updated 12 weeks ago by
Biostar
2.6k
•
written 7.4 years ago by
Istvan Albert
100k
795
votes
167
replies
141k
views
109 follow
122
votes
44
replies
11k
views
24 follow
updated 5 months ago by
Ram
43k
•
written 11.4 years ago by
Istvan Albert
100k
81
votes
39
replies
7.5k
views
11 follow
updated 14 months ago by
Ram
43k
•
written 11.3 years ago by
Istvan Albert
100k
59
votes
31
replies
4.9k
views
12 follow
updated 12 months ago by
Ram
43k
•
written 7.3 years ago by
David Langenberger
11k
57
votes
24
replies
6.5k
views
14 follow
updated 19 months ago by
Ram
43k
•
written 8.6 years ago by
Istvan Albert
100k
54
votes
24
replies
4.1k
views
12 follow
updated 12 months ago by
Ram
43k
•
written 8.1 years ago by
poisonAlien
★
3.2k
51
votes
17
replies
4.0k
views
updated 14 months ago by
Ram
43k
•
written 9.1 years ago by
Istvan Albert
100k
48
votes
13
replies
26k
views
10 follow
46
votes
16
replies
5.9k
views
12 follow
updated 11 months ago by
Ram
43k
•
written 6.4 years ago by
Hussain Ather
▴
990
45
votes
19
replies
6.5k
views
8 follow
updated 14 months ago by
Ram
43k
•
written 11.6 years ago by
Giovanni M Dall'Olio
28k
38
votes
8
replies
1.6k
views
6 follow
updated 10 months ago by
Alex Reynolds
35k
•
written 10 months ago by
David Langenberger
11k
38
votes
7
replies
2.2k
views
33
votes
5
replies
3.7k
views
updated 12 months ago by
Ram
43k
•
written 7.9 years ago by
Adele Feuerstein
▴
460
33
votes
4
replies
6.8k
views
32
votes
6
replies
13k
views
7 follow
updated 13 months ago by
Ram
43k
•
written 10.2 years ago by
Pierre Lindenbaum
161k
27
votes
9
replies
4.1k
views
27
votes
7
replies
3.6k
views
updated 14 months ago by
Ram
43k
•
written 11.2 years ago by
Istvan Albert
100k
25
votes
7
replies
6.3k
views
updated 13 months ago by
Ram
43k
•
written 10.5 years ago by
Pierre Lindenbaum
161k
25
votes
7
replies
2.8k
views
6 follow
updated 21 months ago by
Ram
43k
•
written 9.0 years ago by
Pierre Lindenbaum
161k
24
votes
21
replies
7.5k
views
9 follow
24
votes
7
replies
4.4k
views
updated 13 months ago by
Ram
43k
•
written 10.8 years ago by
Pierre Lindenbaum
161k
23
votes
7
replies
4.6k
views
updated 13 months ago by
Ram
43k
•
written 9.9 years ago by
Pierre Lindenbaum
161k
22
votes
3
replies
3.0k
views
updated 13 months ago by
Ram
43k
•
written 10.9 years ago by
Istvan Albert
100k
22
votes
10
replies
5.5k
views
22
votes
9
replies
6.7k
views
updated 15 months ago by
Ram
43k
•
written 8.9 years ago by
David Langenberger
11k
21
votes
7
replies
7.7k
views
updated 14 months ago by
Ram
43k
•
written 11.4 years ago by
bodhisattvax
▴
250
21
votes
16
replies
6.2k
views
6 follow
updated 2.1 years ago by
Ram
43k
•
written 9.3 years ago by
ugly.betty77
★
1.1k
21
votes
11
replies
9.4k
views
6 follow
20
votes
3
replies
2.7k
views
19
votes
4
replies
2.5k
views
updated 12 months ago by
Ram
43k
•
written 7.5 years ago by
David Langenberger
11k
19
votes
11
replies
6.9k
views
updated 14 months ago by
Ram
43k
•
written 11.6 years ago by
Istvan Albert
100k
18
votes
11
replies
4.0k
views
18
votes
3
replies
2.5k
views
updated 21 months ago by
Ram
43k
•
written 7.1 years ago by
David Langenberger
11k
17
votes
6
replies
9.0k
views
updated 13 months ago by
Ram
43k
•
written 10.1 years ago by
David Langenberger
11k
17
votes
9
replies
3.8k
views
updated 13 months ago by
Ram
43k
•
written 10.6 years ago by
Pierre Lindenbaum
161k
17
votes
7
replies
9.0k
views
updated 2.1 years ago by
Ram
43k
•
written 9.4 years ago by
David Langenberger
11k
16
votes
1
reply
5.0k
views
updated 12 months ago by
Ram
43k
•
written 8.3 years ago by
Devon Ryan
104k
15
votes
2
replies
11k
views
15
votes
18
replies
8.1k
views
6 follow
15
votes
4
replies
4.7k
views
15
votes
4
replies
2.6k
views
updated 14 months ago by
Ram
43k
•
written 11.2 years ago by
Pierre Lindenbaum
161k
15
votes
3
replies
6.9k
views
updated 13 months ago by
Ram
43k
•
written 10.4 years ago by
ugly.betty77
★
1.1k
14
votes
6
replies
7.0k
views
updated 16 months ago by
Ram
43k
•
written 8.8 years ago by
David Langenberger
11k
14
votes
1
reply
2.4k
views
updated 12 months ago by
Ram
43k
•
written 7.3 years ago by
Christophe Dessimoz
▴
740
14
votes
5
replies
3.4k
views
14
votes
2
replies
5.5k
views
14
votes
11
replies
2.9k
views
6 follow
updated 11 months ago by
Ram
43k
•
written 6.3 years ago by
anicet.ebou
▴
170
14
votes
3
replies
3.7k
views
updated 11 months ago by
Ram
43k
•
written 5.9 years ago by
lakhujanivijay
5.8k
14
votes
4
replies
3.4k
views
updated 21 months ago by
Ram
43k
•
written 8.2 years ago by
David Langenberger
11k
13
votes
2
replies
3.1k
views
updated 14 months ago by
Ram
43k
•
written 11.6 years ago by
Istvan Albert
100k
Recent Votes
Recent Locations •
All
United States, 2 minutes ago
United States, 3 minutes ago
Russia, 3 minutes ago
Colombia/Bogotá, 3 minutes ago
United States, 7 minutes ago
United States, 8 minutes ago
Palau, 8 minutes ago
Recent Awards •
All
Commentator to
GenoMax
141k
Centurion to
jkbonfield
★
1.2k
Popular Question to
yueli7
▴
250
Popular Question to
Randy H
▴
110
Popular Question to
ManuelDB
▴
80
Popular Question to
lefthandgergo
▴
10
Recent Replies
Comment: Downloaded pdb's on rcsb.org
by
GenoMax
141k
This may be the best option.
Get the PDB ID's
$ ./get.sh "Mus musculus" AHR
4M4X
5NJ8
5V0L
8H77
Then use `curl` to g…
Comment: Downloaded pdb's on rcsb.org
by
Ram
43k
It gives you the first 25 results though. I'll see if I can change that. EDIT: I've updated that number to 250. I'm hoping you won't need m…
Comment: Downloaded pdb's on rcsb.org
by
Ram
43k
I'm going to build off of OP's query and give them a simple script:
```bash
organism=$(echo $1 | sed 's/ /%20/g')
gene=$2
curl -s https:/…
Comment: miRNAs quantification using mirdeep2 tool
by
GenoMax
141k
This question does not make complete sense. If you have your own data files why do you need deep sequencing reads?
Genome (can be download…
Comment: Downloaded pdb's on rcsb.org
by
GenoMax
141k
For a non-programmer using the search builder link included above may be the best option. Even that is not very user friendly.
Comment: Downloaded pdb's on rcsb.org
by
Ram
43k
That's how they seem to have written their query - automating that is a bit of a pain though as it takes a crazy JSON as input.
Comment: Downloaded pdb's on rcsb.org
by
GenoMax
141k
You can use the "Advanced query" builder (https://www.rcsb.org/search/advanced ) to create a query like:
https://www.rcsb.org/search?requ…
Comment: Downloaded pdb's on rcsb.org
by
Ram
43k
PDB has a search API: https://search.rcsb.org/#search-example-1
Here's the JSON from your search query:
```
{
"query": {
"type": "grou…
Comment: Downloaded pdb's on rcsb.org
by
iamsmor
•
0
Thank you very much. Actually I looked at there, but actually I want to find something like according to search url like this [QUERY: Gene …
Comment: DEG analysis of RNA-seq data across multiple tissues and two conditions
by
BioinfGuru
★
1.7k
great guidance ... thank you
Comment: error in CPC2
by
Ram
43k
Ashok, what is CPC2? Please edit your post and add as much context as you can.
Comment: python file for cpc2
by
Ram
43k
Ashok - someone else had to (guess and) add context to your post. Please give us as much information as you can in the first place - we can…
Comment: python file for cpc2
by
Pierre Lindenbaum
161k
https://academic.oup.com/nar/article/45/W1/W12/3831091
> CPC2: a fast and accurate coding potential calculator based on sequence intrinsic…
Traffic: 2439 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6