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1,189 results • Page
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News:
Online Training - Nanopore direct RNA Sequencing
RNA-Seq
rna-seq
Nanopore
News
6 months ago by
carlopecoraro2
★ 2.0k
0
votes
0
replies
151
views
News:
rPHG v0.1.11 Updates
rphg
News
6 months ago by
Brandon M.
• 0
1
vote
0
replies
235
views
News:
Interested in Genome Assembly using long-reads?
assembly
Assembly
PacBio
Nanopore
News
6 months ago by
carlopecoraro2
★ 2.0k
1
vote
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219
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News:
Making molecular data FAIR for ML
fair
molecular data
ml
News
6 months ago by
Elucidata
▴ 240
4
votes
2
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3.0k
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News:
GeneSCF (Gene Enrichment Tool): Advice to users
genescf
kegg
GO
annotation
GeneSCF
News
6 months ago by
EagleEye
6.8k
0
votes
0
replies
226
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News:
Training - Genome Assembly with Pacbio and HIC data
assembly
Assembly
News
6 months ago by
carlopecoraro2
★ 2.0k
2
votes
0
replies
653
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News:
Primer-BLAST can now design primers for a group of related target sequences!
primer-blast
blast
News
6 months ago by
GenoMax
99k
3
votes
1
reply
211
views
News:
Ensembl Pre! site retirement - 31st January 2021
Ensembl
News
6 months ago by
Ben_Ensembl
★ 1.7k
0
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0
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235
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News:
Online training - NGS analysis for gene regulation and epigenomics
ChIP-Seq
Epigenomics
next-gen
genome
R
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6 months ago by
carlopecoraro2
★ 2.0k
0
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0
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275
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News:
Register now for online PacBio Iso-Seq workshop
iso-seq
pacbio
News
6 months ago by
najoshi
▴ 30
1
vote
0
replies
406
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News:
Release 1.11 of HTSlib, SAMtools and BCFtools
samtools
bcftools
htslib
News
6 months ago by
Pierre Lindenbaum
135k
0
votes
0
replies
535
views
News:
Online Course - A Practical Introduction to NGS Data Analysis (Dec 9 - 11, 2020) - 5 seats left
RNA-Seq
DNA-Seq
Workshop
News
6 months ago by
David Langenberger
9.6k
6
votes
1
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1.4k
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News:
The Art of Bioinformatics Scripting. A new book in the Biostar Handbook collection.
bioinformatics
education
News
updated 7 months ago by
ghazala.bif.2k18
• 0 • written 17 months ago by
Istvan Albert
87k
0
votes
0
replies
290
views
News:
DNA Methylation Data Analysis Workshop - 2-5 November 2020 in Berlin
NGS
bisulfite-seq
workshop
News
7 months ago by
David Langenberger
9.6k
0
votes
0
replies
200
views
News:
Online Training - Introduction to Python
Programming
Python
News
7 months ago by
carlopecoraro2
★ 2.0k
0
votes
0
replies
315
views
News:
[Webinar] Using t-SNE for data analysis : An Introduction by Dr. Laurens van der Maaten (Inventor of t-SNE, Research Director at Facebook AI Research)
webinar
scRNA-seq
t-SNE
News
7 months ago by
Jennifer Pham
▴ 420
3
votes
0
replies
383
views
News:
New web BLAST default parameters and search limits are now in place at NCBI
blast
www-blast
ncbi
News
7 months ago by
GenoMax
99k
0
votes
2
replies
373
views
News:
Training - Introduction to Deep Learning
DeepLearning
Python
MachineLearning
Programming
News
7 months ago by
carlopecoraro2
★ 2.0k
1
vote
0
replies
197
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News:
Training - Data visualization in R with ggplot2
R
Dataviz
ggplot2
News
7 months ago by
carlopecoraro2
★ 2.0k
0
votes
1
reply
233
views
News:
Research Training in Bioinformatics.
genome
News
7 months ago by
rasalsi2012
▴ 10
1
vote
0
replies
184
views
News:
Research Training in Next-Generation Sequencing Data Analysis.
ChIP-Seq
RNA-Seq
News
7 months ago by
rasalsi2012
▴ 10
1
vote
0
replies
300
views
News:
Pan-Structural Variation hackathon in the Cloud (Remote hackathon)
sequencing
structural varaints
News
7 months ago by
Medhat
8.9k
1
vote
0
replies
281
views
News:
Announcing the Genetic Engineering Attribution Challenge!
competition
data science
machine learning
news
News
8 months ago by
shellyholland8
▴ 10
0
votes
0
replies
335
views
News:
:: FINAL CALL :: Only 2 seats left - RNA-Seq Data Analysis Workshop for Beginners in Leipzig, Germany
RNA-Seq
NGS
transcriptomics
News
8 months ago by
David Langenberger
9.6k
0
votes
0
replies
226
views
News:
Software: BIRCH Bioinformatics System 3.70
sequence
alignment
genome
Assembly
RNA-Seq
News
8 months ago by
brian.fristensky
▴ 160
0
votes
0
replies
270
views
News:
Training - Introduction to Bioinformatics for beginners
assembly
sequencing
rna-seq
RNA-Seq
SNP
News
8 months ago by
carlopecoraro2
★ 2.0k
0
votes
0
replies
206
views
News:
Training in Computational Drug Design and Discovery @NIH
Biomedical
ComputationalBiology
DrugDesign
RNASeq
News
9 months ago by
AABI
▴ 120
0
votes
1
reply
254
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News:
Genetic Testing for Ovarian Cancer - A comprehensive genetic analysis approach for early detection
Breast Cancer Test
Gene Screening
Breast Cancer
News
9 months ago by
Genes2Me
• 0
0
votes
0
replies
213
views
News:
Upcoming online UC Davis Bioinformatics Core workshops
Assembly
RNA-Seq
single-cell
News
9 months ago by
najoshi
▴ 30
0
votes
0
replies
250
views
News:
Training - RADseq data analysis
RADseq
SNP
Stacks
News
9 months ago by
carlopecoraro2
★ 2.0k
0
votes
0
replies
283
views
News:
Training in Bioinformatics for Beginners @ NIH
Biomedical
NGS
BiomedicalInformatics
Training
News
9 months ago by
AABI
▴ 120
0
votes
0
replies
236
views
News:
Training in Creating Plots, Graphs and Maps using R @ NIH
Biomedical
Bioinformatics
RPlatform
RGraphs
NGS
News
9 months ago by
AABI
▴ 120
6
votes
7
replies
477
views
News:
NCBI wants to remove quality scores from SRA
SRA
quality scores
genome
Assembly
trimming
News
updated 9 months ago by
GenoMax
99k • written 9 months ago by
zhousun21
▴ 20
0
votes
0
replies
179
views
News:
Cellosaurus release 35 is available
knowledgebase
news
cell line
News
9 months ago by
Amos Bairoch
▴ 110
2
votes
2
replies
192
views
News:
Free online seminars/journal club
bioinformatics
seminars
journal clubs
Forum
News
9 months ago by
kuan-lin.huang
▴ 40
0
votes
0
replies
307
views
News:
NGS Data Analysis Trainings (Classroom and Online)
RNA-Seq
DNA-Seq
Training
News
9 months ago by
David Langenberger
9.6k
0
votes
0
replies
306
views
News:
Summer School in Bioinformatics (ONLINE, 7th-11th September 2020)
RNA-Seq
genome
Assembly
SNP
sequence
News
9 months ago by
carlopecoraro2
★ 2.0k
0
votes
0
replies
336
views
News:
ONLINE COURSE. Eukaryotic genome assembly USING Pacbio and Hi-C
assembly
pacbio
long-reads
HI-C
News
9 months ago by
carlopecoraro2
★ 2.0k
0
votes
0
replies
323
views
News:
A Practical Introduction to NGS Data Analysis - America Online Edition
DNA-Seq
workshop
NGS
News
10 months ago by
David Langenberger
9.6k
0
votes
0
replies
216
views
News:
Course on Deep Learning
DeepLearnig
Python
MachineLearning
News
10 months ago by
carlopecoraro2
★ 2.0k
2
votes
0
replies
238
views
News:
Webinar in next hour : Updated BLAST RefSeq rRNA databases for identification and phylogenetic analysis
blast
News
10 months ago by
GenoMax
99k
0
votes
0
replies
164
views
News:
Final Reminder for the precisionFDA Truth Challenge V2 Submissions
genome
News
10 months ago by
stephens_sarah
▴ 150
0
votes
0
replies
243
views
News:
Statistical Computing for Environmental Science with R and Rstudio
Course
online
Rproject
Rstudio
statistics
News
10 months ago by
Transmitting Science communication
• 0
0
votes
0
replies
256
views
News:
Introduction to Bayesian Inference in Practice
Bayesian
MCMC
Python
R
statistics
News
10 months ago by
Transmitting Science communication
• 0
1
vote
0
replies
239
views
News:
Utrecht Bioinformatics Center: online seminars
epigenomics
DNA damage
bioinformatics
Utrecht
News
10 months ago by
Sergio Martínez Cuesta
▴ 170
0
votes
0
replies
475
views
News:
ONLINE COURSE Introduction to R for ecologists and evolutionary biologists (IRFB04) This course will be delivered live
R
News
updated 10 months ago by
GenoMax
99k • written 10 months ago by
oliverhooker
▴ 90
1
vote
3
replies
416
views
News:
4th Berlin Summer School in NGS Data Analysis - October 5-9, 2020
NGS
RNA-Seq
DNA-Seq
News
10 months ago by
David Langenberger
9.6k
0
votes
0
replies
203
views
News:
Extension Announcement for the precisionFDA Truth Challenge V2
genome
News
10 months ago by
stephens_sarah
▴ 150
2
votes
0
replies
219
views
News:
Introduction to NGS data analysis - ONLINE 7th-11th September 2020
RNA-Seq
Assembly
next-gen
assembly
sequencing
News
10 months ago by
carlopecoraro2
★ 2.0k
0
votes
0
replies
267
views
News:
Last chance to register for online RNA-Seq Workshop June 1-4
RNA-Seq
News
10 months ago by
najoshi
▴ 30
1,189 results • Page
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Recent Votes
Is the union of cDNA sequences the exome?
Answer: Filter contig fasta file by GC content
Comment: R command worked yesterday, but stalls today?
Answer: R command worked yesterday, but stalls today?
Comment: How to combine 2 incomplete GTF
Answer: comprehensive bacterial phylogenetic tree with edge lengths for all of RefSeq or
Comment: How can I Extract Transposable element from a new genome assembly?
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Recent Replies
Comment: How to run SPAdes assembler with bam files?
by
GenoMax
99k
You should be able to use pipes to string those steps together samtools view -f 12 -F 256 aligned-sorted-deduplicated.bam | samtools s…
Comment: snap installation error
by
Gianluca
• 0
I know this is an old thread but if anyone has the same problem I prefer to write it here because it is one of the first results in google.…
Comment: how to select peaks at not transcribed genes
by
Lila M
▴ 910
That is my concern... this is why I asked in here :)
Comment: how to select peaks at not transcribed genes
by
jared.andrews07
9.3k
In that case, wouldn't you consider all peaks to be associated with transcription? Even if your 232 peaks are not associated with genes, th…
Answer: Filter contig fasta file by GC content
by
GenoMax
99k
Try the following. seqkit fx2tab --name --only-id --gc contigs.fa | awk -F "\t" '{if ($2 < 35) print $1}' | xargs -n 1 sh -c 'seqki…
Comment: how to select peaks at not transcribed genes
by
Lila M
▴ 910
indeed, my IP was for Pol2
Comment: R command worked yesterday, but stalls today?
by
dariober
12k
...besides, [wget](https://www.gnu.org/software/wget/manual/wget.html) has a `-c/--continue` option to resume the download of a partial fil…
Comment: how to select peaks at not transcribed genes
by
jared.andrews07
9.3k
What makes you think genes with a peak are transcribed while those without are not? Unless your IP was for Pol2, this is an overly simplist…
Comment: How to combine 2 incomplete GTF
by
rafaelsolersanblas
▴ 70
Thank you! I am going to try it :)
Comment: How to combine 2 incomplete GTF
by
GenoMax
99k
Please create a new environment when installing packages. That avoids conflicts. conda create -c bioconda -n agat agat conda acti…
Comment: How to combine 2 incomplete GTF
by
rafaelsolersanblas
▴ 70
Hi Juke, I am trying to install it and I can't. ![enter image description here][1] [1]: /media/images/bc08978b-10f7-4666-b385-57807b…
Comment: comprehensive bacterial phylogenetic tree with edge lengths for all of RefSeq or
by
cmo
▴ 70
I agree with you, Mensur, that the GTDB is arguably more reliable and comprehensive than NCBI. However, due to the relative greater longevi…
Comment: how to select peaks at not transcribed genes
by
Lila M
▴ 910
rigth, it is a ChIP seq analysis
Comment: how to select peaks at not transcribed genes
by
ATpoint
48k
Which type data are we talking about? What was the experiment? There are literally no details in this question right now. It the assay meas…
Comment: How to combine 2 incomplete GTF
by
rafaelsolersanblas
▴ 70
Thank yo so much Juke!
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