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897 results • Page 1 of 18
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795
votes
167
replies
141k
views
109 follow
News: The Biostar Handbook. A bioinformatics e-book for beginners.
training handbook
updated 3 months ago by 2.7k • written 7.4 years ago by 100k
122
votes
44
replies
11k
views
24 follow
News: Help Make Biostar Better! Add Your Feedback, Opinions And Suggestions.
meta biostars
updated 5 months ago by 43k • written 11.4 years ago by 100k
24
votes
21
replies
7.5k
views
9 follow
News: Misunderstood parameter of NCBI BLAST
blast alignment
updated 11 months ago by 43k • written 5.6 years ago by ★ 3.4k
46
votes
16
replies
5.9k
views
12 follow
News: Google announces DeepVariant
genome deep-learning google
updated 11 months ago by 43k • written 6.4 years ago by ▴ 990
6
votes
13
replies
2.1k
views
News: Ensembl reduced functionality: 10th March-16th April 2020
BLAT VEP Ensembl service
updated 10 months ago by 43k • written 4.2 years ago by ★ 2.4k
14
votes
11
replies
2.9k
views
6 follow
News: Announcing bioSyntax: Syntax highlighting for biological files
computational-biology
updated 11 months ago by 43k • written 6.3 years ago by ▴ 170
7
votes
11
replies
2.0k
views
News: Bringing the power of Big Data to biomedical researchers
NGS biomedical-research
updated 11 months ago by 43k • written 6.7 years ago by ▴ 100
11
votes
11
replies
1.8k
views
8 follow
News: Python Data Visualization Course. Last 3 spots left
next-gen
updated 11 months ago by 43k • written 5.4 years ago by ★ 2.5k
13
votes
9
replies
2.6k
views
7 follow
News: Inviting NEW Biostars moderators to join Biostars slack channel
slack moderator
6 months ago by GenoMax 141k
11
votes
9
replies
7.7k
views
News: NovaSeq quality analysis
sequencing
updated 11 months ago by 43k • written 6.8 years ago by 20k
38
votes
8
replies
1.6k
views
6 follow
News: What happens when a bioinformatician has his own genome sequenced for $300?
DNAseq DNA WGS
updated 10 months ago by 35k • written 10 months ago by 11k
7
votes
8
replies
1.9k
views
News: A new Stack Exchange site for Research Computing
unix linux
updated 11 months ago by 43k • written 6.4 years ago by ▴ 690
8
votes
8
replies
2.9k
views
News: Coronavirus Genome Analysis: a new volume in the Biostar Handbook
biostar-handbook education
updated 10 months ago by 43k • written 4.1 years ago by 100k
2
votes
7
replies
1.8k
views
News: Beyond pest control: What can we learn from parasites?
docking heme parasitism in-silico
updated 11 months ago by 43k • written 5.1 years ago by 54k
2
votes
7
replies
1.7k
views
News: Bioinformatics workshop or training courses
RNA-Seq next-gen ChIP-Seq
updated 11 months ago by 43k • written 5.7 years ago by ▴ 140
38
votes
7
replies
2.2k
views
News: 2 last seats available - 7th Berlin Summer School in NGS Data Analysis (September 4-8 in Berlin)
Transcriptomics DNA-Seq Variant-Calling RNA-Seq
9 months ago by David Langenberger 11k
6
votes
7
replies
2.2k
views
News: NCBI wants to remove quality scores from SRA
quality-scores trimming Assembly genome SRA
updated 10 months ago by 43k • written 3.8 years ago by ▴ 40
8
votes
6
replies
17k
views
News: Bioinformatics PhD Programs in the US
education PhD
updated 11 months ago by 43k • written 6.4 years ago by ▴ 70
8
votes
6
replies
1.5k
views
News: Illumina to Acquire Pacific Biosciences
pacbio illumina
updated 11 months ago by 43k • written 5.5 years ago by 100k
2
votes
6
replies
2.9k
views
News: Master in integrated systems biology / Luxembourg
systems-biology Masters-course
updated 11 months ago by 43k • written 6.8 years ago by ▴ 130
7
votes
5
replies
2.6k
views
News: Physalia-Course: Introduction to Linux and workflows for biologists (Berlin)
next-gen Unix Assembly alignment
updated 11 months ago by 43k • written 7.1 years ago by ★ 2.5k
0
votes
5
replies
1.6k
views
News: LAST CALL - 'Introduction to NGS Data Analysis' course in Berlin, October 8-10 2018
NGS training RNA-Seq DNA-Seq
updated 11 months ago by 43k • written 5.9 years ago by 11k
9
votes
5
replies
3.6k
views
News: SAMTOOLS 1.4 released
samtools
updated 11 months ago by 43k • written 7.1 years ago by 161k
3
votes
5
replies
2.3k
views
News: (18 August - "Enzyme Stability Prediction") A free webinar on on-going CAFA5 (Critical Assessment of Functional Annotation of proteins) challenge
gene-ontology CAFA protein
8 months ago by Alexander ▴ 220
3
votes
5
replies
1.3k
views
News: Ensembl Release 104 and newer GTF files no longer have genes sorted by position
Ensembl GTF
updated 7 months ago by ▴ 120 • written 17 months ago by ▴ 30
6
votes
4
replies
1.3k
views
News: Course online - Comparative Genomics
assembly genome next-gen alignment
updated 10 months ago by 43k • written 4.0 years ago by ★ 2.5k
2
votes
4
replies
1.2k
views
News: Course ONLINE - RNAseq data analysis with R and Bioconductor (15-19 June)
R RNA-seq Bioconductor
updated 10 months ago by 43k • written 4.0 years ago by ★ 2.5k
0
votes
4
replies
1.0k
views
News: Pan-Structural Variation hackathon in the Cloud!
SV sequencing
updated 10 months ago by 43k • written 4.2 years ago by 9.7k
9
votes
4
replies
1.6k
views
News: Human Cell Atlas Data Coordination Platform Data Release Questionaire
RNA-Seq
updated 11 months ago by 43k • written 6.2 years ago by ★ 1.8k
4
votes
4
replies
1.9k
views
News: 12th International Conference on Advancements in Bioinformatics and Drug Discovery
genome Computational-Biology
updated 11 months ago by 43k • written 6.0 years ago by ▴ 20
12
votes
4
replies
2.0k
views
News: #NGSchool2018 summer school in bioinformatics
NGSchool Personalised-Medicine Nanopore
updated 11 months ago by 43k • written 5.9 years ago by ▴ 290
1
vote
4
replies
2.0k
views
News: webserver of TCGA data www.tcgaportal.org
genome RNA-Seq TCGA gene
updated 11 months ago by 43k • written 5.9 years ago by ▴ 40
10
votes
4
replies
1.8k
views
News: 3rd Berlin Summer School in NGS Data Analysis (2 seats just became available)
NGS RNA-Seq DNA-Seq
updated 11 months ago by 43k • written 5.3 years ago by 11k
9
votes
4
replies
2.5k
views
7 follow
News: fastp 0.22 released, with new FASTQ deduplication feature.
fastp
updated 9 months ago by 43k • written 2.7 years ago by ★ 2.5k
8
votes
4
replies
1.9k
views
News: supporting vg users on biostars
variation-graph genome vg vgteam
updated 10 months ago by 43k • written 4.6 years ago by ★ 2.4k
3
votes
3
replies
1.2k
views
News: NCBI's IgBLAST version 1.21.0 is now available
IgBLAST BLAST T-Cell NCBI receptors
11 months ago by PeterC_NCBI ▴ 410
2
votes
3
replies
1.7k
views
News: GCCBOSC 2018: A Bioinformatics Community Conference Call for Abstracts
Galaxy-Community-Conference BOSC GCC
updated 11 months ago by 43k • written 6.2 years ago by ★ 2.2k
0
votes
3
replies
1.4k
views
News: :: FINAL CALL :: A Practical Introduction to NGS Data Analysis (Nov 29 - Dec 1, 2023 in Munich, Germany) - only 2 seats left
DNA-Seq NGS RNA-Seq Workshop
5 months ago by David Langenberger 11k
4
votes
3
replies
3.3k
views
News: CAFE v4.0 available
phylogenetics CAFE
updated 11 months ago by 43k • written 7.1 years ago by ▴ 150
7
votes
3
replies
3.9k
views
News: Visualizing genomic data: techniques and challenges. Our interview with Dr. Malachi Griffith, Dr. Obi Griffith and Mr. Zachary Skidmore (The Griffith…
R RNA-Seq genome NGSdata
updated 11 months ago by 43k • written 6.8 years ago by ★ 2.5k
5
votes
3
replies
1.4k
views
News: Top GitHub repos for biomedicine
open-source software GitHub
updated 11 months ago by 43k • written 5.3 years ago by ▴ 50
4
votes
3
replies
3.2k
views
News: -max_target_seqs 1 in NCBI standalone BLAST does not do what you think it does
blast
updated 11 months ago by 43k • written 5.5 years ago by 11k
0
votes
3
replies
1.0k
views
News: EMBO | EMBL Symposium: Seeing is Believing - Imaging the Molecular Processes of Life
image-analysis
updated 11 months ago by 43k • written 5.5 years ago by ▴ 10
4
votes
3
replies
1.0k
views
News: You may need to cleanup duplicate NCBI BLAST nt database volumes on your system
databases NCBI BLAST
8 months ago by PeterC_NCBI ▴ 410
9
votes
3
replies
4.8k
views
News: Bioinformatics Contest 2020. Call for problems
contest
updated 10 months ago by 43k • written 4.6 years ago by ▴ 920
14
votes
3
replies
3.7k
views
News: Updated: Conference/Symposium/Seminar/Workshop alert 2018-2019
seminar symposium conference
updated 11 months ago by 43k • written 5.9 years ago by 5.8k
1
vote
3
replies
1.2k
views
News: 4th Berlin Summer School in NGS Data Analysis - October 5-9, 2020
NGS RNA-Seq DNA-Seq
updated 10 months ago by 43k • written 4.2 years ago by 11k
2
votes
3
replies
1.4k
views
News: Bio-On-Magnetic-Beads (BOMB): Open platform for high-throughput nucleic acid extraction and manipulation
rna-extraction dna-extraction rna-seq
updated 11 months ago by 43k • written 5.6 years ago by ▴ 20
2
votes
3
replies
2.1k
views
News: PDX Models: Tumor-stroma interaction
transcriptome pdx R ChIP-Seq
updated 11 months ago by 43k • written 6.8 years ago by ▴ 70
8
votes
2
replies
2.3k
views
News: The bioinformatics chat is a new podcast about bioinformatics. In the first episode we discuss Scallop, a transcriptome assembler
podcast Assembly RNA-Seq
updated 11 months ago by 43k • written 7.0 years ago by ▴ 120
897 results • Page 1 of 18
Recent Votes
Comment: Ideal PC configurations and operating system for bioinformatics laboratory
RNA-seq power estimation using ssizeRNA program
Answer: WGCNA preservation analysis
Comment: Ideal PC configurations and operating system for bioinformatics laboratory
ISCN annotation for SV/CN VCF files
Comment: How to convert plink files to Hapmap Format
Am I crazy, or are most published RNA-seq studies vastly underpowered?
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Popular Question to AdviceSeeker • 0
Great Question to Ann ★ 2.4k
Scholar to marco.barr ▴ 80
Popular Question to Kash ▴ 110
Scholar to GenoMax 141k
Scholar to anovak ▴ 120
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Recent Replies
Comment: How to slice a gvcf file with tabix? by Sd • 0
I already have gvcfs called by chromosome and there are 24 gvcfs per sample which I merged them into a single gvcf per sample. Now I want …
Comment: Find subcluster under a cluster, find differential genes in one cluster between by bk11 ★ 2.3k
First, could you please explain any reason for not using Seurat V5 approach for your data integration mentioned in [here][1]? > Now moving…
Comment: How do I use the STARSolo aligner with MGI DNBelab C series HT scRNAseq librarie by atowns21 • 0
So I'd take the json file located [here][1] and essentially create the whitelist to be all possible combinations of the position 1-10 barco…
Comment: TCGA2STAT Error: Firehose connection by Ngrin • 0
Hey Gnana, could you find a way to solve the issue? I have the same error
Comment: How do I use the STARSolo aligner with MGI DNBelab C series HT scRNAseq librarie by GenoMax 141k
You simply need to make a list of barcodes one on each line: https://kb.10xgenomics.com/hc/en-us/articles/115004506263-What-is-a-barcode-wh…
Comment: Ideal PC configurations and operating system for bioinformatics laboratory by GenoMax 141k
> What specifications and operating system would be ideal for my case? For choice of OS: Linux to access the large pool of open source sof…
Comment: How to convert plink files to Hapmap Format by bk11 ★ 2.3k
Ok. First update your phenotypes because in the 6th column all the values are -9 meaning missing, and then run `--assoc`. You can do the fo…
Comment: Ideal PC configurations and operating system for bioinformatics laboratory by i.sudbery 19k
You'll probably get away with using one of the other analysis pipelines, like Alevin-fry with much less than 128GB of RAM. Workstations can…
Comment: Difference between samtools "-f 9" and "-f 11" by Dylan • 0
> (which is weird, if it's in proper pair, read and its mate should be both mapped) So that was my thought as well, I think the code you l…
Comment: Ideal PC configurations and operating system for bioinformatics laboratory by Ram 43k
> several single cell samples At the same time? You need a server, not a PC. Google around (and search the site as well with keyword "conf…
Answer: Difference between samtools "-f 9" and "-f 11" by Pierre Lindenbaum 161k
9: read must be paired AND mate must be unmapped 11: read must be paired AND mapped in proper pair AND mate must be unmapped (which is w…
Comment: How to convert plink files to Hapmap Format by Sofia • 0
the data is binary and associated with a disease but we're studying only the cases and there are other phenotypes of severity
Comment: Cell barcode whitelists for DNBelab C Series High-throughput Single-cell RNA Ser by atowns21 • 0
could you share an example command of using STARSolo for the alignment? Did you use the json file directly? Or do you have to re-format the…
Comment: How to trim transcripts using information from NCBI contamination screen report by GenoMax 141k
> I didn't do a good job with Trimmomatic for some reason so I have to do some trimming of my transcripts. If you had extraneous sequence…
Comment: How to convert plink files to Hapmap Format by bk11 ★ 2.3k
Please answer my above question. What type of data is it, binary (cases and controls) or quantitative? You need to update Phenotype info in…
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