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News: Upcoming NGS Workshop: A Beginner's Guide to NGS Data Analysis
workshop Assembly transcriptomics RNA-Seq
updated 12 months ago by 38k • written 8.4 years ago by 9.9k
13
votes
7
replies
5.1k
views
News: Free HiSeq X Ten human genome fastq test data
HiSeq-X-Ten Human-genome Fastq next-gen
updated 15 months ago by 38k • written 8.7 years ago by ★ 1.8k
27
votes
7
replies
3.1k
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News: The Biostar Swarm: A Visualization
biostars
updated 6 weeks ago by 38k • written 10.1 years ago by 97k
6
votes
7
replies
1.5k
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News: NCBI wants to remove quality scores from SRA
SRA quality scores genome Assembly trimming News
updated 2.7 years ago by 127k • written 2.7 years ago by ▴ 40
24
votes
7
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4.1k
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News: #Bioinformatics Crowdcoding
crowd-coding
updated 4 weeks ago by 38k • written 9.7 years ago by 153k
8
votes
6
replies
1.1k
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News: Illumina to Acquire Pacific Biosciences
illumina pacbio News
4.4 years ago by Istvan Albert 97k
3
votes
6
replies
2.4k
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News: Brief Getting Started with Broad Firecloud tutorial posted
RNA-Seq News
6.8 years ago by Sean Davis 26k
9
votes
6
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1.8k
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News: No more hidden solutions in bioinformatics
precision-medicine genome-sequencing
updated 10 weeks ago by 38k • written 7.9 years ago by ★ 1.2k
1
vote
6
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690
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News: Course - FLOW CYTOMETRY ANALYSIS WITH R/BIOCONDUCTOR
Bioconductor FlowCytometry R
updated 11 weeks ago by ▴ 70 • written 3 months ago by ★ 2.3k
14
votes
6
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6.5k
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News: FINAL CALL: NGS Workshop - A Beginner's Guide to NGS Data Analysis (2 last seats)
NGS RNA-Seq workshop
updated 3 months ago by 38k • written 7.7 years ago by 9.9k
17
votes
6
replies
8.4k
views
News: Final registration deadline: September 15th - Bioinformatics Hands-On NGS Data Analysis Workshops 2014
methylation RNA-seq
updated 26 days ago by 38k • written 9.0 years ago by 9.9k
32
votes
6
replies
12k
views
7 follow
News: Ncbi Releases Entrez Direct, The Entrez Utilities On The Unix Command Line
ncbi genbank pubmed command-line entrez
updated 29 days ago by 38k • written 9.2 years ago by 153k
8
votes
6
replies
16k
views
News: Bioinformatics PhD Programs in the US
education PhD News
4.1 years ago by Ahmed Youssef ▴ 70
8
votes
6
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3.7k
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News: Last Call: Upcoming Workshop - Rna-Seq Bioinformatics: A Practical Introduction
RNA-seq
updated 5 weeks ago by 38k • written 10.2 years ago by 9.9k
2
votes
6
replies
2.3k
views
News: Master in integrated systems biology / Luxembourg
Master course bioinformatics systems biology News
5.7 years ago by Rainer ▴ 130
14
votes
5
replies
3.0k
views
News: Science Article On Social Influence Bias On Voting Patterns ("Herding") With Impact On Biostar.
meta biostars
updated 6 weeks ago by 38k • written 9.6 years ago by 52k
9
votes
5
replies
9.6k
views
8 follow
News: Online course: Learn Bioinformatics in 100 hours
biostars online-course
updated 6 weeks ago by 38k • written 5.6 years ago by 97k
1
vote
5
replies
675
views
News: Cancer Genomics course - 2 seats left
Genomics Cancer-Genomics R
updated 8 weeks ago by 38k • written 12 weeks ago by ★ 2.3k
0
votes
5
replies
1.3k
views
News: LAST CALL - 'Introduction to NGS Data Analysis' course in Berlin, October 8-10 2018
NGS training DNA-Seq RNA-Seq News
4.8 years ago by David Langenberger 9.9k
3
votes
5
replies
1.9k
views
News: Published: GeneSCF: a real-time based functional enrichment tool with support for multiple organisms
tool kegg geneontology cancer geneenrichment News
updated 6.5 years ago by ★ 1.8k • written 6.5 years ago by 7.4k
0
votes
5
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2.3k
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News: Workshop: Data manipulation and visualization with Python
next-gen sequence genome SNP News
6.4 years ago by carlopecoraro2 ★ 2.3k
9
votes
5
replies
3.3k
views
News: SAMTOOLS 1.4 released
samtools News
6.1 years ago by Pierre Lindenbaum 153k
4
votes
5
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2.4k
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News: Kover will provide support via Biostars
kover kmer machine learning news News
updated 6.2 years ago by ▴ 40 • written 6.8 years ago by ▴ 90
9
votes
5
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8.2k
views
News: A New Rest Based Api For Kegg: Kyoto Encyclopedia Of Genes And Genomes
kegg api
updated 5 weeks ago by 38k • written 10.4 years ago by ▴ 50
7
votes
5
replies
2.2k
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News: Physalia-Course: Introduction to Linux and workflows for biologists (Berlin)
Assembly next-gen alignment Unix News
6.0 years ago by carlopecoraro2 ★ 2.3k
9
votes
5
replies
2.7k
views
News: The NIH Software Discovery Index | We invite your comments
NIH software-catalog
updated 14 months ago by 38k • written 8.5 years ago by 26k
33
votes
5
replies
3.3k
views
News: FINAL CALL: Epigenetics Workshop - DNA Methylation Data Analysis (some last seats available)
Workshop Epigenetics Bisulfite Sequencing News
updated 6.4 years ago by 9.9k • written 6.9 years ago by ▴ 460
6
votes
5
replies
4.7k
views
News: NCBI MagicBlast ( Short read mapper )
ncbi blast hts mapper shortread News
6.6 years ago by Pierre Lindenbaum 153k
0
votes
5
replies
1.8k
views
News: Ashg 2012 Biostar Meetup
ASHG
updated 5 weeks ago by 38k • written 10.4 years ago by 12k
4
votes
4
replies
2.6k
views
News: Join The Dnanexus Developer Program
api cloud
updated 4 weeks ago by 38k • written 9.8 years ago by ▴ 30
14
votes
4
replies
3.0k
views
News: FULL: NGS Data Analysis Workshop for Beginners in Munich (29 June - 1 Juli 2016)
RNA-Seq next-gen NGS
updated 8 months ago by 38k • written 7.1 years ago by 9.9k
3
votes
4
replies
2.0k
views
News: Training in Metagenomics Data Analysis @NIH, USA, Nov 14 - 17, 2017
metagenomics training microbiome News
5.5 years ago by AABI ▴ 130
2
votes
4
replies
1.1k
views
News: Online training - Snakemake: Reproducible and Scalable Bioinformatic Workflows
Snakemake Pipeline
16 months ago by carlopecoraro2 ★ 2.3k
5
votes
4
replies
1.6k
views
News: 2nd International Conference on Pediatric Oncology and Pediatric Medicine
gene News
updated 6.1 years ago by 127k • written 6.1 years ago by • 0
15
votes
4
replies
2.3k
views
News: Call For Nominations: 2013 Benjamin Franklin Award
benjamin-franklin-award award
updated 5 weeks ago by 38k • written 10.1 years ago by 153k
8
votes
4
replies
1.6k
views
News: supporting vg users on biostars
vg graph vgteam genome News variation
updated 3 months ago by 4.6k • written 3.5 years ago by ★ 2.3k
0
votes
4
replies
790
views
News: Pan-Structural Variation hackathon in the Cloud!
sequencing SV Forum News
3.1 years ago by Medhat 9.5k
10
votes
4
replies
1.4k
views
News: 3rd Berlin Summer School in NGS Data Analysis (2 seats just became available)
NGS RNA-Seq DNA-Seq News
4.2 years ago by David Langenberger 9.9k
9
votes
4
replies
1.3k
views
News: Human Cell Atlas Data Coordination Platform Data Release Questionaire
RNA-Seq News
5.1 years ago by Laura ★ 1.8k
6
votes
4
replies
1.4k
views
News: Genomic variation course at the EBI - Updated
variation 1000 Genomes Ensembl snps News
6.9 years ago by Emily 23k
19
votes
4
replies
2.0k
views
News: How to analyze NGS data: An overview of nine different IT solutions
NGS RNA-Seq DNA-Seq News
updated 6.4 years ago by ▴ 970 • written 6.4 years ago by 9.9k
0
votes
4
replies
469
views
News: Ensembl Release 104 and newer GTF files no longer have genes sorted by position
Ensembl GTF
updated 3 months ago by ★ 2.2k • written 4 months ago by ▴ 10
4
votes
4
replies
1.4k
views
News: VCFclin working group
vcfclin
updated 26 days ago by 38k • written 8.9 years ago by ▴ 30
4
votes
4
replies
1.5k
views
News: 12th International Conference on Advancements in Bioinformatics and Drug Discovery
genome bioinformatics Computational Biology News
updated 4.5 years ago by ★ 1.9k • written 4.9 years ago by ▴ 20
31
votes
4
replies
6.1k
views
News: Rosalind: A Novel Bioinformatics Education Platform
education
updated 5 weeks ago by 38k • written 10.5 years ago by ▴ 310
10
votes
4
replies
604
views
News: RNA-Seq Data Analysis Workshop - Join us in Berlin, Germany from March 27-30, 2023!
NGS transcriptomics workshop
updated 16 days ago by ▴ 30 • written 7 weeks ago by 9.9k
6
votes
4
replies
819
views
News: Upcoming online training courses
Python R
19 months ago by carlopecoraro2 ★ 2.3k
2
votes
4
replies
1.7k
views
News: Reminder: Igb Tutorial Starts In 30 Minutes
visualization genome-browser RNA-seq
updated 4 weeks ago by 38k • written 9.5 years ago by ★ 2.3k
1
vote
4
replies
1.8k
views
News: webserver of TCGA data www.tcgaportal.org
RNA-Seq gene rna-seq genome News
4.8 years ago by xushutan ▴ 40
1
vote
4
replies
1.5k
views
News: Bioconductor Development Visualization
bioconductor
updated 8 months ago by 38k • written 7.9 years ago by 26k
1,000 results • Page 2 of 20
Recent Votes
Answer: how can i filter a sam file from a paf file
Answer: Align miRNA library (small RNA-seq) without trimming
Answer: Snakemake workflow for trimmomatic
C: Adjust for covariates
Comment: syntax errors when running part3 all-against-all
Picard LiftOver rejecting all Variants
Comment: pyCirclize - Circular visualization in Python
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Recent Replies
Comment: how can i filter a sam file from a paf file by colindaven 4.6k
Just save yourself a lot of pain and learn to filter the sam/bam file efficiently. It is much more of a widespread standard than PAF.
Comment: Snakemake workflow for trimmomatic by GenoMax 127k
Please accept this answer (green check mark) to provide closure to this thread.
Comment: syntax errors when running part3 all-against-all by Sofia • 0
When I started with the gz all-vs-all files for CHICK and ANOCA and started oma, everything ran fine, I got output. Then, in the same direc…
Comment: Quality control of Chip-seq data (NRF and PCB) by michelafrancesconi9 • 0
Can you explain me better? Because for the NRF I do : a) samtools view -c .bam b)samtools view -c -F 260 .bam then b/a and as a bam fi…
Comment: pyCirclize - Circular visualization in Python by karenkvn ▴ 40
Thank you for responding so quickly - this works perfectly!
Comment: pyCirclize - Circular visualization in Python by moshi ▴ 110
Please install Biopython with v1.80 or higher. If biopython>=1.80, there should be no errors.
Comment: Gene family classification using RNA-seq data by Dion • 0
well, I have been given the task to retrieve gene family/categorization. I found sveral papers on family classification, but no actual pack…
Comment: pyCirclize - Circular visualization in Python by karenkvn ▴ 40
Thank you for this wonderful programme! I am plotting a bacterial chromosome and find that when I plot the NC_000913 chromosome using the e…
Comment: SKAT in R by Eliza ▴ 20
@acvill can you sujjest maybe pther tools , methods for this ? ( also for every SNP i have data how many patients had the hetro/homozygous…
Comment: TCGA-BRCA tissue and RNAseq problem by pinheirofabiano ▴ 10
Go to https://portal.gdc.cancer.gov > Exploration > select TCGA and the cancer type you want > select case ID to download the files and hav…
Comment: Snakemake workflow for trimmomatic by antoine.fauchois92 • 0
Thank you very much for your reply ! It's working now !
Comment: Dependent p values by Eliza ▴ 20
@lchart I'm sorry for asking another of questions but I'm new to this field , can you please explain a little more how to use SKAT , saige…
Comment: How to deal with the probe id mapping to multiple gene ids? by dare_devil ★ 1.7k
similar question [here][1], [here][2] and [here][3] [1]: https://support.bioconductor.org/p/54838/ [2]: https://support.bioconductor.…
Comment: How to deal with the probe id mapping to multiple gene ids? by dare_devil ★ 1.7k
@genomax I have used the same platform file only. If you look at probe id and their corresponding `Gene Symbol` or `ENTREZ_GENE_ID` you can…
Comment: How to deal with the probe id mapping to multiple gene ids? by GenoMax 127k
Where are you seeing this? [Platform file for this array][1] on GEO has these names uniquely assigned. [1]: https://www.ncbi.nlm.nih.go…
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