40
Thank you for your kind comments.
Comment: ChatGPT optimized for bioinformatics questions by Sasha ▴ 360
hi Jesse - we're hoping to build custom lab specific private experiences for folks. You can check it out here and reach out if you're inter…
Comment: ChatGPT optimized for bioinformatics questions by Sasha ▴ 360
This is awesome prodding. Will definitely try to address this use case; especially it being more explicit with the citations back to papers…
Comment: ChatGPT optimized for bioinformatics questions by Sasha ▴ 360
Awesome - will take a look!
Answer: ChatGPT optimized for bioinformatics questions by Alexander ▴ 100
Thanks for sharing ! I asked about score calculation answer is quite good , though the last example seems not fully correct ![enter i…
Comment: Filtering genes after TPM normalization by Meisam ▴ 180
While not a fan of it, I’ve seen papers where authors used a cpm or tpm value cutoff of 1 to filter their count table. Since this threshold…
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