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454 results • Page 2 of 10
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News: What NGS courses would you like us to prepare for 2016? (one week left)
NGS Survey Workshop
updated 7 months ago by 38k • written 7.3 years ago by 9.9k
3
votes
4
replies
1.7k
views
News: OmicCircos was updated
R OmicCircos
updated 10 months ago by 38k • written 8.0 years ago by ▴ 50
15
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4
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2.3k
views
News: Call For Nominations: 2013 Benjamin Franklin Award
benjamin-franklin-award award
updated 27 days ago by 38k • written 10.1 years ago by 153k
0
votes
4
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453
views
News: Ensembl Release 104 and newer GTF files no longer have genes sorted by position
Ensembl GTF
updated 3 months ago by ★ 2.2k • written 4 months ago by ▴ 10
14
votes
4
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3.0k
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News: FULL: NGS Data Analysis Workshop for Beginners in Munich (29 June - 1 Juli 2016)
RNA-Seq next-gen NGS
updated 8 months ago by 38k • written 7.1 years ago by 9.9k
10
votes
4
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623
views
News: Good morning
good morning
updated 6 months ago by 97k • written 6 months ago by 84k
0
votes
3
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500
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News: Nvidia Clara Parabricks is FREE for R&D
nvidia workflow gpu
updated 3 months ago by 2.6k • written 3 months ago by 153k
5
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3
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1.3k
views
News: Bioinfo-Core Conference Call, October 17, 2017 (11 am EDT USA, local times around world)
bioinfo-core
updated 1 day ago by 38k • written 5.6 years ago by 127k
5
votes
3
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367
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News: March 13-16: Virtual Nextflow and nf-core training event in 5 languages
nf-core pipeline Nextflow
updated 2 days ago by ▴ 230 • written 4 weeks ago by 3.4k
2
votes
3
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2.8k
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News: Summer Course On Analyzing Next-Generation Sequencing Data, June 10-20, Kellog Biological Station, Michigan State University
education
updated 27 days ago by 38k • written 10.1 years ago by 97k
4
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3
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1.7k
views
News: Proteomics and Genomics Submit your Research Journals
Research Genomics Journals Proteomics
updated 3 months ago by 38k • written 7.7 years ago by • 0
20
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3
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2.3k
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News: Nature Comment: Core services: Reward bioinformaticians
career-path
updated 9 months ago by 38k • written 8.0 years ago by ★ 2.2k
0
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3
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980
views
News: Less Than One Month Remaining until the Submission Deadline for Phase 1 of the NCTR Indel Calling from Oncopanel Sequencing Data Challenge!
oncopanel indel-calling
updated 3 months ago by 38k • written 9 months ago by ▴ 10
5
votes
3
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1.8k
views
News: Nhgri Meeting About Human Variation Analysis Live Streaming [Now Done]
next-gen exome variation
updated 28 days ago by 38k • written 10.5 years ago by 11k
4
votes
3
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2.0k
views
News: India Recently Started Personal Genome Profiling, Commercially.
genome-profiling
updated 26 days ago by 38k • written 9.9 years ago by ▴ 960
3
votes
3
replies
2.1k
views
News: Innocentive Challenge: Identify Organisms From A Stream Of Dna Sequences And Get $1,000,000
ngs
updated 26 days ago by 38k • written 9.9 years ago by ▴ 830
1
vote
3
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482
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News: NCBI BLAST ClusteredNR database now available for blastx and PSI-BLAST searches
PSI-BLAST blastx BLAST NCBI ClusteredNR
10 weeks ago by PeterC_NCBI ▴ 190
0
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3
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334
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News: NCBI update complete. Aspera users please update your client.
NCBI Submissions GenBank
6 weeks ago by PeterC_NCBI ▴ 190
22
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3
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2.7k
views
News: Biostar: 10,000 Question Milestone
meta
updated 25 days ago by 38k • written 9.8 years ago by 97k
7
votes
3
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4.2k
views
News: Pathway Commons 2 - Search And Visualize Public Biological Pathway Information. Single Point Of Access.
api cytoscape
updated 20 days ago by 38k • written 9.3 years ago by ★ 1.2k
15
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3
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6.4k
views
News: Top Bioinformatics Contributions Of 2013
bioinformatics
updated 20 days ago by 38k • written 9.3 years ago by ★ 1.1k
18
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3
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2.2k
views
News: LAST CALL: Next-Generation Sequencing Data Analysis: A Practical Introduction (Frankfurt, Germany) - 2 seats left
DNA-Seq NGS Workshop Variant-Calling
updated 8 months ago by 38k • written 6.1 years ago by 9.9k
9
votes
3
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3.0k
views
News: New Human Genome Assembly (Grch38) Released
human-genome assembly
updated 20 days ago by 38k • written 9.2 years ago by 153k
3
votes
3
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3.6k
views
News: A Tale Of Next Generation Sequencing Platforms: Ion Torrent, Pacific Biosciences And Illumina Miseq
sequencing
updated 29 days ago by 38k • written 10.6 years ago by 97k
2
votes
3
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338
views
News: NCBI Comparative Genome Viewer now allows searches for genes across aligned assemblies
Browser NCBI Alignments Genome
3 months ago by PeterC_NCBI ▴ 190
3
votes
3
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738
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News: Want to automate your NGS analyses and create reproducible/scalable pipelines? Join our hands-on Nextflow workshop!
nextflow NGS pipeline
11 months ago by David Langenberger 9.9k
0
votes
2
replies
454
views
News: Seascape Genomics in R
Genomics Seascape R
updated 3 months ago by 38k • written 4 months ago by ★ 2.3k
0
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2
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949
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News: :: FINAL CALL :: Next-Generation Sequencing Data Analysis: A Practical Introduction (December 12-14, 2022 in Munich, Germany)
rnaseq dnaseq sequencing ngs workshop
4 months ago by David Langenberger 9.9k
0
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2
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1.8k
views
News: NVIDIA GPU Conference sponsorship for Biostars + updated advertising terms
biostars meta
updated 11 months ago by 38k • written 8.1 years ago by 97k
1
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2
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354
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News: Gene Set Enrichment Analysis in R/Bioconductor
Gene-Set-Enrichment-Analysis R Cancer-Genomics GSEA
4 months ago by carlopecoraro2 ★ 2.3k
7
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2
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2.1k
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News: Annotation of Zebrafish pri-miRNAs promoters and CAGE-seq detected active Drosha processing events.
Drosha-processing moRNAs pri-miRNAs zebrafish
updated 7 months ago by 38k • written 7.3 years ago by ★ 2.3k
1
vote
2
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361
views
News: Course: Network Analysis in R
NetworkAnalyis R
8 weeks ago by carlopecoraro2 ★ 2.3k
0
votes
2
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658
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News: Online Course - A Practical Introduction to NGS Data Analysis (February 01-03, 2023)
NGS DNAseq variant-calling RNAseq
8 weeks ago by David Langenberger 9.9k
8
votes
2
replies
653
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News: Save time and money through improved onboarding of your NGS data scientists
NGS data-analysis
updated 5 days ago by 38k • written 3.2 years ago by 9.9k
6
votes
2
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1.4k
views
News: Biostars On The Genome Technology Cover
biostars
updated 5 weeks ago by 38k • written 10.2 years ago by 97k
2
votes
2
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1.7k
views
News: BioC 2015, Bioconductor Annual Conference, July 20-22, Seattle, WA
Bioconductor Conference
updated 8 months ago by 38k • written 7.9 years ago by ★ 1.6k
6
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2
replies
2.0k
views
News: Galaxy-specific Biostar Instance
galaxy biostars
updated 5 weeks ago by 38k • written 8.9 years ago by ▴ 380
2
votes
2
replies
2.4k
views
News: ENCODE 2015: Research Applications and Users Meeting
workshop mouse-encode encode
updated 23 hours ago by 38k • written 7.8 years ago by 34k
0
votes
2
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2.2k
views
News: MinION Community Meeting: Thursday Dec 3rd (now live)
minion
updated 7 months ago by 38k • written 7.3 years ago by 97k
1
vote
2
replies
562
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News: Online training - Introduction to Nextflow
Bionfirmatics Pipeline Workflow Netflow
7 months ago by carlopecoraro2 ★ 2.3k
11
votes
2
replies
3.4k
views
News: Coursera: Computational Molecular Evolution
course
updated 25 days ago by 38k • written 9.8 years ago by 153k
5
votes
2
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3.4k
views
News: Tuesday 10/29 Live Tour Of New Features In Integrated Genome Browser 8
genome-browser RNA-seq ChIP-seq
updated 21 days ago by 38k • written 9.4 years ago by ★ 2.3k
2
votes
2
replies
496
views
News: Free online seminars/journal club
seminars journal-clubs
updated 13 days ago by 38k • written 2.7 years ago by ▴ 40
2
votes
2
replies
1.9k
views
News: Briefings In Bioinformatics International, Interdisciplinary, Multi-Level Bioinformatics Training And Education
education
updated 22 days ago by 38k • written 9.5 years ago by 153k
6
votes
2
replies
1.6k
views
News: Belly Button Biodiversity Project Requests Your Analysis
biodiversity project
updated 27 days ago by 38k • written 10.4 years ago by 11k
15
votes
2
replies
10k
views
News: Breaking News - Illumina MiniSeq
next-gen-sequencing
updated 7 months ago by 38k • written 7.2 years ago by ★ 1.3k
3
votes
2
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3.5k
views
News: Course/Workshop: Informatics For Rna-Sequence Analysis (June, 2013)
RNA-seq
updated 27 days ago by 38k • written 10.2 years ago by 20k
3
votes
2
replies
2.4k
views
News: Samtools/htslib v1.2 released
htslib samtools bcftools
updated 7 days ago by 38k • written 8.1 years ago by 103k
5
votes
2
replies
4.2k
views
News: GeneSCF (Gene Enrichment Tool): Advice to users
kegg GeneSCF GO annotation
updated 5 weeks ago by 38k • written 6.2 years ago by 7.4k
0
votes
2
replies
1.9k
views
News: Seqnews.Net: Discover And Share News On Next-Generation Sequencing
next-gen-sequencing
updated 27 days ago by 38k • written 10.3 years ago by 9.9k
454 results • Page 2 of 10
Recent Votes
Run nextflow sections sequentially
A: Looking For A Way To Count Total Length Of Regions Of Bed File
Comment: Manta and alignment name collision
Comment: Is there a site that takes a list of uniprot IDs/gene IDs as input and create ph
How is allelle frequency calculated ?
Comment: Can I use abundance from Tximport to compare the expression level of transcript
Get Amino Acid Changes From Snp Calls
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Popular Question to jms2520 ▴ 20
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Answer: API REST ALINGMENT by joselu ▴ 110
Yes, I agree, but is it possible to modify my code so that it doesn't return the error and keep waiting while the job is running? Thank yo…
Comment: ChIP-Seq Analysis Tutorial by ATpoint 70k
With all due respect, it is just words and not a single line of code. That's no tutorial.
Comment: Run nextflow sections sequentially by ATpoint 70k
You can make each alignment process emit a value, then gather/concat this value from all alignment jobs into a new value/variable and let t…
Comment: Manta and alignment name collision by German.M.Demidov ★ 2.9k
Thanks a lot! Will try both!
Comment: how to get to a VCF from bam files by GenoMax 127k
See: https://samtools.github.io/bcftools/howtos/variant-calling.html The `-O` option controls what kind of file you get. If you want regul…
Answer: List of cloud genomics companies by Simon • 0
[Basepair][1] is a point & click way of analyzing and visualizing a variety of genetic, transcriptomic and epigenetic NGS data types. …
Answer: Multiple samples and species with kallisto bus(tools) by dsull ★ 4.0k
Hello! There are two questions here: 1) Mixed species, and 2) Multiple samples Let's start with question 1: You don't really know what c…
Comment: What is exactly meant by "GENCODE TSS"? by ConvolutedGenome ▴ 10
I dont think im confusing the two, is what I meant: I originally said that the “start” coordinate of every entry termed “transcript” under…
Comment: getting coding exon information from Ensembl API by Ram 38k
Your account has been suspended for bad behavior. I've re-opened the posts that you deleted because those posts belong to the community, no…
Comment: Can I use abundance from Tximport to compare the expression level of transcript by Ram 38k
No. I think you can compare average TPMs as long as you explicitly mention that anywhere you report metrics but don't average counts.
Comment: Manta and alignment name collision by Pierre Lindenbaum 153k
I wrote https://jvarkit.readthedocs.io/en/latest/SamRemoveDuplicatedNames/ to remove this kind of reads, but I'm not sure it's what you're …
Comment: getting coding exon information from Ensembl API by Nobody ▴ 30
can you delete my account please, because i can't do it by myself. Thank you
Comment: Java -xmx option does not limit memory usage in the ImputePipelinePlugin? by twrl8 • 0
Thank you very much! I will try using the singularity options. Thank you for that aswell. I will keep an eye on the docker hub for newer v…
Comment: Is there a site that takes a list of uniprot IDs/gene IDs as input and create ph by Pierre Lindenbaum 153k
ncbi blast a sequence accession vs the other ? then select the multiple sequence alignment view ?
Comment: Can I use abundance from Tximport to compare the expression level of transcript by aimanbarki ▴ 20
So can I average 6 replicates??
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