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26 results • Page
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4
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252
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News:
Standalone NCBI ClusteredNR database now available for download
ClusteredNR
NCBI
standalone
BLAST
19 days ago by
PeterC_NCBI
▴ 330
3
votes
5
replies
855
views
News:
Ensembl Release 104 and newer GTF files no longer have genes sorted by position
Ensembl
GTF
updated 12 days ago by
alejandrogzi
▴ 30 • written 10 months ago by
dlaehnemann
▴ 30
2
votes
1
reply
206
views
News:
Successful NCBI NIAID Codeathon on VCF Files in SARS-CoV-2 Genomics
NCBI
Codeathon
updated 22 hours ago by
chrchang523
10k • written 3 days ago by
PeterC_NCBI
▴ 330
1
vote
0
replies
160
views
News:
Online Training - Bioinformatics Pipeline Development with Nextflow (November 15-17, 2023)
nextflow
automation
pipeline
development
3 days ago by
David Langenberger
10k
0
votes
0
replies
131
views
News:
Course: Data Manipulation and Visualisation with Python
Python
Data-Visualization
Data-Manipulation
updated 6 days ago by
Ram
40k • written 6 days ago by
carlopecoraro2
★ 2.3k
0
votes
0
replies
108
views
News:
Workshop on Virtual Screening on Drug Discovery from scratch (15-16 September, 2023 : 07.00 - 09.00 PM IST)
bioinformatics
screening
virtual
updated 13 days ago by
GenoMax
134k • written 13 days ago by
sriv.reetesh
• 0
0
votes
0
replies
139
views
News:
Introduction to Deep Learning for Biologists course
Python
Deep-Learning
Machine-Learning
updated 20 days ago by
Ram
40k • written 20 days ago by
carlopecoraro2
★ 2.3k
0
votes
0
replies
130
views
News:
Course on Phylogenomics
Phylogenetic-Inference
Divergence-Time-Estimation
Genomics
Phylogenomics
updated 24 days ago by
Ram
40k • written 25 days ago by
carlopecoraro2
★ 2.3k
0
votes
0
replies
136
views
News:
Course - GLMMs in R
GLMM
Mixed-Models
updated 6 days ago by
Ram
40k • written 7 days ago by
carlopecoraro2
★ 2.3k
0
votes
1
reply
189
views
News:
LAST CALL: Online Course - A Practical Introduction to NGS Data Analysis - October 23-25, 2023
DNA-seq
Workshop
RNA-seq
6 hours ago by
David Langenberger
10k
0
votes
2
replies
562
views
News:
The Practice of RADseq: Population Genomics Analysis with Stacks (RADS02) Early bird deadline approaching - 20th September
population-genomics
radseq
stacks
updated 6 days ago by
Dave Carlson
★ 1.4k • written 6 days ago by
oliverhooker
▴ 110
0
votes
0
replies
135
views
News:
Introduction to Nextflow (2 seats left)
Nextflow
Workflow
Reproducibility
updated 6 days ago by
Ram
40k • written 7 days ago by
carlopecoraro2
★ 2.3k
0
votes
0
replies
143
views
News:
Course - RNAseq in non-model organisms
R
RNAseq
DifferentialExpressionAnalysis
Bioconductor
15 days ago by
carlopecoraro2
★ 2.3k
0
votes
0
replies
125
views
News:
Course - Reproducibility Data Analysis with R
R
renv
VersionControl
Reproducibility
20 days ago by
carlopecoraro2
★ 2.3k
0
votes
0
replies
194
views
News:
Online course: Easily analyze single cell RNA-seq data with Cellenics®, a user-friendly web-based platform
scRNA-seq
training
single-cell-RNA-seq
updated 24 days ago by
Ram
40k • written 24 days ago by
Sara
• 0
0
votes
0
replies
116
views
News:
RNAseq data analysis with R/Bioconductor
R
RNAseq
Bioconductor
13 days ago by
carlopecoraro2
★ 2.3k
0
votes
0
replies
129
views
News:
NCBI ClinVar XML update to accomodate somatic variants
SNP
NCBI
XML
ClinVar
12 days ago by
PeterC_NCBI
▴ 330
0
votes
0
replies
120
views
News:
course - Population Genomics Using Ancient DNA Data
Bioinformatics
PopulationGenomics
Genomics
aDNA
8 days ago by
carlopecoraro2
★ 2.3k
0
votes
0
replies
163
views
News:
Course. -Multivariate Data Analysis with R and vegan
R
vegan
MultivariateDataAnalysis
29 days ago by
carlopecoraro2
★ 2.3k
0
votes
0
replies
156
views
News:
Workshop - Single-Cell RNA-Seq Data Analysis: A Practical Introduction (November 8-10, 2023 in Berlin)
workshop
scRNA-Seq
RNA-Seq
single-cell
updated 4 days ago by
Ram
40k • written 4 days ago by
David Langenberger
10k
0
votes
0
replies
135
views
News:
Genomic Prediction course
Bioinformatics
GWAS
GenomicPrediction
8 days ago by
carlopecoraro2
★ 2.3k
0
votes
0
replies
78
views
News:
RADseq data analysis course
RADseq
Phylogenomics
Bioinformatics
Populationgenomics
Stacks
1 day ago by
carlopecoraro2
★ 2.3k
0
votes
0
replies
247
views
News:
Join Our Online Course: Incorporating Paleogenomes into Evolutionary Genomics Studies
Paleogenomics
Genomics
aDNA
Adaptation-Genomics
updated 25 days ago by
Ram
40k • written 25 days ago by
carlopecoraro2
★ 2.3k
0
votes
0
replies
128
views
News:
Virtual Variant Detection Workshop: September 11-14, 2023
tutorial
detection
genomics
workshop
variant
20 days ago by
mia.nahom
▴ 10
0
votes
0
replies
151
views
News:
Research Breakthrough in Identifying Viral Escape Mutations for Improved Therapeutic Design
sequence-analysis
sars-cov-2
spike-protein
updated 4 days ago by
Ram
40k • written 4 days ago by
Prem
• 0
0
votes
1
reply
173
views
News:
EMBL-EBI virtual course | Introduction to RNA-seq and functional interpretation
RNA-seq
updated 3 days ago by
Ram
40k • written 3 days ago by
Rebecca
• 0
26 results • Page
1 of 1
Recent Votes
Comment: Low Alignment rate
Answer: Filter transcription factors
Answer: Filter transcription factors
Answer: Filter transcription factors
Comment: Integrated Seurat object change name of the two conditions
Comment: Integrated Seurat object change name of the two conditions
Concatenating fastq.gz files across lanes
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Recent Replies
Comment: Should I Learn Docker to Run Command Line Bioinformatics Tool?
by
ATpoint
76k
Never tried, so idk. Why wouldn't it support it?
Comment: Should I Learn Docker to Run Command Line Bioinformatics Tool?
by
ATpoint
76k
I never tried conda images but since `mamba > conda` I guess mambaforge is better.
Comment: Filter human transcription factors
by
Chris
▴ 180
Thank you so much!
Comment: Filter human transcription factors
by
Chris
▴ 180
Yes, I do GO and GSEA to get pathway. I download the background gene at https://www.gsea-msigdb.org/gsea/msigdb/human/collections.jsp#C3 Th…
Answer: Visualize where kmers are on a reference genome
by
Alex Reynolds
35k
Make a bigBed file: https://www.biostars.org/p/9546293/ Then view it on the UCSC Genome Browser: http://genome.ucsc.edu/goldenPath/help/…
Comment: Integrated Seurat object change name of the two conditions
by
camillab.
▴ 130
great! thank you very much!
Answer: Filter transcription factors
by
jared.andrews07
★ 15k
[This database](http://humantfs.ccbr.utoronto.ca/download.php) has been the best I've found.
Comment: Filter transcription factors
by
Ram
40k
What have you tried? Have you looked at GO annotations?
Comment: how to identify uniq genes between two gff files.
by
nikhil
▴ 10
yes @juke34 , I tried agat_sp_compare_two_annotations.pl for both gff files and got comparative output in table format. Thank you very muc…
Comment: Integrated Seurat object change name of the two conditions
by
Amitm
★ 2.2k
Yes, its similar structure. This snippet should add a new metadata column "sample.New" with what you want to do # Assuming a seurat obj. c…
Comment: Low Alignment rate
by
biofalconch
▴ 970
Yeap, you can sample your reads with `seqtk` like this: seqtk sample -s100 read2.fq 100 > Sample.fq Take a couple and run them throug…
Answer: obtaining circular RNAs' sequences from circBase
by
Barry Digby
★ 1.2k
You won't find them on circBase. circAtlas has the mature spliced sequence available. You can [search for circRNAs](https://ngdc.cncb.a…
Comment: Should I Learn Docker to Run Command Line Bioinformatics Tool?
by
Ram
40k
\#TIL mambaforge - better than continuum's conda images I'm guessing?
Comment: Should I Learn Docker to Run Command Line Bioinformatics Tool?
by
arriyaz.nstu
▴ 30
If the laptop doesn't support WSL2, then will the Docker (with linux) work?
Comment: Integrated Seurat object change name of the two conditions
by
camillab.
▴ 130
thanks but my metadata looks different from yours. Will it work even there are not the same "structure"? or…
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