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895 results • Page
2 of 18
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6
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0
replies
2.3k
views
News:
Bioinformatics internships with Google Summer of Code 2019
intern
Ensembl
GSOC
updated 10 months ago by
Ram
43k • written 5.1 years ago by
Emily
23k
0
votes
0
replies
2.3k
views
News:
Genomics Summer School- 6 weeks NGS Data Analysis Program
Data-Analysis
Exome
DNA-Seq
RNA-Seq
updated 11 months ago by
Ram
43k • written 7.0 years ago by
piyushkumartiwari
• 0
3
votes
5
replies
2.3k
views
News:
(18 August - "Enzyme Stability Prediction") A free webinar on on-going CAFA5 (Critical Assessment of Functional Annotation of proteins) challenge
gene-ontology
CAFA
protein
8 months ago by
Alexander
▴ 220
0
votes
0
replies
2.3k
views
News:
Workshop on Machine Learning for Transcriptomics Data
next-gen
RNA-Seq
updated 11 months ago by
Ram
43k • written 5.9 years ago by
elia.brodsky
▴ 340
5
votes
0
replies
2.2k
views
News:
[UPDATED] Hands-On NGS Data Analysis Workshops 2019
NGS
Bisulfite-Seq
RNA-Seq
DNA-Seq
updated 10 months ago by
Ram
43k • written 5.4 years ago by
David Langenberger
11k
38
votes
7
replies
2.2k
views
News:
2 last seats available - 7th Berlin Summer School in NGS Data Analysis (September 4-8 in Berlin)
Transcriptomics
DNA-Seq
Variant-Calling
RNA-Seq
8 months ago by
David Langenberger
11k
0
votes
0
replies
2.2k
views
News:
INTRODUCTION TO PYTHON FOR BIOLOGISTS
RNA-Seq
next-gen-sequencing
updated 11 months ago by
Ram
43k • written 6.2 years ago by
oliverhooker
▴ 110
0
votes
0
replies
2.2k
views
News:
Course: Geometric Morphometrics. 5-9 March 2018, Berlin (Germany)
R
Phylogenetics
Geometric-Morphometics
updated 11 months ago by
Ram
43k • written 6.6 years ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
2.2k
views
News:
Bioinformatics, Statistics and R for Next Generation Sequencing Data Analysis
next-gen-sequencing
updated 11 months ago by
Ram
43k • written 6.5 years ago by
baxy
▴ 170
0
votes
0
replies
2.2k
views
News:
Eukaryotic metabarcoding Workshop. February 26th-March 2nd, 2018 in Berlin
USEARCH
Obitools
Metabarcoding
updated 11 months ago by
Ram
43k • written 6.5 years ago by
carlopecoraro2
★ 2.5k
1
vote
0
replies
2.2k
views
News:
Masters In Biomedical Informatics / Bioinformatics, University of Southern California, Los Angeles, CA, USA
masters
students
updated 11 months ago by
Ram
43k • written 6.4 years ago by
david.w.craig
▴ 20
6
votes
7
replies
2.2k
views
News:
NCBI wants to remove quality scores from SRA
quality-scores
trimming
Assembly
genome
SRA
updated 10 months ago by
Ram
43k • written 3.8 years ago by
zhousun21
▴ 40
0
votes
0
replies
2.2k
views
News:
Course "Assembly and Annotation of genomes"
Assembly
RNA-Seq
mapping
genome
annotation
updated 11 months ago by
Ram
43k • written 6.7 years ago by
carlopecoraro2
★ 2.5k
1
vote
0
replies
2.2k
views
News:
WORKSHOP - Data visualisation and manipulation using Python
RNA-Seq
Data-visualisation
next-gen
gene
python
updated 11 months ago by
Ram
43k • written 7.1 years ago by
oliverhooker
▴ 110
1
vote
0
replies
2.2k
views
News:
UniProtKB FASTA headers: Addition of NCBI taxonomy identifier
swiss-prot
uniprot
taxonomy
fasta
updated 11 months ago by
Ram
43k • written 6.3 years ago by
Elisabeth Gasteiger
★ 2.4k
1
vote
0
replies
2.2k
views
News:
Course: Transposable elements. Berlin 23-27 April 2018
Trasposons
genome
alignment
Assembly
updated 11 months ago by
Ram
43k • written 6.5 years ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
2.2k
views
News:
Training in Bioinformatics for Beginners @ NIH, USA, April 17-20, 2018
beginners
training
updated 11 months ago by
Ram
43k • written 6.1 years ago by
AABI
▴ 140
0
votes
0
replies
2.1k
views
News:
Structural Bioinformatics Training Workshop & Hackathon 2017 - Application of Big Data Technology and 3D Visualization
Structural-Bioinformatics
Big-Data
updated 11 months ago by
Ram
43k • written 7.0 years ago by
peter.rose
▴ 110
0
votes
0
replies
2.1k
views
News:
Workshop: Metagenomics, Metatranscriptomics, and multi'omics for microbial community studies (9-13 April 2018 in Berlin)
Metatranscriptomics
omics
metagenomics
updated 11 months ago by
Ram
43k • written 6.1 years ago by
carlopecoraro2
★ 2.5k
6
votes
2
replies
2.1k
views
News:
RNA-Seq Data Analysis Workshop in Leipzig, Germany (09 - 12 October 2017)
NGS
RNA-Seq
workshop
updated 11 months ago by
Ram
43k • written 6.8 years ago by
David Langenberger
11k
0
votes
0
replies
2.1k
views
News:
Introduction to Python for Biologists, 11-15 September 2017, Edinburgh
programming
python
workshop
updated 11 months ago by
Ram
43k • written 6.7 years ago by
Bert Overduin
★ 3.7k
0
votes
0
replies
2.1k
views
News:
Course. Analysis of single cell RNA-seq data.5-9 February 2018 Berlin (Germany)
next-gen
RNA-Seq
updated 11 months ago by
Ram
43k • written 6.3 years ago by
carlopecoraro2
★ 2.5k
2
votes
0
replies
2.1k
views
News:
Workshop 'Analysis of single cell RNA-seq data' . 5-9 February 2018
RNA-Seq
scRNAseq
updated 11 months ago by
Ram
43k • written 6.5 years ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
2.1k
views
News:
Eukaryotic metabarcoding Workshop
USEARCH
NGS
obitools
blast
updated 11 months ago by
Ram
43k • written 6.9 years ago by
carlopecoraro2
★ 2.5k
10
votes
0
replies
2.1k
views
News:
Pan-Cancer Analysis of RNA Binding Proteins in ~7000 tumor samples
Pan-Cancer
mutations
TCGA
RNA-seq
cancer-driver
updated 11 months ago by
Ram
43k • written 6.2 years ago by
lsp03yjh
▴ 860
6
votes
13
replies
2.1k
views
News:
Ensembl reduced functionality: 10th March-16th April 2020
BLAT
VEP
Ensembl
service
updated 10 months ago by
Ram
43k • written 4.2 years ago by
Ben_Ensembl
★ 2.4k
0
votes
0
replies
2.1k
views
News:
Course: RADseq data analysis in Berlin (4-8/12/17)
RADseq
Stacks
updated 11 months ago by
Ram
43k • written 6.5 years ago by
carlopecoraro2
★ 2.5k
0
votes
2
replies
2.1k
views
News:
RNA-Seq Data Analysis Workshop in Berlin, Germany (13 - 16 March 2018)
NGS
RNA-Seq
sequencing
updated 11 months ago by
Ram
43k • written 6.3 years ago by
David Langenberger
11k
2
votes
3
replies
2.1k
views
News:
PDX Models: Tumor-stroma interaction
transcriptome
pdx
R
ChIP-Seq
updated 11 months ago by
Ram
43k • written 6.7 years ago by
Pine Biotech
▴ 70
0
votes
0
replies
2.0k
views
News:
Workshop: RADseq data analysis in Berlin
next-gen
genome
SNP
updated 11 months ago by
Ram
43k • written 6.9 years ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
2.0k
views
News:
Introduction to Machine Learning Workshop
Machine-Learning
Big-Data
Python
updated 10 months ago by
Ram
43k • written 5.3 years ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
2.0k
views
News:
Course: Applied Statistics and Bioinformatics with R and Bioconductor. (Berlin, 22-26 January 2018)
BioConductor
Biostatistics
R
updated 11 months ago by
Ram
43k • written 6.6 years ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
2.0k
views
News:
Pine Biotech Public Data Analysis Projects
microbiome
cancer
genome
sequence
ngs
updated 11 months ago by
Ram
43k • written 6.7 years ago by
Pine Biotech
▴ 70
12
votes
4
replies
2.0k
views
News:
#NGSchool2018 summer school in bioinformatics
NGSchool
Personalised-Medicine
Nanopore
updated 11 months ago by
Ram
43k • written 5.9 years ago by
kzkedzierska
▴ 290
7
votes
11
replies
2.0k
views
News:
Bringing the power of Big Data to biomedical researchers
NGS
biomedical-research
updated 11 months ago by
Ram
43k • written 6.7 years ago by
Paul Kutzner
▴ 100
1
vote
4
replies
2.0k
views
News:
webserver of TCGA data www.tcgaportal.org
genome
RNA-Seq
TCGA
gene
updated 11 months ago by
Ram
43k • written 5.9 years ago by
xushutan
▴ 40
0
votes
0
replies
2.0k
views
News:
Metagenomics course. 9-13 April 2018
genome
R
Metagenomics
updated 11 months ago by
Ram
43k • written 6.2 years ago by
carlopecoraro2
★ 2.5k
0
votes
2
replies
2.0k
views
News:
Illumina iSeq 100 sequencer
firefly
illumina
iSeq100
updated 11 months ago by
Ram
43k • written 6.3 years ago by
GenoMax
141k
0
votes
1
reply
2.0k
views
News:
Course: Introduction to GWAS (BERLIN)
GWAS
R
Python
Snakemake
updated 10 months ago by
Ram
43k • written 4.5 years ago by
carlopecoraro2
★ 2.5k
3
votes
0
replies
2.0k
views
News:
Landscape Genomics course in Berlin (Germany). Registration deadline is next week
next-gen
R
Genomics
SNP
updated 11 months ago by
Ram
43k • written 6.9 years ago by
carlopecoraro2
★ 2.5k
3
votes
1
reply
2.0k
views
News:
Precision Medicine Bioinformatics: From raw genome and transcriptome data to clinical interpretation (PMBI01)
next-gen
assembly
RNA-Seq
gene
updated 11 months ago by
Ram
43k • written 6.2 years ago by
oliverhooker
▴ 110
2
votes
1
reply
2.0k
views
News:
Genomic Data Visualization and Interpretation Workshop
next-gen
R
genome
RNA-Seq
updated 11 months ago by
Ram
43k • written 6.8 years ago by
carlopecoraro2
★ 2.5k
2
votes
0
replies
1.9k
views
News:
Coding,data management and Shiny applications using RStudio for evolutionary biologists
coding
data-management
R
shiny
updated 11 months ago by
Ram
43k • written 7.1 years ago by
oliverhooker
▴ 110
1
vote
1
reply
1.9k
views
News:
Bioinformatics Contest 2017. Results
contest
updated 11 months ago by
Ram
43k • written 7.0 years ago by
pavlov.ivan095
▴ 70
8
votes
4
replies
1.9k
views
News:
supporting vg users on biostars
variation-graph
genome
vg
vgteam
updated 10 months ago by
Ram
43k • written 4.6 years ago by
Erik Garrison
★ 2.4k
4
votes
0
replies
1.9k
views
News:
Bioinformatics education: biology-inspired bioinformatics with project-based learning
education
RNA-seq
updated 11 months ago by
Ram
43k • written 6.0 years ago by
elia.brodsky
▴ 340
3
votes
0
replies
1.9k
views
News:
Free Training in Bioinformatic analysis available with Pine Biotech T-BioInfo
RNA-Seq
biotech
next-gen-sequencing
updated 11 months ago by
Ram
43k • written 6.8 years ago by
Pine Biotech
▴ 70
0
votes
0
replies
1.9k
views
News:
Course on "Introduction to Linux and workflows for biologists" in Berlin (7 spots left)
genome
next-gen
sequence
Assembly
updated 11 months ago by
Ram
43k • written 6.9 years ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
1.9k
views
News:
LAST CALL: Epigenetics Workshop - DNA Methylation Data Analysis (some last seats available)
bisulfite
NGS
methylation
workshop
updated 11 months ago by
Ram
43k • written 6.5 years ago by
David Langenberger
11k
3
votes
0
replies
1.9k
views
News:
Deep learning in GATK4
GATK4
deep-learning
GATK
updated 11 months ago by
Ram
43k • written 6.3 years ago by
vdauwera
★ 1.2k
895 results • Page
2 of 18
Recent Votes
Illumina reads preprocessing best practice for snp calling applications
Comment: Illumina reads preprocessing best practice for snp calling applications
Installing/switching between versions of R/Rstudio/Bioconductor
How To Generate Phylogeny Tree, Based On Snps?
How To Construct Phylogenetic Tree Using Snps
Basic normalization, batch correction and visualization of RNA-seq data
A: Read counts of STAR with gff file
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Comment: Illumina reads preprocessing best practice for snp calling applications
by
Enrique
• 0
Hi! I'm still interested in the step that you use for the SNP calling. Did you use `trimmomatic` or another tool for trimming before mappin…
Comment: Could you please assist in identifying this cluster?
by
ATpoint
81k
The information do not suffice. Please show plots and identified marker genes. Also, make sure it is not a trash cluster with low number of…
Comment: Free/open source 23andme-like analysis
by
joe
▴ 510
Thank you, I added 'accurate' now ;) I'm surprised to find out that there isn't some tool like multiqc that just summarizes all this infor…
Comment: Memory usage of picard Samsort
by
ATpoint
81k
Guys, just use `samtools sort` which won't get you into trouble with any of that.
Comment: Ciriquant not configuring hisat2 indexed files
by
Carlo Yague
8.6k
I don't know for sure, but I think that decreasing the amount of threads (1 or 2 instead of 4) will decrease the memory requirements of the…
Answer: Memory usage of picard Samsort
by
tamas.malkocs
• 0
For me, setting `TMP_DIR` (`--TMP_DIR /home/tmp`) didn't work in picard 2.21.1. What solved the issue was setting the environmental variabl…
Answer: Plink merge errors.
by
Dinmukhamed
• 0
I found answer https://www.biostars.org/p/101191/.
Comment: Ciriquant not configuring hisat2 indexed files
by
Atul K.
• 0
it worked. Thank you. Now my terminal is crashing, seems 16gb of RAM and 4 cores isn't enough. Can you suggest something?
Comment: Adding CB tag to bam file
by
Maria
• 0
I checked Picard ```AddOrReplaceReadsGroups``` and ```AddOATag```. Is that what you're referring to?
Comment: Free/open source 23andme-like analysis
by
Michael
54k
Noted that 'accurate' wasn't among your criteria ;) Anyway, most variant callers are free open-source software. However, for ancestry ana…
Answer: Mapping cDNA sequence of a single gene to a genome not hosted at UCSC server (wi
by
Pierre Lindenbaum
161k
> server so I cannot use Blat for this purpose. blat is avilable as a standane tool: http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86…
Answer: Mapping cDNA sequence of a single gene to a genome not hosted at UCSC server (wi
by
b.contreras.moreira
▴ 160
My favourite for this task would be [GMAP]( http://research-pub.gene.com/gmap ), which can produce GFF format with option `-f 2`. It is…
Answer: Prediction of Ribosomal RNA Genes Using RNAmmer Software
by
colindaven
6.3k
Another alternative is the truly free implementation barrnap https://github.com/tseemann/barrnap. This is also installable via conda so qui…
Comment: Filtration Of Reads With Length Lower Than 30 From Bam
by
Hagen
▴ 10
thanks! This saved me quite some time, I was about to write code to calculate the aligned length from the CIGAR. But this can be done with …
Comment: Per base sequence content failed miserably
by
Kai Xin
• 0
will look into that. Thank you very much
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