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News: NCBI ClinVar XML update to accomodate somatic variants
SNP NCBI XML ClinVar
11 weeks ago by PeterC_NCBI ▴ 370
0
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0
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207
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News: Workshop on Virtual Screening on Drug Discovery from scratch (15-16 September, 2023 : 07.00 - 09.00 PM IST)
workshop virtual-screening
updated 7 weeks ago by 41k • written 11 weeks ago by • 0
0
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0
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227
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News: RNAseq data analysis with R/Bioconductor
R RNA-seq Bioconductor
updated 8 weeks ago by 41k • written 11 weeks ago by ★ 2.4k
0
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0
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247
views
News: Course - RNAseq in non-model organisms
R Differential-Expression-Analysis RNA-seq Bioconductor
updated 8 weeks ago by 41k • written 11 weeks ago by ★ 2.4k
4
votes
2
replies
396
views
News: Standalone NCBI ClusteredNR database now available for download
ClusteredNR NCBI standalone BLAST
12 weeks ago by PeterC_NCBI ▴ 370
0
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0
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239
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News: Virtual Variant Detection Workshop: September 11-14, 2023
tutorial detection genomics workshop variant
12 weeks ago by mia.nahom ▴ 10
0
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0
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231
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News: Introduction to Deep Learning for Biologists course
Python Deep-Learning Machine-Learning
updated 12 weeks ago by 41k • written 12 weeks ago by ★ 2.4k
0
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0
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224
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News: Course - Reproducibility Data Analysis with R
R renv Version-Control Reproducibility
updated 8 weeks ago by 41k • written 12 weeks ago by ★ 2.4k
0
votes
0
replies
311
views
News: Online course: Easily analyze single cell RNA-seq data with Cellenics®, a user-friendly web-based platform
scRNA-seq training single-cell-RNA-seq
updated 3 months ago by 41k • written 3 months ago by • 0
0
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0
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365
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News: Join Our Online Course: Incorporating Paleogenomes into Evolutionary Genomics Studies
Paleogenomics Genomics aDNA Adaptation-Genomics
updated 3 months ago by 41k • written 3 months ago by ★ 2.4k
0
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0
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234
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News: Course on Phylogenomics
Phylogenetic-Inference Divergence-Time-Estimation Genomics Phylogenomics
updated 3 months ago by 41k • written 3 months ago by ★ 2.4k
0
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0
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265
views
News: Course. -Multivariate Data Analysis with R and vegan
R vegan MultivariateDataAnalysis
3 months ago by carlopecoraro2 ★ 2.4k
3
votes
2
replies
485
views
News: NCBI BLAST+ 2.14.1 Now Available
NCBI BLAST
3 months ago by PeterC_NCBI ▴ 370
1
vote
0
replies
216
views
News: Course - Introduction to CRISPR
CRISPR Evolution GenomeEditing
3 months ago by carlopecoraro2 ★ 2.4k
0
votes
0
replies
228
views
News: Upcoming Learning Opportunities and Important Updates
R Programming aDNA Paleogenomics
3 months ago by carlopecoraro2 ★ 2.4k
3
votes
5
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2.0k
views
News: (18 August - "Enzyme Stability Prediction") A free webinar on on-going CAFA5 (Critical Assessment of Functional Annotation of proteins) challenge
gene-ontology CAFA protein
3 months ago by Alexander ▴ 200
0
votes
0
replies
271
views
News: Spatial Omics course
Spatial-Omics Multiplexed-Image-Analysis
updated 8 weeks ago by 41k • written 3 months ago by ★ 2.4k
1
vote
0
replies
345
views
News: Generalized Additive Models in R
R GAMs Courses
3 months ago by carlopecoraro2 ★ 2.4k
0
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0
replies
234
views
News: NIAID Data Ecosystem Discovery Portal
databases data opendata api
3 months ago by ehaag ▴ 20
0
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0
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305
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News: Course - Structural Variant detection and comparison
SVs Structural-Variants
updated 3 months ago by 41k • written 3 months ago by ★ 2.4k
0
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0
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274
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News: course -Developing R/Bioconductor Packages for Genomics
R Genomics Bioconductor
updated 3 months ago by 41k • written 3 months ago by ★ 2.4k
4
votes
3
replies
787
views
News: You may need to cleanup duplicate NCBI BLAST nt database volumes on your system
databases NCBI BLAST
3 months ago by PeterC_NCBI ▴ 370
0
votes
0
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300
views
News: Course - Data Visualization in R with ggplot2
R Data-Visualization ggplot2
updated 4 months ago by 41k • written 4 months ago by ★ 2.4k
38
votes
7
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1.9k
views
News: 2 last seats available - 7th Berlin Summer School in NGS Data Analysis (September 4-8 in Berlin)
Transcriptomics DNA-Seq Variant-Calling RNA-Seq
4 months ago by David Langenberger 10k
9
votes
4
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2.3k
views
7 follow
News: fastp 0.22 released, with new FASTQ deduplication feature.
fastp
updated 4 months ago by 41k • written 2.3 years ago by ★ 2.5k
0
votes
0
replies
352
views
News: Course - RADseq data analysis with Stacks
RADseq Phylogenomics Stacks Population-genomics
updated 3 months ago by 41k • written 4 months ago by ★ 2.4k
0
votes
0
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306
views
News: course - DNA METHYLATION IN ECOLOGY AND EVOLUTION
Non-Model-Organisms DNA-Methylation BS-seq
updated 3 months ago by 41k • written 4 months ago by ★ 2.4k
2
votes
0
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416
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News: Registration open for Nextflow Summit 2023, and free online Nextflow / nf-core training
nextflow
4 months ago by Marcel Ribeiro-Dantas ▴ 450
0
votes
0
replies
316
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News: 2-day Course on Introduction to Nextflow
Workflow Reproducibility Nextflow
updated 4 months ago by 41k • written 4 months ago by ★ 2.4k
0
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0
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285
views
News: Physalia courses in September
Genomics R Data-Science
updated 4 months ago by 41k • written 4 months ago by ★ 2.4k
0
votes
0
replies
341
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News: Cellosaurus release 46
knowledgebase cell-line cellosaurus
5 months ago by Amos Bairoch ▴ 110
0
votes
0
replies
260
views
News: Course - Data Manipulation and Visualization in Python
Data-Manipulation Data-Visualisation Python
updated 5 months ago by 41k • written 5 months ago by ★ 2.4k
0
votes
0
replies
402
views
News: Kindle edition of book NO LONGER available. Book available for free
Computational-Biology
5 months ago by sinha.shriprakash ▴ 20
0
votes
0
replies
363
views
News: Course on Generalised Linear Mixed Models in R
GLMM R Statistics Mixed-Models
updated 5 months ago by 41k • written 5 months ago by ★ 2.4k
0
votes
0
replies
361
views
News: Course - Network Analysis in Systems Biology with R/Bioconductor
R Systems-Biology Network-Analysis Bioconductor
updated 3 months ago by 41k • written 5 months ago by ★ 2.4k
0
votes
0
replies
267
views
News: course on Reproducibility data analysis with R
R Reproducibility Git Github
5 months ago by carlopecoraro2 ★ 2.4k
38
votes
8
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1.3k
views
6 follow
News: What happens when a bioinformatician has his own genome sequenced for $300?
DNAseq DNA WGS
updated 5 months ago by 35k • written 5 months ago by 10k
4
votes
0
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463
views
News: A Practical Introduction to Single-Cell RNA-Seq Data Analysis (November 8-10, 2023 in Berlin, Germany)
NGS RNA-Seq single-cell workshop
5 months ago by David Langenberger 10k
0
votes
0
replies
531
views
News: Hands-On NGS Data Analysis Courses 2023
RNA-seq DNA-seq Workshop
updated 5 months ago by 41k • written 5 months ago by 10k
1
vote
0
replies
341
views
News: Course - Introduction to Deep Learning for biologists
Genomics Deep-Learning Python NGS
updated 5 months ago by 41k • written 5 months ago by ★ 2.4k
1
vote
0
replies
348
views
News: Good bioinformatics training resources
NGS
updated 5 months ago by 158k • written 5 months ago by ▴ 80
0
votes
0
replies
413
views
News: Generalized Linear Models (GLM) course in R
R GLM statistics
6 months ago by carlopecoraro2 ★ 2.4k
0
votes
0
replies
386
views
News: course - Advanced Python programming
Python Deep-Learning Machine-Learning
updated 3 months ago by 41k • written 6 months ago by ★ 2.4k
3
votes
2
replies
573
views
News: Participate in a NCBI/NIAID Virtual Codeathon: VCF Files for Population Genomics, Jul 31 - Aug 4, 2023
VCF SARS-CoV-2 NCBI Codeathon
6 months ago by PeterC_NCBI ▴ 370
0
votes
0
replies
299
views
News: Virtual Genome Annotation Workshop
annotation genome workshop
6 months ago by mia.nahom ▴ 10
0
votes
0
replies
522
views
News: Course - Longitudinal data analysis in R
Longitudinal-Data R Genomics
updated 6 months ago by 41k • written 6 months ago by ★ 2.4k
0
votes
0
replies
308
views
News: New version of ElasticBLAST (1.1.0) available from NCBI
ElasticBLAST BLAST. NCBI
6 months ago by PeterC_NCBI ▴ 370
0
votes
0
replies
293
views
News: Course - Introduction to CRISPR for Ecology and Evolution Studies
Genomics CRISPR
6 months ago by carlopecoraro2 ★ 2.4k
0
votes
0
replies
1.2k
views
News: GWAS course
GWAS R
updated 6 months ago by 41k • written 6 months ago by ★ 2.4k
0
votes
0
replies
390
views
News: Course - RNAseq data analysis with R/Bioconductor
R Tidyverse RNA-seq Bioconductor
updated 3 months ago by 41k • written 6 months ago by ★ 2.4k
1,000 results • Page 2 of 20
Recent Votes
Answer: Problematic fastq files...How can we trust them?
Comment: Problematic fastq files...How can we trust them?
Comment: Problematic fastq files...How can we trust them?
Comment: Problematic fastq files...How can we trust them?
Answer: Problematic fastq files...How can we trust them?
Comment: Is there a need to batch correct FPKM or TPM values for within sample comparison
Answer: How Can I move the scattered dots more closer into the center of box ?
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Popular Question to Gama313 ▴ 120
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Answer: GO categorization by geneontologyhelp ▴ 250
[We have this in our FAQ][1]. PANTHER version 18.0, which powers the enrichment analysis on our homepage, has [143 species][2] loaded and …
Comment: Problematic fastq files...How can we trust them? by blackadder ▴ 30
Thanks for the feedback fellas! I agree with the aforementioned!
Comment: Which program, tool, or strategy do you use to visualize genomic rearrangements? by cmdcolin ★ 3.4k
i collect a large list of tools for visualization, some are specialized for SVs and re-arrangements. you can filter by tag (SV, CNV, compar…
Answer: The number of variations in the pan-genome is reduced compared to the variations by Jordan M Eizenga ▴ 410
If variants overlap in the genome, `vg deconstruct` will combine them into one locus with multiple alleles. If your input VCF has a lot of …
Answer: How to find node Postion and source(sample) ? by Jordan M Eizenga ▴ 410
You can use `vg find -P` for this. This command is not really designed to be used frequently throughout the genome (each invocation loads t…
Comment: How Can I move the scattered dots more closer into the center of box ? by Brian Bushnell 19k
I would just draw them in by hand where you want them.
Comment: How to identify CG, CHG, or CHH from MeDIP data by Tm ★ 1.1k
I know that CpG types can be identified using whole genome bisulphite data. But could it be possible using MeDIP data too? We tried using Q…
Comment: Problematic fastq files...How can we trust them? by Brian Bushnell 19k
I'd have to agree there... while you can generally recover a fastq to the point that it is spec-compliant, you don't know how or why the f…
Answer: Finding human .vcf files online to download by cmdcolin ★ 3.4k
---------- some common ones include 1000 genomes vcf (large, multi-sample) http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/release/20130502/ …
Comment: GO categorization by m.habib • 0
Thanks Istvan for your reply. I think these programs will do the same as Trinotate. Trinotate searches against numerous databases and gener…
Comment: scRNA-seq: Consistent low number of cells and low fraction reads across the samp by jv ★ 1.2k
I wonder if using cell hashing, which would allow pooling of cells from multiple samples before droplet formation, could improve things her…
Comment: Where Can I Find The Basepair Positions Of Chromosome Bands? by Malachi Griffith 19k
And the hg38 version can be found here: https://hgdownload.soe.ucsc.edu/goldenPath/hg38/database/cytoBand.txt.gz And for convenience, upda…
Answer: How Can I move the scattered dots more closer into the center of box ? by Trivas ★ 1.5k
You added a position dodge on your boxplot but not on your points.
Comment: How Can I move the scattered dots more closer into the center of box ? by ATpoint 78k
Please understand that biostars is not a helpdesk for trivial ggplot questions. Google it and find help on previous StackExchange sites, or…
Comment: Yes .. BBMap can do that! - Part III clumpify (mark (and dedupe) duplicates with by jucosie • 0
Hello, I am reviewing some old scripts in which I used clumpify.sh (BBMap 38.90) with the following parameters: ./clumpify.sh in1=$d…
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