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News:
Free HiSeq X Ten human genome fastq test data
HiSeq-X-Ten
Human-genome
Fastq
next-gen
updated 14 months ago by
Ram
37k • written 8.5 years ago by
rbagnall
★ 1.8k
10
votes
7
replies
1.9k
views
News:
Free draft copy of book on bioinformatics tools
alignment
Assembly
RNA-seq
next-gen
updated 16 days ago by
Ram
37k • written 7.7 years ago by
ugly.betty77
★ 1.1k
6
votes
7
replies
2.5k
views
News:
New in DiffBind: dba.plotProfile() - Peak profiles and profile heatmaps
DiffBind
ChIP-seq
deepTools
visualization
ATAC-seq
4 months ago by
Rory Stark
★ 1.6k
25
votes
7
replies
5.7k
views
News:
Pubmed Commons : A System That Enables Researchers To Share Their Opinions About Scientific Publications
ncbi
pubmed
News
9.3 years ago by
Pierre Lindenbaum
152k
10
votes
7
replies
1.6k
views
News:
Linux for Biologists e-book (free to read online)
linux
python
galaxy
conda
virtual-machine
16 months ago by
vimalkvn
▴ 310
2
votes
6
replies
2.2k
views
News:
Master in integrated systems biology / Luxembourg
Master course
bioinformatics
systems biology
News
5.5 years ago by
Rainer
▴ 130
1
vote
6
replies
586
views
News:
Course - FLOW CYTOMETRY ANALYSIS WITH R/BIOCONDUCTOR
Bioconductor
FlowCytometry
R
updated 22 days ago by
synat.keam
▴ 70 • written 7 weeks ago by
carlopecoraro2
★ 2.2k
32
votes
6
replies
12k
views
7 follow
News:
Ncbi Releases Entrez Direct, The Entrez Utilities On The Unix Command Line
ncbi
linux
command-line
entrez
pubmed
genbank
News
updated 15 months ago by
Ram
37k • written 9.0 years ago by
Pierre Lindenbaum
152k
14
votes
6
replies
6.4k
views
News:
FINAL CALL: NGS Workshop - A Beginner's Guide to NGS Data Analysis (2 last seats)
NGS
RNA-Seq
workshop
updated 8 weeks ago by
Ram
37k • written 7.6 years ago by
David Langenberger
9.8k
3
votes
6
replies
2.3k
views
News:
Brief Getting Started with Broad Firecloud tutorial posted
RNA-Seq
News
6.6 years ago by
Sean Davis
26k
17
votes
6
replies
8.3k
views
News:
Final registration deadline: September 15th - Bioinformatics Hands-On NGS Data Analysis Workshops 2014
News
methylation
rna-seq
updated 16 months ago by
Ram
37k • written 8.9 years ago by
David Langenberger
9.8k
8
votes
6
replies
1.1k
views
News:
Illumina to Acquire Pacific Biosciences
illumina
pacbio
News
4.3 years ago by
Istvan Albert
96k
8
votes
6
replies
16k
views
News:
Bioinformatics PhD Programs in the US
education
PhD
News
3.9 years ago by
Ahmed Youssef
▴ 70
9
votes
6
replies
1.8k
views
News:
No more hidden solutions in bioinformatics
precision-medicine
genome-sequencing
updated 16 days ago by
Ram
37k • written 7.7 years ago by
HG
★ 1.2k
8
votes
6
replies
3.7k
views
News:
Last Call: Upcoming Workshop - Rna-Seq Bioinformatics: A Practical Introduction
rna-seq
bioinformatics
News
10.0 years ago by
David Langenberger
9.8k
0
votes
5
replies
1.3k
views
News:
LAST CALL - 'Introduction to NGS Data Analysis' course in Berlin, October 8-10 2018
NGS
training
DNA-Seq
RNA-Seq
News
4.7 years ago by
David Langenberger
9.8k
1
vote
5
replies
585
views
News:
Cancer Genomics course - 2 seats left
Genomics
Cancer-Genomics
R
updated 2 days ago by
Ram
37k • written 28 days ago by
carlopecoraro2
★ 2.2k
4
votes
5
replies
2.4k
views
News:
Kover will provide support via Biostars
kover
kmer
machine learning
news
News
updated 6.1 years ago by
hfan22
▴ 40 • written 6.7 years ago by
Alexandre Drouin
▴ 90
9
votes
5
replies
3.2k
views
News:
SAMTOOLS 1.4 released
samtools
News
5.9 years ago by
Pierre Lindenbaum
152k
0
votes
5
replies
2.3k
views
News:
Workshop: Data manipulation and visualization with Python
next-gen
sequence
genome
SNP
News
6.2 years ago by
carlopecoraro2
★ 2.2k
14
votes
5
replies
3.0k
views
News:
Science Article On Social Influence Bias On Voting Patterns ("Herding") With Impact On Biostar.
biostar
meta
News
updated 9.5 years ago by
Mary
11k • written 9.5 years ago by
Michael Dondrup
52k
6
votes
5
replies
4.7k
views
News:
NCBI MagicBlast ( Short read mapper )
ncbi
blast
hts
mapper
shortread
News
6.4 years ago by
Pierre Lindenbaum
152k
9
votes
5
replies
2.7k
views
News:
The NIH Software Discovery Index | We invite your comments
NIH
software-catalog
updated 12 months ago by
Ram
37k • written 8.3 years ago by
Sean Davis
26k
33
votes
5
replies
3.3k
views
News:
FINAL CALL: Epigenetics Workshop - DNA Methylation Data Analysis (some last seats available)
Workshop
Epigenetics
Bisulfite Sequencing
News
updated 6.3 years ago by
David Langenberger
9.8k • written 6.7 years ago by
Adele Feuerstein
▴ 460
9
votes
5
replies
9.5k
views
8 follow
News:
Online course: Learn Bioinformatics in 100 hours
online course
biostar
News
updated 5.4 years ago by
lucilepain
• 0 • written 5.5 years ago by
Istvan Albert
96k
0
votes
5
replies
1.7k
views
News:
Ashg 2012 Biostar Meetup
News
updated 10.3 years ago by
Istvan Albert
96k • written 10.3 years ago by
Zev.Kronenberg
12k
3
votes
5
replies
1.9k
views
News:
Published: GeneSCF: a real-time based functional enrichment tool with support for multiple organisms
tool
kegg
geneontology
cancer
geneenrichment
News
updated 6.4 years ago by
Mike
★ 1.8k • written 6.4 years ago by
EagleEye
7.4k
9
votes
5
replies
8.1k
views
News:
A New Rest Based Api For Kegg: Kyoto Encyclopedia Of Genes And Genomes
kegg
api
News
updated 10.2 years ago by
Manu Prestat
4.1k • written 10.2 years ago by
wchknudt
▴ 50
7
votes
5
replies
2.2k
views
News:
Physalia-Course: Introduction to Linux and workflows for biologists (Berlin)
Assembly
next-gen
alignment
Unix
News
5.9 years ago by
carlopecoraro2
★ 2.2k
9
votes
4
replies
1.2k
views
News:
Human Cell Atlas Data Coordination Platform Data Release Questionaire
RNA-Seq
News
4.9 years ago by
Laura
★ 1.8k
3
votes
4
replies
2.0k
views
News:
Training in Metagenomics Data Analysis @NIH, USA, Nov 14 - 17, 2017
metagenomics
training
microbiome
News
5.3 years ago by
AABI
▴ 130
14
votes
4
replies
3.0k
views
News:
FULL: NGS Data Analysis Workshop for Beginners in Munich (29 June - 1 Juli 2016)
RNA-Seq
next-gen
NGS
updated 6 months ago by
Ram
37k • written 7.0 years ago by
David Langenberger
9.8k
6
votes
4
replies
767
views
News:
Upcoming online training courses
Python
R
18 months ago by
carlopecoraro2
★ 2.2k
3
votes
4
replies
1.7k
views
News:
OmicCircos was updated
R
OmicCircos
updated 8 months ago by
Ram
37k • written 7.9 years ago by
yhu
▴ 50
0
votes
4
replies
757
views
News:
Pan-Structural Variation hackathon in the Cloud!
sequencing
SV
Forum
News
2.9 years ago by
Medhat
9.5k
7
votes
4
replies
2.4k
views
News:
Boston Ma Us Area Folks: Software Carpentry Workshop For Women In Science Coming Up
python
training
News
updated 9.3 years ago by
marksimon112
• 0 • written 9.8 years ago by
Mary
11k
4
votes
4
replies
1.4k
views
News:
VCFclin working group
vcfclin
News
8.8 years ago by
keilbeck
▴ 30
10
votes
4
replies
1.4k
views
News:
3rd Berlin Summer School in NGS Data Analysis (2 seats just became available)
NGS
RNA-Seq
DNA-Seq
News
4.0 years ago by
David Langenberger
9.8k
1
vote
4
replies
1.4k
views
News:
Bioconductor Development Visualization
bioconductor
updated 7 months ago by
Ram
37k • written 7.8 years ago by
Sean Davis
26k
4
votes
4
replies
1.5k
views
News:
12th International Conference on Advancements in Bioinformatics and Drug Discovery
genome
bioinformatics
Computational Biology
News
updated 4.3 years ago by
cdsouthan
★ 1.9k • written 4.8 years ago by
bioinformatics
▴ 20
1
vote
4
replies
1.7k
views
News:
webserver of TCGA data www.tcgaportal.org
RNA-Seq
gene
rna-seq
genome
News
4.7 years ago by
xushutan
▴ 40
9
votes
4
replies
3.3k
views
News:
Conference Announcement - Camda 2013
conference
classification
News
10.0 years ago by
okko.clevert
▴ 240
4
votes
4
replies
2.6k
views
News:
Join The Dnanexus Developer Program
cloud
api
News
9.6 years ago by
akislyuk
▴ 30
2
votes
4
replies
1.1k
views
News:
Online training - Snakemake: Reproducible and Scalable Bioinformatic Workflows
Snakemake
Pipeline
14 months ago by
carlopecoraro2
★ 2.2k
0
votes
4
replies
1.7k
views
News:
What NGS courses would you like us to prepare for 2016? (one week left)
NGS
Survey
Workshop
updated 6 months ago by
Ram
37k • written 7.2 years ago by
David Langenberger
9.8k
2
votes
4
replies
1.7k
views
News:
Reminder: Igb Tutorial Starts In 30 Minutes
rnaseq
rna-seq
genome-browser
visualization
News
9.4 years ago by
Ann
★ 2.3k
6
votes
4
replies
1.3k
views
News:
Genomic variation course at the EBI - Updated
variation
1000 Genomes
Ensembl
snps
News
6.7 years ago by
Emily
23k
1
vote
4
replies
1.2k
views
News:
Spring School for RNA-seq Sequence Analysis
RNA
RNA-Seq
genome
sequencing
sequence
News
updated 6.0 years ago by
rachelrodgers12
▴ 10 • written 6.0 years ago by
scientificcomputingismms
▴ 10
2
votes
4
replies
866
views
News:
Course ONLINE - RNAseq data analysis with R and Bioconductor (15-19 June)
rna-seq
R
Bioconductor
News
updated 2.7 years ago by
lessismore
★ 1.3k • written 2.7 years ago by
carlopecoraro2
★ 2.2k
15
votes
4
replies
2.2k
views
News:
Call For Nominations: 2013 Benjamin Franklin Award
News
updated 9.9 years ago by
lh3
33k • written 10.0 years ago by
Pierre Lindenbaum
152k
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Recent Replies
Comment: PLINK2 selecting variants based on INFO score
by
chrchang523
9.9k
If you aren't willing to provide more precise information than this, sufficient for a reader to reproduce what you're seeing, I will delete…
Answer: Error while trying to install salmon
by
Chris
▴ 10
Donwloading the package from conda (https://anaconda.org/conda-forge/boost/files?version=1.60.0) worked for me wget https://anaconda.org/…
Answer: finding error to run edgeR, error in ploting MDS and after that in model matrix
by
Gordon Smyth
★ 5.4k
First issue is that GEO series matrix files can't be read using `read.delim`. Second issue is the data are from Agilent microarrays and …
Comment: PLINK2 selecting variants based on INFO score
by
m.c.roozen
• 0
I have tried that (the .pvar file contains the "1:10586" form as ID which I mentioned above) which leads to the same output as above, 0 var…
Answer: samtools markdup in Rsamtools
by
joe
▴ 350
You can run any system command from inside R using `system()`. This works well if there is a single command without many dependencies. For …
Comment: samtools markdup in Rsamtools
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152k
> But other solutions are also fine: bash, nextflow, snakemake
Answer: samtools markdup in Rsamtools
by
ATpoint
68k
My honest opinion: Do processing of sequencing data on the standard command line with samtools. There is no need for the added complexity t…
Comment: To batch correct or analyse separately?
by
predeus
★ 1.8k
Another great and up-to-date resource is this: https://www.sc-best-practices.org/preamble.html
Comment: PLINK2 selecting variants based on INFO score
by
chrchang523
9.9k
The --exclude file must use the same variant IDs as your .pvar file. You should elaborate on what seemed to go wrong when you tried to arr…
Comment: phylogeny
by
炫
• 0
Hello, my problem is the same as yours, did you finally solve this problem?
Comment: phylogeny
by
炫
• 0
您好,我的问题和您的一模一样,请问您这个问题最终解决了吗
Comment: Issue with hmmcalibrate during tutorial.
by
apcreyes29
• 0
If that's the case then I'll just proceed then. Thank you!
Answer: To batch correct or analyse separately?
by
ATpoint
68k
Instead of writing that all down I recommend to read the relevant part of the Bioconductor scRNA-seq book (OSCA) which covers the "how's" a…
Answer: Issue with hmmcalibrate during tutorial.
by
Mensur Dlakic
★ 22k
Pretty sure that `hmmcalibrate` does not exist in HMMer version 3+ as the models are internally calibrated. I think you are using a manual …
Comment: High downstream gene expression
by
yoser4
▴ 10
Thank you for your reply. Your answer has helped me. I am a novice in scientific research, and the reading of literature is really poor. …
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