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242
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News: Metagenomics tools recommeder system
NGS Metagenomics Recommender-system
updated 11 weeks ago by 38k • written 11 weeks ago by • 0
0
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0
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341
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News: Hands-On NGS Data Analysis Workshops 2023
NGS Workshop RNA-Seq DNA-Seq
11 weeks ago by David Langenberger 9.9k
1
vote
5
replies
675
views
News: Cancer Genomics course - 2 seats left
Genomics Cancer-Genomics R
updated 8 weeks ago by 38k • written 12 weeks ago by ★ 2.3k
0
votes
0
replies
231
views
News: Course on Generalised Additive Models In R
Statistics GAMs R
11 weeks ago by carlopecoraro2 ★ 2.3k
0
votes
1
reply
403
views
News: Sex Chromosome Evolution course
Genomics Sex-Chromosome-Evolution
updated 8 weeks ago by 38k • written 12 weeks ago by ★ 2.3k
1
vote
2
replies
558
views
News: New chat server (Discord) for bioinformatics
community
11 weeks ago by Samuel Lampa ★ 1.3k
0
votes
0
replies
293
views
News: Online course - Genome Assembly and Annotation
Long-reads Genome-Annotation Biodiversity Genome-Assembly
updated 8 weeks ago by 38k • written 12 weeks ago by ★ 2.3k
1
vote
3
replies
493
views
News: NCBI BLAST ClusteredNR database now available for blastx and PSI-BLAST searches
PSI-BLAST blastx BLAST NCBI ClusteredNR
12 weeks ago by PeterC_NCBI ▴ 210
1
vote
0
replies
810
views
News: New ebook: From cell line to Command line to learn computational biology
snakemake biology unix RNAseq computational
3 months ago by Ming Tommy Tang ★ 2.9k
0
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0
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362
views
News: Winter School in Bioinformatics - last seats available
Genomics Unix RNA-seq docker
updated 8 weeks ago by 38k • written 3 months ago by ★ 2.3k
0
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0
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248
views
News: Virtual RNA-seq Analysis (Model Organism) Workshop
virtual expression rna-seq analysis workshop
3 months ago by mia.nahom ▴ 10
0
votes
0
replies
278
views
News: Introduction to R Shiny course
WebApplications R RShiny
3 months ago by carlopecoraro2 ★ 2.3k
1
vote
0
replies
317
views
News: New version of ElasticBLAST (1.0.0) available.
NCBI ElasticBLAST BLAST
3 months ago by PeterC_NCBI ▴ 210
0
votes
1
reply
309
views
News: Courses in January - still a few seats available
R-Shiny Genomics Unix R
updated 8 weeks ago by 38k • written 3 months ago by ★ 2.3k
0
votes
0
replies
195
views
News: Sex Chromosome Evolution course
Genomics Sex-Chromosome-Evolution
updated 3 months ago by 38k • written 3 months ago by ★ 2.3k
0
votes
0
replies
242
views
News: Cellosaurus release 44 is available
cellosaurus cell-line
updated 3 months ago by 38k • written 3 months ago by ▴ 110
0
votes
0
replies
222
views
News: Introductory video to the Cellosaurus
cellosaurus cell-line
updated 3 months ago by 38k • written 3 months ago by ▴ 110
0
votes
3
replies
520
views
News: Nvidia Clara Parabricks is FREE for R&D
nvidia workflow gpu
updated 3 months ago by 2.6k • written 3 months ago by 153k
2
votes
3
replies
347
views
News: NCBI Comparative Genome Viewer now allows searches for genes across aligned assemblies
Browser NCBI Alignments Genome
3 months ago by PeterC_NCBI ▴ 210
1
vote
6
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690
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News: Course - FLOW CYTOMETRY ANALYSIS WITH R/BIOCONDUCTOR
Bioconductor FlowCytometry R
updated 11 weeks ago by ▴ 70 • written 3 months ago by ★ 2.3k
0
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0
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188
views
News: INTRODUCTION TO ANALYTICAL PALEOBIOLOGY: FOSSIL RECORD BIASES, DIVERSITY, & BIOGEOGRAPHY
Biogeography Paleobiology R
3 months ago by carlopecoraro2 ★ 2.3k
1
vote
0
replies
202
views
News: Analysis of Cancer Genomes Using R and Bioinformatic Tools
Genomics Cancer-Genomics R
updated 3 months ago by 38k • written 3 months ago by ★ 2.3k
0
votes
0
replies
321
views
News: course - GENOME ASSEMBLY USING OXFORD NANOPORE SEQUENCING
Long-reads Assembly Nanopore Genome
3 months ago by carlopecoraro2 ★ 2.3k
0
votes
0
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174
views
News: Online training - VERSION CONTROL FOR RESEARCHERS
Version Control Git Github
3 months ago by carlopecoraro2 ★ 2.3k
0
votes
1
reply
244
views
News: Research Training In NGS Data Analysis
analysis data-analysis
updated 4 months ago by 38k • written 4 months ago by • 0
0
votes
0
replies
285
views
News: Bayesian regression modeling in R course
RegressionModeling Bayesian R
4 months ago by carlopecoraro2 ★ 2.3k
0
votes
4
replies
469
views
News: Ensembl Release 104 and newer GTF files no longer have genes sorted by position
Ensembl GTF
updated 3 months ago by ★ 2.2k • written 4 months ago by ▴ 10
0
votes
0
replies
228
views
News: Genome Assembly and Annotation course
Annotation Nanopore GenomeAssembly Pacbio
4 months ago by carlopecoraro2 ★ 2.3k
3
votes
0
replies
962
views
News: Changes to the default NCBI BLAST nucleotide database (nt). Learn more and provide feedback!
NCBI Databases BLAST
4 months ago by PeterC_NCBI ▴ 210
0
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0
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236
views
News: Nextflow online training
Nextflow Workflow Reproducibility
updated 3 months ago by 38k • written 4 months ago by ★ 2.3k
0
votes
2
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957
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News: :: FINAL CALL :: Next-Generation Sequencing Data Analysis: A Practical Introduction (December 12-14, 2022 in Munich, Germany)
rnaseq dnaseq sequencing ngs workshop
4 months ago by David Langenberger 9.9k
0
votes
0
replies
268
views
News: The Association for Single Cell Analysis (ASCA)
genomics singlecell metabolomics sequencing proteomics
4 months ago by dnsv.ev • 0
0
votes
0
replies
221
views
News: Deep Learning in Population Genomics and Phylogeography
DeepLearning Phylogeography PopulationGenomics
4 months ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
233
views
News: Metabarcoding in Microbial Ecology Workshop
Qiime2 R Metabarcoding Microbial-Ecology
5 months ago by carlopecoraro2 ★ 2.3k
1
vote
2
replies
358
views
News: Gene Set Enrichment Analysis in R/Bioconductor
Gene-Set-Enrichment-Analysis R Cancer-Genomics GSEA
5 months ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
231
views
News: Analysis of RNA sequencing data with R/Bioconductor course.
Bioconductor RNAseq R
5 months ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
336
views
News: Winter School in Bioinformatics
course workshop
updated 3 months ago by 38k • written 5 months ago by ★ 2.3k
1
vote
0
replies
307
views
News: Introduction to Nextflow
Nextflow
updated 3 months ago by 38k • written 5 months ago by ★ 2.3k
0
votes
2
replies
459
views
News: Seascape Genomics in R
Genomics Seascape R
updated 3 months ago by 38k • written 5 months ago by ★ 2.3k
0
votes
0
replies
226
views
News: Bioinformatics courses in November
Bioconductor Genomics R
updated 3 months ago by 38k • written 5 months ago by ★ 2.3k
0
votes
0
replies
326
views
News: Flow cytometry analysis with R/Bioconductor course
Bioconductor R Cytometry Flow
5 months ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
227
views
News: course: RNA-seq analyses in non-model organisms
differential Bioconductor RNAseq expression non-model organisms analysis R
5 months ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
252
views
News: course - Developing R/Bioconductor packages for genomics
developing package Bioconductor Genomics R
5 months ago by carlopecoraro2 ★ 2.3k
2
votes
0
replies
267
views
News: Four NCBI workshops in October (BLAST, Primer-BLAST, Metagenome analysis, Structures in iCn3D)
metagenomics MagicBLAST BLAST NCBI Primer-BLAST
5 months ago by PeterC_NCBI ▴ 210
0
votes
0
replies
333
views
News: course - Unix and shell scripting for bioinformatics
bash Shell-scripting Unix
updated 3 months ago by 38k • written 5 months ago by ★ 2.3k
0
votes
0
replies
278
views
News: course: Data Visualization in Python
Visualisation Python Data
updated 6 months ago by 127k • written 6 months ago by ★ 2.3k
0
votes
0
replies
260
views
News: Seascape Genomics in R course
Genomics R Seascape Population
6 months ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
276
views
News: Cellosaurus API
line cell API
6 months ago by Amos Bairoch ▴ 110
0
votes
0
replies
276
views
News: Cellosaurus release 43 is available
cellosaurus cell-line
updated 3 months ago by 38k • written 6 months ago by ▴ 110
0
votes
0
replies
232
views
News: Genomics Webinar: Using Mastermind’s New ClinVar Integration to Accelerate Clinical Diagnoses
variant-interpretation genomics database webinar
updated 3 months ago by 38k • written 6 months ago by • 0
468 results • Page 2 of 10
Recent Votes
Answer: how can i filter a sam file from a paf file
Answer: Align miRNA library (small RNA-seq) without trimming
Answer: Snakemake workflow for trimmomatic
C: Adjust for covariates
Comment: syntax errors when running part3 all-against-all
Picard LiftOver rejecting all Variants
Comment: pyCirclize - Circular visualization in Python
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Recent Replies
Comment: how can i filter a sam file from a paf file by colindaven 4.6k
Just save yourself a lot of pain and learn to filter the sam/bam file efficiently. It is much more of a widespread standard than PAF.
Comment: Snakemake workflow for trimmomatic by GenoMax 127k
Please accept this answer (green check mark) to provide closure to this thread.
Comment: syntax errors when running part3 all-against-all by Sofia • 0
When I started with the gz all-vs-all files for CHICK and ANOCA and started oma, everything ran fine, I got output. Then, in the same direc…
Comment: Quality control of Chip-seq data (NRF and PCB) by michelafrancesconi9 • 0
Can you explain me better? Because for the NRF I do : a) samtools view -c .bam b)samtools view -c -F 260 .bam then b/a and as a bam fi…
Comment: pyCirclize - Circular visualization in Python by karenkvn ▴ 40
Thank you for responding so quickly - this works perfectly!
Comment: pyCirclize - Circular visualization in Python by moshi ▴ 110
Please install Biopython with v1.80 or higher. If biopython>=1.80, there should be no errors.
Comment: Gene family classification using RNA-seq data by Dion • 0
well, I have been given the task to retrieve gene family/categorization. I found sveral papers on family classification, but no actual pack…
Comment: pyCirclize - Circular visualization in Python by karenkvn ▴ 40
Thank you for this wonderful programme! I am plotting a bacterial chromosome and find that when I plot the NC_000913 chromosome using the e…
Comment: SKAT in R by Eliza ▴ 20
@acvill can you sujjest maybe pther tools , methods for this ? ( also for every SNP i have data how many patients had the hetro/homozygous…
Comment: TCGA-BRCA tissue and RNAseq problem by pinheirofabiano ▴ 10
Go to https://portal.gdc.cancer.gov > Exploration > select TCGA and the cancer type you want > select case ID to download the files and hav…
Comment: Snakemake workflow for trimmomatic by antoine.fauchois92 • 0
Thank you very much for your reply ! It's working now !
Comment: Dependent p values by Eliza ▴ 20
@lchart I'm sorry for asking another of questions but I'm new to this field , can you please explain a little more how to use SKAT , saige…
Comment: How to deal with the probe id mapping to multiple gene ids? by dare_devil ★ 1.7k
similar question [here][1], [here][2] and [here][3] [1]: https://support.bioconductor.org/p/54838/ [2]: https://support.bioconductor.…
Comment: How to deal with the probe id mapping to multiple gene ids? by dare_devil ★ 1.7k
@genomax I have used the same platform file only. If you look at probe id and their corresponding `Gene Symbol` or `ENTREZ_GENE_ID` you can…
Comment: How to deal with the probe id mapping to multiple gene ids? by GenoMax 127k
Where are you seeing this? [Platform file for this array][1] on GEO has these names uniquely assigned. [1]: https://www.ncbi.nlm.nih.go…
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