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23
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7
replies
4.6k
views
News: Research accounts on GitHub
github git
updated 13 months ago by 43k • written 9.9 years ago by 161k
24
votes
7
replies
4.4k
views
News: #Bioinformatics Crowdcoding
crowd-coding
updated 13 months ago by 43k • written 10.8 years ago by 161k
3
votes
0
replies
4.4k
views
News: Free Online Harvardx Course, Data Analysis For Genomics, Starts April 7
methylation bioconductor ChIP-seq RNA-seq R
updated 13 months ago by 43k • written 10.0 years ago by ★ 2.2k
2
votes
0
replies
4.3k
views
News: Workshop: Analysis of single cell RNA-seq data
R next-gen RNA-Seq alignment
updated 11 months ago by 43k • written 6.8 years ago by ★ 2.5k
1
vote
0
replies
4.3k
views
News: Hands-On Training in RNA-seq Bioinformatics: A Practical Introduction - Mapping, Visualization, Basic Analyses
next-gen RNA-Seq workshop
updated 13 months ago by 43k • written 9.9 years ago by 11k
6
votes
4
replies
4.2k
views
News: awesome-single-cell: a list of open-source single-cell analysis software and workshop materials
single-cell RNA-Seq
updated 12 months ago by 43k • written 7.8 years ago by 26k
6
votes
9
replies
4.2k
views
News: 1000 Genomes : The Initial Phase 3 variant list and phased genotypes.
1000genomes
updated 13 months ago by 43k • written 9.8 years ago by 161k
6
votes
7
replies
4.2k
views
News: New in DiffBind: dba.plotProfile() - Peak profiles and profile heatmaps
DiffBind ChIP-seq deepTools visualization ATAC-seq
19 months ago by Rory Stark ★ 2.0k
11
votes
1
reply
4.2k
views
News: GATB will provide developer support via Biostar
minia dsk gatb
updated 2.2 years ago by 43k • written 9.9 years ago by ★ 1.5k
54
votes
24
replies
4.1k
views
12 follow
News: Big news from Microsoft. BASH on windows.
windows
updated 12 months ago by 43k • written 8.1 years ago by ★ 3.2k
7
votes
8
replies
4.1k
views
News: Next-Gen Sequencing Tutorials On Cubelp (Cranfield Bioinformatics Electronic Learning Platform)
genome chip-seq snp assembly
updated 18 months ago by 43k • written 10.7 years ago by ▴ 610
27
votes
9
replies
4.1k
views
News: OSX 10.11 released 30th Sep will be "rootless"
mac osx
updated 19 months ago by 43k • written 8.6 years ago by 13k
12
votes
17
replies
4.1k
views
6 follow
News: A programming language for living cells [Cello]
dna sequence research language
updated 12 months ago by 43k • written 8.0 years ago by 11k
8
votes
10
replies
4.0k
views
News: New versions of Minia and DSK (2.0.x)
minia dsk assembly gatb
updated 2.0 years ago by 43k • written 9.2 years ago by ★ 1.5k
18
votes
11
replies
4.0k
views
News: Full Genome Sequencing Service 30x whole human genome sequencing for $3,490 (project cancelled)
genome next-gen-sequencing
updated 2.3 years ago by 43k • written 9.6 years ago by ▴ 100
8
votes
6
replies
4.0k
views
News: Last Call: Upcoming Workshop - Rna-Seq Bioinformatics: A Practical Introduction
RNA-seq
updated 14 months ago by 43k • written 11.2 years ago by 11k
1
vote
0
replies
4.0k
views
News: Workshop: Bioinformatics for Beginners, University of Maryland, College Park, USA
next-gen RNA-Seq workshop assembly
updated 14 months ago by 43k • written 9.0 years ago by ▴ 20
4
votes
0
replies
4.0k
views
News: RepurposeDB - A New Reference Database of Drug Repositioning
precision-medicine drug-repositioning
updated 11 months ago by 43k • written 7.1 years ago by 18k
51
votes
17
replies
4.0k
views
News: Biostars 3.0 is now under testing. It has groups, charms and other interesting features.
meta biostars
updated 14 months ago by 43k • written 9.1 years ago by 100k
3
votes
3
replies
3.9k
views
News: A Tale Of Next Generation Sequencing Platforms: Ion Torrent, Pacific Biosciences And Illumina Miseq
sequencing
updated 14 months ago by 43k • written 11.7 years ago by 100k
12
votes
7
replies
3.9k
views
News: Welcome Ensembl REST with more endpoints!
ensembl rest-api
updated 13 months ago by 43k • written 9.5 years ago by ★ 5.2k
7
votes
3
replies
3.9k
views
News: Visualizing genomic data: techniques and challenges. Our interview with Dr. Malachi Griffith, Dr. Obi Griffith and Mr. Zachary Skidmore (The Griffith…
R RNA-Seq genome NGSdata
updated 11 months ago by 43k • written 6.8 years ago by ★ 2.5k
17
votes
9
replies
3.8k
views
News: My Ncbi Curriculum Vitae Web Application: Sciencv
ncbi
updated 13 months ago by 43k • written 10.6 years ago by 161k
3
votes
2
replies
3.8k
views
News: Course/Workshop: Informatics For Rna-Sequence Analysis (June, 2013)
RNA-seq
updated 14 months ago by 43k • written 11.3 years ago by 20k
33
votes
5
replies
3.7k
views
News: FINAL CALL: Epigenetics Workshop - DNA Methylation Data Analysis (some last seats available)
Epigenetics Workshop Bisulfite-Sequencing
updated 12 months ago by 43k • written 7.9 years ago by ▴ 460
0
votes
0
replies
3.7k
views
News: Journal Of Bioinformatics Research Studies- Call For Papers
publication biology
updated 13 months ago by 43k • written 10.0 years ago by • 0
14
votes
3
replies
3.7k
views
News: Updated: Conference/Symposium/Seminar/Workshop alert 2018-2019
seminar symposium conference
updated 11 months ago by 43k • written 5.9 years ago by 5.8k
9
votes
4
replies
3.7k
views
News: Conference Announcement - Camda 2013
conference classification
updated 14 months ago by 43k • written 11.3 years ago by ▴ 240
5
votes
2
replies
3.7k
views
News: Tuesday 10/29 Live Tour Of New Features In Integrated Genome Browser 8
genome-browser RNA-seq ChIP-seq
updated 13 months ago by 43k • written 10.5 years ago by ★ 2.4k
11
votes
2
replies
3.7k
views
News: Coursera: Computational Molecular Evolution
course
updated 13 months ago by 43k • written 10.9 years ago by 161k
9
votes
5
replies
3.6k
views
News: SAMTOOLS 1.4 released
samtools
updated 11 months ago by 43k • written 7.1 years ago by 161k
6
votes
1
reply
3.6k
views
News: Symposium And Rna-Seq Data Analysis Workshop Charlotte May 13-14
RNA RNA-seq training
updated 13 months ago by 43k • written 10.1 years ago by ★ 2.4k
27
votes
7
replies
3.6k
views
News: The Biostar Swarm: A Visualization
biostars
updated 14 months ago by 43k • written 11.2 years ago by 100k
5
votes
1
reply
3.5k
views
News: Broad Gatk Haplotypecaller Speed Improved 2-4 X By Cooperation With Intel, And Incremental Multi-Sample Calling Made Possible!
gatk variant-calling
updated 13 months ago by 43k • written 10.1 years ago by ★ 5.3k
0
votes
1
reply
3.5k
views
News: Workshop: Introductory Population Genomics: From Data to Inference
next-gen SNP R
updated 12 months ago by 43k • written 7.4 years ago by ★ 2.5k
2
votes
0
replies
3.4k
views
News: Bioinformatics Open Days 2Nd Edition - 14 And 15 Of March, 2013 At The University Of Minho, Campus Gualtar, Braga, Portugal.
conference
updated 14 months ago by 43k • written 11.3 years ago by ▴ 20
0
votes
2
replies
3.4k
views
News: Course: Practical GWAS using Linux and R. 23-27 October 2017, Berlin (Germany)
GWAS Linux R
updated 11 months ago by 43k • written 6.6 years ago by ★ 2.5k
2
votes
0
replies
3.4k
views
News: Synthetic DNA/RNA Spike-in standards for NGS
RNA-Seq assay spike-in
updated 12 months ago by 43k • written 7.7 years ago by 141k
12
votes
8
replies
3.4k
views
News: 'Potential Rna-Dna Binding Site In Alu Repeat', Or 'Why Should I Allow Multiple Mapping Positions When Analyzing Chipseq Data?'
chipseq rna
updated 13 months ago by 43k • written 10.8 years ago by 11k
1
vote
0
replies
3.4k
views
News: Command Line Bioinformatics and High-throughput Sequencing Analysis Course
training course
updated 2.3 years ago by 43k • written 9.6 years ago by 7.4k
5
votes
2
replies
3.4k
views
News: Summary of AGBT 2015
AGBT2015 AGBT
updated 13 months ago by 43k • written 9.1 years ago by ▴ 650
10
votes
0
replies
3.4k
views
News: 1000 Genomes data on GRCh38
1000Genomes GRCh38 alts alignment
updated 19 months ago by 43k • written 8.5 years ago by ▴ 100
14
votes
4
replies
3.4k
views
News: FULL: NGS Data Analysis Workshop for Beginners in Munich (29 June - 1 Juli 2016)
RNA-Seq next-gen NGS
updated 21 months ago by 43k • written 8.2 years ago by 11k
10
votes
17
replies
3.4k
views
7 follow
News: Tell us what you think of the ENA browser?
ena
updated 12 months ago by 43k • written 7.4 years ago by ★ 1.8k
14
votes
5
replies
3.4k
views
News: Science Article On Social Influence Bias On Voting Patterns ("Herding") With Impact On Biostar.
meta biostars
updated 14 months ago by 43k • written 10.7 years ago by 54k
8
votes
1
reply
3.3k
views
News: LAST DAY TO REGISTER - NGS Workshop 2015: A Practical Introduction to NGS Data Analysis (Oxford, UK)
RNA-Seq workshop
updated 13 months ago by 43k • written 9.5 years ago by 11k
11
votes
0
replies
3.3k
views
News: BWA 0.7.11 is out, supports ALT contigs
BWA
updated 13 months ago by 43k • written 9.3 years ago by 104k
4
votes
3
replies
3.3k
views
News: CAFE v4.0 available
phylogenetics CAFE
updated 11 months ago by 43k • written 7.1 years ago by ▴ 150
9
votes
3
replies
3.3k
views
News: New Human Genome Assembly (Grch38) Released
human-genome assembly
updated 13 months ago by 43k • written 10.3 years ago by 161k
12
votes
0
replies
3.3k
views
News: Looking For Feedback On The Json Output For Ncbi E-Utilities
ncbi eutils
updated 14 months ago by 43k • written 11.4 years ago by ▴ 360
1,000 results • Page 2 of 20
Recent Votes
A: samtools sort bam file
Answer: Downloaded pdb's on rcsb.org
Comment: Downloaded pdb's on rcsb.org
Comment: Downloaded pdb's on rcsb.org
Comment: Downloaded pdb's on rcsb.org
Answer: Downloaded pdb's on rcsb.org
Comment: Downloaded pdb's on rcsb.org
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Answer: Adding CB tag to bam file by swbarnes2 14k
Shouldn't you use PicardTools for this?
Comment: Downloaded pdb's on rcsb.org by Ram 43k
Sure. Or, one could do: bash try.bash "Homo sapiens" AHR | xargs -I v_pdb curl -s -o v_pdb.pdb https://files.rcsb.org/view/v_pdb.pdb
Comment: Downloaded pdb's on rcsb.org by iamsmor • 0
thank you so much
Comment: Downloaded pdb's on rcsb.org by GenoMax 141k
This may be the best option. Get the PDB ID's $ ./get.sh "Mus musculus" AHR 4M4X 5NJ8 5V0L 8H77 Then use `curl` to g…
Comment: Downloaded pdb's on rcsb.org by Ram 43k
It gives you the first 25 results though. I'll see if I can change that. EDIT: I've updated that number to 250. I'm hoping you won't need …
Comment: Downloaded pdb's on rcsb.org by iamsmor • 0
thank you very much
Answer: Downloaded pdb's on rcsb.org by Ram 43k
I'm going to build off of OP's query and give them a simple script: ```bash organism=$(echo $1 | sed 's/ /%20/g') gene=$2 curl -s https:/…
Comment: miRNAs quantification using mirdeep2 tool by GenoMax 141k
This question does not make complete sense. If you have your own data files why do you need deep sequencing reads? Genome (can be download…
Comment: Downloaded pdb's on rcsb.org by GenoMax 141k
For a non-programmer using the search builder link included above may be the best option. Even that is not very user friendly.
Comment: Downloaded pdb's on rcsb.org by Ram 43k
That's how they seem to have written their query - automating that is a bit of a pain though as it takes a crazy JSON as input.
Comment: Downloaded pdb's on rcsb.org by GenoMax 141k
You can use the "Advanced query" builder (https://www.rcsb.org/search/advanced ) to create a query like: https://www.rcsb.org/search?requ…
Comment: Downloaded pdb's on rcsb.org by Ram 43k
PDB has a search API: https://search.rcsb.org/#search-example-1 Here's the JSON from your search query: ``` { "query": { "type": "grou…
Comment: Downloaded pdb's on rcsb.org by iamsmor • 0
Thank you very much. Actually I looked at there, but actually I want to find something like according to search url like this [QUERY: Gene …
Comment: DEG analysis of RNA-seq data across multiple tissues and two conditions by BioinfGuru ★ 1.7k
great guidance ... thank you
Comment: error in CPC2 by Ram 43k
Ashok, what is CPC2? Please edit your post and add as much context as you can.
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