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1,000 results • Page
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News:
NCBI ClinVar XML update to accomodate somatic variants
SNP
NCBI
XML
ClinVar
11 weeks ago by
PeterC_NCBI
▴ 370
0
votes
0
replies
207
views
News:
Workshop on Virtual Screening on Drug Discovery from scratch (15-16 September, 2023 : 07.00 - 09.00 PM IST)
workshop
virtual-screening
updated 7 weeks ago by
Ram
41k • written 11 weeks ago by
sriv.reetesh
• 0
0
votes
0
replies
227
views
News:
RNAseq data analysis with R/Bioconductor
R
RNA-seq
Bioconductor
updated 8 weeks ago by
Ram
41k • written 11 weeks ago by
carlopecoraro2
★ 2.4k
0
votes
0
replies
247
views
News:
Course - RNAseq in non-model organisms
R
Differential-Expression-Analysis
RNA-seq
Bioconductor
updated 8 weeks ago by
Ram
41k • written 11 weeks ago by
carlopecoraro2
★ 2.4k
4
votes
2
replies
396
views
News:
Standalone NCBI ClusteredNR database now available for download
ClusteredNR
NCBI
standalone
BLAST
12 weeks ago by
PeterC_NCBI
▴ 370
0
votes
0
replies
239
views
News:
Virtual Variant Detection Workshop: September 11-14, 2023
tutorial
detection
genomics
workshop
variant
12 weeks ago by
mia.nahom
▴ 10
0
votes
0
replies
231
views
News:
Introduction to Deep Learning for Biologists course
Python
Deep-Learning
Machine-Learning
updated 12 weeks ago by
Ram
41k • written 12 weeks ago by
carlopecoraro2
★ 2.4k
0
votes
0
replies
224
views
News:
Course - Reproducibility Data Analysis with R
R
renv
Version-Control
Reproducibility
updated 8 weeks ago by
Ram
41k • written 12 weeks ago by
carlopecoraro2
★ 2.4k
0
votes
0
replies
311
views
News:
Online course: Easily analyze single cell RNA-seq data with Cellenics®, a user-friendly web-based platform
scRNA-seq
training
single-cell-RNA-seq
updated 3 months ago by
Ram
41k • written 3 months ago by
Sara
• 0
0
votes
0
replies
365
views
News:
Join Our Online Course: Incorporating Paleogenomes into Evolutionary Genomics Studies
Paleogenomics
Genomics
aDNA
Adaptation-Genomics
updated 3 months ago by
Ram
41k • written 3 months ago by
carlopecoraro2
★ 2.4k
0
votes
0
replies
234
views
News:
Course on Phylogenomics
Phylogenetic-Inference
Divergence-Time-Estimation
Genomics
Phylogenomics
updated 3 months ago by
Ram
41k • written 3 months ago by
carlopecoraro2
★ 2.4k
0
votes
0
replies
265
views
News:
Course. -Multivariate Data Analysis with R and vegan
R
vegan
MultivariateDataAnalysis
3 months ago by
carlopecoraro2
★ 2.4k
3
votes
2
replies
485
views
News:
NCBI BLAST+ 2.14.1 Now Available
NCBI
BLAST
3 months ago by
PeterC_NCBI
▴ 370
1
vote
0
replies
216
views
News:
Course - Introduction to CRISPR
CRISPR
Evolution
GenomeEditing
3 months ago by
carlopecoraro2
★ 2.4k
0
votes
0
replies
228
views
News:
Upcoming Learning Opportunities and Important Updates
R
Programming
aDNA
Paleogenomics
3 months ago by
carlopecoraro2
★ 2.4k
3
votes
5
replies
2.0k
views
News:
(18 August - "Enzyme Stability Prediction") A free webinar on on-going CAFA5 (Critical Assessment of Functional Annotation of proteins) challenge
gene-ontology
CAFA
protein
3 months ago by
Alexander
▴ 200
0
votes
0
replies
271
views
News:
Spatial Omics course
Spatial-Omics
Multiplexed-Image-Analysis
updated 8 weeks ago by
Ram
41k • written 3 months ago by
carlopecoraro2
★ 2.4k
1
vote
0
replies
345
views
News:
Generalized Additive Models in R
R
GAMs
Courses
3 months ago by
carlopecoraro2
★ 2.4k
0
votes
0
replies
234
views
News:
NIAID Data Ecosystem Discovery Portal
databases
data
opendata
api
3 months ago by
ehaag
▴ 20
0
votes
0
replies
305
views
News:
Course - Structural Variant detection and comparison
SVs
Structural-Variants
updated 3 months ago by
Ram
41k • written 3 months ago by
carlopecoraro2
★ 2.4k
0
votes
0
replies
274
views
News:
course -Developing R/Bioconductor Packages for Genomics
R
Genomics
Bioconductor
updated 3 months ago by
Ram
41k • written 3 months ago by
carlopecoraro2
★ 2.4k
4
votes
3
replies
787
views
News:
You may need to cleanup duplicate NCBI BLAST nt database volumes on your system
databases
NCBI
BLAST
3 months ago by
PeterC_NCBI
▴ 370
0
votes
0
replies
300
views
News:
Course - Data Visualization in R with ggplot2
R
Data-Visualization
ggplot2
updated 4 months ago by
Ram
41k • written 4 months ago by
carlopecoraro2
★ 2.4k
38
votes
7
replies
1.9k
views
News:
2 last seats available - 7th Berlin Summer School in NGS Data Analysis (September 4-8 in Berlin)
Transcriptomics
DNA-Seq
Variant-Calling
RNA-Seq
4 months ago by
David Langenberger
10k
9
votes
4
replies
2.3k
views
7 follow
News:
fastp 0.22 released, with new FASTQ deduplication feature.
fastp
updated 4 months ago by
Ram
41k • written 2.3 years ago by
chen
★ 2.5k
0
votes
0
replies
352
views
News:
Course - RADseq data analysis with Stacks
RADseq
Phylogenomics
Stacks
Population-genomics
updated 3 months ago by
Ram
41k • written 4 months ago by
carlopecoraro2
★ 2.4k
0
votes
0
replies
306
views
News:
course - DNA METHYLATION IN ECOLOGY AND EVOLUTION
Non-Model-Organisms
DNA-Methylation
BS-seq
updated 3 months ago by
Ram
41k • written 4 months ago by
carlopecoraro2
★ 2.4k
2
votes
0
replies
416
views
News:
Registration open for Nextflow Summit 2023, and free online Nextflow / nf-core training
nextflow
4 months ago by
Marcel Ribeiro-Dantas
▴ 450
0
votes
0
replies
316
views
News:
2-day Course on Introduction to Nextflow
Workflow
Reproducibility
Nextflow
updated 4 months ago by
Ram
41k • written 4 months ago by
carlopecoraro2
★ 2.4k
0
votes
0
replies
285
views
News:
Physalia courses in September
Genomics
R
Data-Science
updated 4 months ago by
Ram
41k • written 4 months ago by
carlopecoraro2
★ 2.4k
0
votes
0
replies
341
views
News:
Cellosaurus release 46
knowledgebase
cell-line
cellosaurus
5 months ago by
Amos Bairoch
▴ 110
0
votes
0
replies
260
views
News:
Course - Data Manipulation and Visualization in Python
Data-Manipulation
Data-Visualisation
Python
updated 5 months ago by
Ram
41k • written 5 months ago by
carlopecoraro2
★ 2.4k
0
votes
0
replies
402
views
News:
Kindle edition of book NO LONGER available. Book available for free
Computational-Biology
5 months ago by
sinha.shriprakash
▴ 20
0
votes
0
replies
363
views
News:
Course on Generalised Linear Mixed Models in R
GLMM
R
Statistics
Mixed-Models
updated 5 months ago by
Ram
41k • written 5 months ago by
carlopecoraro2
★ 2.4k
0
votes
0
replies
361
views
News:
Course - Network Analysis in Systems Biology with R/Bioconductor
R
Systems-Biology
Network-Analysis
Bioconductor
updated 3 months ago by
Ram
41k • written 5 months ago by
carlopecoraro2
★ 2.4k
0
votes
0
replies
267
views
News:
course on Reproducibility data analysis with R
R
Reproducibility
Git
Github
5 months ago by
carlopecoraro2
★ 2.4k
38
votes
8
replies
1.3k
views
6 follow
News:
What happens when a bioinformatician has his own genome sequenced for $300?
DNAseq
DNA
WGS
updated 5 months ago by
Alex Reynolds
35k • written 5 months ago by
David Langenberger
10k
4
votes
0
replies
463
views
News:
A Practical Introduction to Single-Cell RNA-Seq Data Analysis (November 8-10, 2023 in Berlin, Germany)
NGS
RNA-Seq
single-cell
workshop
5 months ago by
David Langenberger
10k
0
votes
0
replies
531
views
News:
Hands-On NGS Data Analysis Courses 2023
RNA-seq
DNA-seq
Workshop
updated 5 months ago by
Ram
41k • written 5 months ago by
David Langenberger
10k
1
vote
0
replies
341
views
News:
Course - Introduction to Deep Learning for biologists
Genomics
Deep-Learning
Python
NGS
updated 5 months ago by
Ram
41k • written 5 months ago by
carlopecoraro2
★ 2.4k
1
vote
0
replies
348
views
News:
Good bioinformatics training resources
NGS
updated 5 months ago by
Pierre Lindenbaum
158k • written 5 months ago by
ManuelDB
▴ 80
0
votes
0
replies
413
views
News:
Generalized Linear Models (GLM) course in R
R
GLM
statistics
6 months ago by
carlopecoraro2
★ 2.4k
0
votes
0
replies
386
views
News:
course - Advanced Python programming
Python
Deep-Learning
Machine-Learning
updated 3 months ago by
Ram
41k • written 6 months ago by
carlopecoraro2
★ 2.4k
3
votes
2
replies
573
views
News:
Participate in a NCBI/NIAID Virtual Codeathon: VCF Files for Population Genomics, Jul 31 - Aug 4, 2023
VCF
SARS-CoV-2
NCBI
Codeathon
6 months ago by
PeterC_NCBI
▴ 370
0
votes
0
replies
299
views
News:
Virtual Genome Annotation Workshop
annotation
genome
workshop
6 months ago by
mia.nahom
▴ 10
0
votes
0
replies
522
views
News:
Course - Longitudinal data analysis in R
Longitudinal-Data
R
Genomics
updated 6 months ago by
Ram
41k • written 6 months ago by
carlopecoraro2
★ 2.4k
0
votes
0
replies
308
views
News:
New version of ElasticBLAST (1.1.0) available from NCBI
ElasticBLAST
BLAST.
NCBI
6 months ago by
PeterC_NCBI
▴ 370
0
votes
0
replies
293
views
News:
Course - Introduction to CRISPR for Ecology and Evolution Studies
Genomics
CRISPR
6 months ago by
carlopecoraro2
★ 2.4k
0
votes
0
replies
1.2k
views
News:
GWAS course
GWAS
R
updated 6 months ago by
Ram
41k • written 6 months ago by
carlopecoraro2
★ 2.4k
0
votes
0
replies
390
views
News:
Course - RNAseq data analysis with R/Bioconductor
R
Tidyverse
RNA-seq
Bioconductor
updated 3 months ago by
Ram
41k • written 6 months ago by
carlopecoraro2
★ 2.4k
1,000 results • Page
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Recent Votes
Answer: Problematic fastq files...How can we trust them?
Comment: Problematic fastq files...How can we trust them?
Comment: Problematic fastq files...How can we trust them?
Comment: Problematic fastq files...How can we trust them?
Answer: Problematic fastq files...How can we trust them?
Comment: Is there a need to batch correct FPKM or TPM values for within sample comparison
Answer: How Can I move the scattered dots more closer into the center of box ?
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Answer: GO categorization
by
geneontologyhelp
▴ 250
[We have this in our FAQ][1]. PANTHER version 18.0, which powers the enrichment analysis on our homepage, has [143 species][2] loaded and …
Comment: Problematic fastq files...How can we trust them?
by
blackadder
▴ 30
Thanks for the feedback fellas! I agree with the aforementioned!
Comment: Which program, tool, or strategy do you use to visualize genomic rearrangements?
by
cmdcolin
★ 3.4k
i collect a large list of tools for visualization, some are specialized for SVs and re-arrangements. you can filter by tag (SV, CNV, compar…
Answer: The number of variations in the pan-genome is reduced compared to the variations
by
Jordan M Eizenga
▴ 410
If variants overlap in the genome, `vg deconstruct` will combine them into one locus with multiple alleles. If your input VCF has a lot of …
Answer: How to find node Postion and source(sample) ?
by
Jordan M Eizenga
▴ 410
You can use `vg find -P` for this. This command is not really designed to be used frequently throughout the genome (each invocation loads t…
Comment: How Can I move the scattered dots more closer into the center of box ?
by
Brian Bushnell
19k
I would just draw them in by hand where you want them.
Comment: How to identify CG, CHG, or CHH from MeDIP data
by
Tm
★ 1.1k
I know that CpG types can be identified using whole genome bisulphite data. But could it be possible using MeDIP data too? We tried using Q…
Comment: Problematic fastq files...How can we trust them?
by
Brian Bushnell
19k
I'd have to agree there... while you can generally recover a fastq to the point that it is spec-compliant, you don't know how or why the f…
Answer: Finding human .vcf files online to download
by
cmdcolin
★ 3.4k
---------- some common ones include 1000 genomes vcf (large, multi-sample) http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/release/20130502/ …
Comment: GO categorization
by
m.habib
• 0
Thanks Istvan for your reply. I think these programs will do the same as Trinotate. Trinotate searches against numerous databases and gener…
Comment: scRNA-seq: Consistent low number of cells and low fraction reads across the samp
by
jv
★ 1.2k
I wonder if using cell hashing, which would allow pooling of cells from multiple samples before droplet formation, could improve things her…
Comment: Where Can I Find The Basepair Positions Of Chromosome Bands?
by
Malachi Griffith
19k
And the hg38 version can be found here: https://hgdownload.soe.ucsc.edu/goldenPath/hg38/database/cytoBand.txt.gz And for convenience, upda…
Answer: How Can I move the scattered dots more closer into the center of box ?
by
Trivas
★ 1.5k
You added a position dodge on your boxplot but not on your points.
Comment: How Can I move the scattered dots more closer into the center of box ?
by
ATpoint
78k
Please understand that biostars is not a helpdesk for trivial ggplot questions. Google it and find help on previous StackExchange sites, or…
Comment: Yes .. BBMap can do that! - Part III clumpify (mark (and dedupe) duplicates with
by
jucosie
• 0
Hello, I am reviewing some old scripts in which I used clumpify.sh (BBMap 38.90) with the following parameters: ./clumpify.sh in1=$d…
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