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News: Course - Network Analysis in Systems Biology with R/Bioconductor
R Systems-Biology Network-Analysis Bioconductor
updated 7 weeks ago by 40k • written 3 months ago by ★ 2.3k
0
votes
0
replies
201
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News: course on Reproducibility data analysis with R
R Reproducibility Git Github
3 months ago by carlopecoraro2 ★ 2.3k
38
votes
8
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1.1k
views
6 follow
News: What happens when a bioinformatician has his own genome sequenced for $300?
DNAseq DNA WGS
updated 3 months ago by 35k • written 3 months ago by 10k
4
votes
0
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370
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News: A Practical Introduction to Single-Cell RNA-Seq Data Analysis (November 8-10, 2023 in Berlin, Germany)
NGS RNA-Seq single-cell workshop
3 months ago by David Langenberger 10k
0
votes
0
replies
387
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News: Hands-On NGS Data Analysis Courses 2023
RNA-seq DNA-seq Workshop
updated 3 months ago by 40k • written 3 months ago by 10k
1
vote
0
replies
260
views
News: Course - Introduction to Deep Learning for biologists
Genomics Deep-Learning Python NGS
updated 3 months ago by 40k • written 3 months ago by ★ 2.3k
1
vote
0
replies
287
views
News: Good bioinformatics training resources
NGS
updated 3 months ago by 157k • written 3 months ago by ▴ 70
0
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0
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317
views
News: Generalized Linear Models (GLM) course in R
R GLM statistics
3 months ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
313
views
News: course - Advanced Python programming
Python Deep-Learning Machine-Learning
updated 7 weeks ago by 40k • written 4 months ago by ★ 2.3k
3
votes
2
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483
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News: Participate in a NCBI/NIAID Virtual Codeathon: VCF Files for Population Genomics, Jul 31 - Aug 4, 2023
VCF SARS-CoV-2 NCBI Codeathon
4 months ago by PeterC_NCBI ▴ 330
0
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0
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216
views
News: Virtual Genome Annotation Workshop
annotation genome workshop
4 months ago by mia.nahom ▴ 10
0
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0
replies
419
views
News: Course - Longitudinal data analysis in R
Longitudinal-Data R Genomics
updated 4 months ago by 40k • written 4 months ago by ★ 2.3k
0
votes
0
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252
views
News: New version of ElasticBLAST (1.1.0) available from NCBI
ElasticBLAST BLAST. NCBI
4 months ago by PeterC_NCBI ▴ 330
0
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0
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226
views
News: Course - Introduction to CRISPR for Ecology and Evolution Studies
Genomics CRISPR
4 months ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
811
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News: GWAS course
GWAS R
updated 4 months ago by 40k • written 4 months ago by ★ 2.3k
0
votes
0
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315
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News: Course - RNAseq data analysis with R/Bioconductor
R Tidyverse RNA-seq Bioconductor
updated 7 weeks ago by 40k • written 4 months ago by ★ 2.3k
0
votes
0
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294
views
News: Course - Multiplex imagine analysis/ Spatial Omics
Multiplex-Image-Analysis Spatial-Omics
updated 4 months ago by 40k • written 4 months ago by ★ 2.3k
3
votes
3
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826
views
News: NCBI's IgBLAST version 1.21.0 is now available
IgBLAST BLAST T-Cell NCBI receptors
4 months ago by PeterC_NCBI ▴ 330
0
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0
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211
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News: course- Population genomic inference from low-coverage whole-genome sequencing data
Whole-Genome-Sequencing Population-Genomics
updated 4 months ago by 40k • written 4 months ago by ★ 2.3k
0
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0
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239
views
News: PROGRAMMING IN R : MOVING FROM BEGINNER TO ADVANCED
Programming Training R
4 months ago by carlopecoraro2 ★ 2.3k
1
vote
0
replies
545
views
News: NCBI BLAST+ 2.14.0 release includes faster protein and translation search options
NCBI BLAST
4 months ago by PeterC_NCBI ▴ 330
0
votes
0
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305
views
News: Get Your Science going in 10 Minutes with the Biostar Handbook!
education biostarhandbook
updated 4 months ago by 40k • written 4 months ago by 98k
0
votes
0
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257
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News: Course - Network Analysis in Systems Biology with R/Bioconductor
R Network-Analysis Bioconductor Systems-Biology
updated 4 months ago by 40k • written 5 months ago by ★ 2.3k
0
votes
0
replies
280
views
News: Course - Phylogenetic Comparative Methods in R
Comparative-Methods R Phylogenetics
updated 4 months ago by 40k • written 5 months ago by ★ 2.3k
0
votes
2
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915
views
News: 20% Off - Next-Generation Sequencing Data Analysis: A Practical Introduction (May 3-5, 2023 in Munich, Germany)
NGS DNA-Seq variant-calling RNA-Seq workshop
5 months ago by David Langenberger 10k
1
vote
0
replies
306
views
News: Course - Statistics for biologists with R
Statistics R
5 months ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
342
views
News: GWAS course in June
GWAS
updated 4 months ago by 40k • written 5 months ago by ★ 2.3k
1
vote
1
reply
464
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News: 20% Off - Bioinformatics Pipeline Development with Nextflow (May 15-17 in Leipzig, Germany)
NGS nextflow RNAseq pipelines DNAseq
5 months ago by David Langenberger 10k
0
votes
0
replies
316
views
News: Single-cell RNAseq with R/Bioconductor course
scRNAseq Bioconductor R
updated 4 months ago by 40k • written 5 months ago by ★ 2.3k
0
votes
0
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236
views
News: Environmental Metagenomics - 17-21 April
MAGs Metagenomics
updated 5 months ago by 40k • written 5 months ago by ★ 2.3k
1
vote
0
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305
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News: Announcing the 3rd round of the Nextflow and nf-core mentorship
nf-core mentorship nf_core nextflow
updated 5 months ago by 40k • written 5 months ago by ▴ 440
1
vote
0
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314
views
News: New open access publication on ElasticBLAST in BMC Bioinformatics
NCBI ElasticBLAST BLAST
5 months ago by PeterC_NCBI ▴ 330
0
votes
0
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318
views
News: Pangenomics course in April!
Pangenomics Prokaryotic-Genomics
5 months ago by carlopecoraro2 ★ 2.3k
1
vote
0
replies
389
views
News: Talk from Aaron Lun on Orchestrating Single-Cell Analysis With Bioconductor
scrna-seq
updated 5 months ago by 40k • written 5 months ago by 76k
0
votes
0
replies
313
views
News: Cellosaurus release 45 is available
knowledgebase cell-line
updated 3 months ago by 40k • written 6 months ago by ▴ 110
0
votes
0
replies
262
views
News: Virtual RAD-seq Analysis Workshop!
workshops popgen genomics rad-seq
6 months ago by mia.nahom ▴ 10
0
votes
0
replies
556
views
News: The Canadian Bioinformatics Workshops are back for summer 2023
CBW training workshop
6 months ago by bioinformatics.ca • 0
0
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0
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298
views
News: ISMB-affiliated virtual tutorial on Neo4j/Cypher for life sciences
neo4j cypher graph knowledge
6 months ago by Stephen • 0
0
votes
0
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337
views
News: Announcing workshop on Declarative Programming in Biology and Medicine (Seattle, Sept. 2023)
medicine declmed declarative icfp precision
5 months ago by Stephen • 0
0
votes
0
replies
287
views
News: Course live online Introduction to Bayesian Analyses using R, May 8th-12th, 2023
bayesian RProject course online
6 months ago by Sole • 0
0
votes
0
replies
299
views
News: course - Reproducibility in Bioinformatics
Docker Reproducibility
updated 6 months ago by 40k • written 6 months ago by ★ 2.3k
0
votes
2
replies
652
views
News: Course - Metagenomics, metatranscriptomics, and multi'omics for microbial community Studies
Metagenomics Metatranscriptomics Multiomics
updated 6 months ago by 40k • written 6 months ago by ★ 2.3k
10
votes
4
replies
979
views
News: RNA-Seq Data Analysis Workshop - Join us in Berlin, Germany from March 27-30, 2023!
NGS transcriptomics workshop
updated 6 months ago by ▴ 30 • written 7 months ago by 10k
1
vote
0
replies
751
views
News: Summer School in Bioinformatics
Genomics Docker RNA-seq
updated 6 months ago by 40k • written 6 months ago by ★ 2.3k
1
vote
1
reply
502
views
News: Sign-ups for the St. Jude KIDS23 BioHackathon (May 3-5th) open through March 15th!
stjude hackathon
6 months ago by jared.andrews07 ★ 15k
1
vote
0
replies
321
views
News: Course - BIOINFORMATIC ANALYSIS OF TRANSPOSABLE ELEMENTS
Transposable-Elements TE Genome-Assembly
updated 6 months ago by 40k • written 6 months ago by ★ 2.3k
0
votes
0
replies
298
views
News: Environmental Metagenomics course
Environmental-Metagenomics
updated 6 months ago by 40k • written 6 months ago by ★ 2.3k
0
votes
0
replies
293
views
News: Course - GENERALIZED LINEAR MODELS in R
GLM R Generalised-Linear-Model
updated 4 months ago by 40k • written 6 months ago by ★ 2.3k
1
vote
0
replies
347
views
News: Virtual Single Cell RNA-seq Workshop
single genomics cell expression rna-seq workshop gene
6 months ago by mia.nahom ▴ 10
1
vote
0
replies
335
views
News: Advanced Bayesian statistics in R course
Statistics RegressionModeling Bayesian R
6 months ago by carlopecoraro2 ★ 2.3k
1,000 results • Page 2 of 20
Recent Votes
Answer: Filter transcription factors
Comment: Calculation of TMB on gene level
Comment: Should I Learn Docker to Run Command Line Bioinformatics Tool?
Comment: ATAC-seq troubleshoot - Just Noise
t2t human reference genome for RNA-seq
Answer: Samtools Failing to Install through Conda
Answer: Importance of Data Structures for Bioinformatics?
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Recent Replies
Answer: Saving the output of LD pruning from SNPRelate package as a new GDS file by Patrick • 0
Thank you James for the response; My problem is only if I want to use the output of LD pruning in a different software, like STRUCTURE (to …
Answer: Average Coverage after Assembly (Spades) by taniapsduarte • 0
Hi, I'm running into the same issue. Did you make it work? Or did you find an alternative method? Thanks!
Answer: Can vg take MUMmer output as input? by Qi • 0
get the sv from delta and u can set them as input of vg
Comment: Calculation of TMB on gene level by svp ▴ 580
TMB calculated by the number of non-synonymous somatic mutations per mega-base in coding regions. Performing TMB at gene level is technical…
Comment: ATAC-seq troubleshoot - Just Noise by vk ▴ 40
Do you think there's a possibility that something may have gone wrong in the sequencing step, as the bio-analyzer run seems to look okay or…
Answer: Samtools Failing to Install through Conda by hukai916 ▴ 10
Same issue on brand new M2 chip MacBook: conda seems NOT able to find `samtools`; `brew` worked.
Comment: Enrichment of mitochondrial and ribosomal pathways - an artifact? by LauferVA 3.7k
im unclear on why you would ask this question without providing more context about the cell states that are being explored by the experimen…
Comment: Should I Learn Docker to Run Command Line Bioinformatics Tool? by Ram 40k
Singularity is a good option but OP explicitly mentions that their users are using their own laptops. On laptops, it's a lot easier to use …
Comment: Calculation of TMB on gene level by Zhenyu Zhang ▴ 980
Is what you asked for just mutation frequency or mutation frequency adjusted by gene length?
Comment: Understanding TCGA barcodes with dot in the fieldname by Zhenyu Zhang ▴ 980
second this. The "95FC84F5-4FB3-4CE7-ACD0-C7E0D8F03DD7" is obviously an UUID, not related to TCGA barcode
Comment: Should I Learn Docker to Run Command Line Bioinformatics Tool? by Yogi ▴ 10
Just 1 thing to consider. `Docker` is great because it provides a way to containerize applications. HOWEVER, many people on computation…
Comment: Filter human transcription factors by Yogi ▴ 10
Definitely the best resource. Was also going to recommend this one.
Comment: GO analysis after DESeq2 by Ram 40k
The go category needs to be a [facet][1] on the ggplot. [1]: http://www.sthda.com/english/wiki/ggplot2-facet-split-a-plot-into-a-matrix-…
Comment: How to sort cd-hit-est cluster file by Mo ▴ 40
Hi, Thank you so much, this has worked :)
Comment: Program for Overlapping DMRs (Differentially Methylated Regions) Between Groups by LChart 3.3k
You might specify how the data is formatted. If you have `chr start end` columns, you can use `bedtools` to perform the interval operations.
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