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897 results • Page 2 of 18
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News: Exponential growth of data in biomedicine needs a skilled and experienced workforce
R biotech gene RNA-Seq
updated 11 months ago by 43k • written 6.8 years ago by ▴ 70
1
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2
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1.0k
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News: Sage Bionetworks is seeking researchers and data scientists to participate in software user research!
research software
updated 11 months ago by 43k • written 5.2 years ago by ▴ 30
0
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2
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918
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News: The Practice of RADseq: Population Genomics Analysis with Stacks (RADS02) Early bird deadline approaching - 20th September
population-genomics radseq stacks
updated 7 months ago by ★ 1.7k • written 7 months ago by ▴ 110
3
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2
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550
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News: Announcement: Research Topic "Mechanistic, Machine Learning and Hybrid Models of the 'Other' Endocrine Regulatory Systems in Health and Disease", Vol…
mathematical-modelling endocrinology ML systems-biology machine-learning
25 days ago by Johannes W. Dietrich • 0
12
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2
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435
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News: 8th Berlin Summer School in NGS Data Analysis (June 10-14, 2024) - already half booked
Workshop RNA-Seq DNA-Seq Illumina
13 days ago by David Langenberger 11k
1
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2
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1.4k
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News: Webinar on Diagnosis of Rare Diseases using NGS Based Multi-gene Testing- Case studies by Dr.Aparna Ganapathy on 18 Apr 2018
variant-calling rare-disease dna-seq strand-ngs
updated 11 months ago by 43k • written 6.1 years ago by ▴ 70
3
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2
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1.3k
views
News: Genome Informatics meeting software list
meetings genomics informatics software
updated 11 months ago by 43k • written 6.5 years ago by 26k
5
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2
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919
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News: The precisionFDA BioCompute Object App-a-thon has been extended to October 18!
BioCompute challenge
updated 10 months ago by 43k • written 4.8 years ago by ▴ 70
8
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2
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2.3k
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News: The bioinformatics chat is a new podcast about bioinformatics. In the first episode we discuss Scallop, a transcriptome assembler
podcast Assembly RNA-Seq
updated 11 months ago by 43k • written 7.0 years ago by ▴ 120
3
votes
2
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683
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News: Participate in a NCBI/NIAID Virtual Codeathon: VCF Files for Population Genomics, Jul 31 - Aug 4, 2023
VCF SARS-CoV-2 NCBI Codeathon
11 months ago by PeterC_NCBI ▴ 410
4
votes
2
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590
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News: Standalone NCBI ClusteredNR database now available for download
ClusteredNR NCBI standalone BLAST
7 months ago by PeterC_NCBI ▴ 410
1
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2
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2.4k
views
News: Workshop: Metagenomics, Metatranscriptomics, and multi'omics for microbial community studies (9-13 April 2018 in Berlin)
Metatranscriptomics Metagenomics
updated 11 months ago by 43k • written 6.2 years ago by ★ 2.5k
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2
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1.8k
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News: Course: Applied Statistics and Bioinformatics with R and Bioconductor
Statistics R Metagenomics Bioconductor
updated 11 months ago by 43k • written 6.8 years ago by ★ 2.5k
0
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2
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2.0k
views
News: Illumina iSeq 100 sequencer
firefly illumina iSeq100
updated 11 months ago by 43k • written 6.3 years ago by 141k
5
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2
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1.5k
views
News: Google Dataset Search
google
updated 11 months ago by 43k • written 5.6 years ago by 161k
0
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2
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1.0k
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News: Training - Introduction to Deep Learning
Deep-Learning Machine-Learning Python-Programming
updated 10 months ago by 43k • written 3.8 years ago by ★ 2.5k
0
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2
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2.1k
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News: RNA-Seq Data Analysis Workshop in Berlin, Germany (13 - 16 March 2018)
NGS RNA-Seq sequencing
updated 11 months ago by 43k • written 6.3 years ago by 11k
0
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2
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1.4k
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News: Webinar on fast and accurate DNA variant calling on 26 Apr 2017
variant-calling SNP gatk strand-ngs alignment
updated 11 months ago by 43k • written 7.0 years ago by ▴ 70
5
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2
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1.7k
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News: #scRNABIO & organoids meeting
single-cell-sequencing microfluidics organoids
updated 11 months ago by 43k • written 5.7 years ago by ▴ 320
1
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2
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756
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News: Ensembl reduced functionality, early March
ensembl
updated 10 months ago by 43k • written 4.3 years ago by 23k
6
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2
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2.1k
views
News: RNA-Seq Data Analysis Workshop in Leipzig, Germany (09 - 12 October 2017)
NGS RNA-Seq workshop
updated 11 months ago by 43k • written 6.8 years ago by 11k
8
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2
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761
views
News: FINAL CALL - Single-Cell RNA-Seq Data Analysis: A Practical Introduction (May 6-8, 2024 in Berlin)
single-cell sequencing
18 days ago by David Langenberger 11k
0
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2
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207
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News: NGS & Microarray Custom Data Analysis Training Program
snp RNA-Seq next-gen-sequencing ChIP-Seq
updated 10 months ago by 43k • written 4.8 years ago by • 0
13
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2
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1.5k
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News: Thank you Biostars!
meta
updated 10 months ago by 43k • written 5.0 years ago by ▴ 140
2
votes
2
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1.6k
views
News: User-friendly Bioinformatics From RNA Seq to Biological Interpretation
machine-learning RNA-seq
updated 11 months ago by 43k • written 5.8 years ago by ▴ 10
0
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2
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1.2k
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News: 20% Off - Next-Generation Sequencing Data Analysis: A Practical Introduction (May 3-5, 2023 in Munich, Germany)
NGS DNA-Seq variant-calling RNA-Seq workshop
12 months ago by David Langenberger 11k
2
votes
2
replies
515
views
News: Unix and Shell Scripting for Bioinformatics course
Bash Unix Shell-Scripting
4 months ago by carlopecoraro2 ★ 2.5k
1
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2
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1.7k
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News: NCBI Datasets - try it out!
Assembly refseq genome ncbi
updated 10 months ago by 43k • written 4.1 years ago by ★ 3.7k
0
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2
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News: PART FUNDED SCHOLARSHIPS - Coding, data management, and Shiny applications using RStudio for evolutionary biologists and ecologists - May 2017
Rstudio R Shiny
updated 11 months ago by 43k • written 7.0 years ago by ▴ 110
0
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2
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1.9k
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News: Webinar: Multi-omics: Challenges, opportunities and application to biomarker discovery
biomarker next-gen-sequencing multiomics cancer
updated 11 months ago by 43k • written 6.8 years ago by ▴ 750
3
votes
2
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732
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News: NCBI BLAST+ 2.14.1 Now Available
NCBI BLAST
8 months ago by PeterC_NCBI ▴ 410
0
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2
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3.4k
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News: Course: Practical GWAS using Linux and R. 23-27 October 2017, Berlin (Germany)
GWAS Linux R
updated 11 months ago by 43k • written 6.7 years ago by ★ 2.5k
2
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2
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1.4k
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News: Course: Applied Statistics and Bioinformatics with R and Bioconductor. (Berlin, 22-26 January 2018)
R next-gen-sequencing
updated 11 months ago by 43k • written 6.4 years ago by ★ 2.5k
0
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2
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1.7k
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News: 2 Days Hands on Workshop on Transcriptome-Seq Data Analysis
RNA-Seq sequencing SNP Assembly
updated 11 months ago by 43k • written 6.9 years ago by • 0
2
votes
2
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940
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News: Interested in Machine Learning?
deep-learning machine-learning
updated 10 months ago by 43k • written 5.0 years ago by ★ 2.5k
1
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2
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1.7k
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News: Workshop: Data analysis in high throughput biology. deadline today (2 places left)
next-gen R RNA-Seq
updated 11 months ago by 43k • written 7.0 years ago by ★ 2.5k
6
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2
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1.1k
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News: Temporarily reduced functionality of Ensembl and Ensembl Genomes
Ensembl
updated 11 months ago by 43k • written 5.2 years ago by ★ 2.4k
3
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2
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1.2k
views
News: Course "Data Crunching: from hell to heaven", Udine, Italy, 25-27 July, 2018
NGS next-generation-sequencing
updated 11 months ago by 43k • written 5.9 years ago by ★ 3.0k
3
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2
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1.0k
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News: BETA Testing Opportunity for new RNA-seq data analysis tool
beta-testing RNA-seq multi-omics ngs
updated 11 months ago by 43k • written 5.3 years ago by • 0
2
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2
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2.6k
views
News: Interview Dealing with RADseq data: some tips from our instructors
NGS RADseq
updated 11 months ago by 43k • written 6.5 years ago by ★ 2.5k
0
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2
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687
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News: Reduced functionality of Ensembl and Ensembl Genomes on the 13th November
ensembl
updated 10 months ago by 43k • written 4.5 years ago by 23k
1
vote
2
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1.7k
views
News: Webinar: Generating interpretable maps of single cell chromatin accessibility and RNA-seq datasets with Similarity Weighted Nonnegative Embedding
scRNAseq webinar rna-seq single-cell
updated 10 months ago by 43k • written 5.0 years ago by ▴ 580
7
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2
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1.1k
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News: NGS Data Analysis Workshops 2024
scRNA-seq dna-seq rna-seq nextflow
3 months ago by David Langenberger 11k
4
votes
2
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2.9k
views
News: New ebook: From cell line to Command line to learn computational biology
unix snakemake computational-biology RNA-seq
5 months ago by Ming Tommy Tang ★ 3.9k
2
votes
2
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1.4k
views
News: GeNets: a unified web platform for network-based genomic analyses
networks pathways RNA-Seq visualization
updated 11 months ago by 43k • written 5.9 years ago by ★ 5.2k
4
votes
2
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1.3k
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News: Hands-On Workshop: How to use bisulfite-treated sequencing to study DNA methylation (BS-Seq, Bisulfite-Seq, WGBS)
Workshop methylation bisulfite
updated 10 months ago by 43k • written 4.6 years ago by ★ 1.0k
0
votes
1
reply
786
views
News: Advanced R Programming Course
R
updated 11 months ago by 43k • written 6.0 years ago by ★ 2.5k
0
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1
reply
1.3k
views
News: Squeezing biology out of statistics: Gene set and pathway analysis in HT data. Berlin, 11-15 March
R RNA-Seq next-gen ChIP-Seq
updated 11 months ago by 43k • written 5.3 years ago by ★ 2.5k
0
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1
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646
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News: International Conference on Renewable & Non-Renewable Energy
next-gen
updated 11 months ago by 43k • written 5.9 years ago by • 0
1
vote
1
reply
1.9k
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News: Bioinformatics Contest 2017. Results
contest
updated 11 months ago by 43k • written 7.1 years ago by ▴ 70
897 results • Page 2 of 18
Recent Votes
Comment: Ideal PC configurations and operating system for bioinformatics laboratory
RNA-seq power estimation using ssizeRNA program
Answer: WGCNA preservation analysis
Comment: Ideal PC configurations and operating system for bioinformatics laboratory
ISCN annotation for SV/CN VCF files
Comment: How to convert plink files to Hapmap Format
Am I crazy, or are most published RNA-seq studies vastly underpowered?
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Popular Question to AdviceSeeker • 0
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Recent Replies
Comment: Ideal PC configurations and operating system for bioinformatics laboratory by GenoMax 141k
> What specifications and operating system would be ideal for my case? For choice of OS: Linux to access the large pool of open source sof…
Comment: How to convert plink files to Hapmap Format by bk11 ★ 2.3k
Ok. First update your phenotypes because in the 6th column all the values are -9 meaning missing, and then run `--assoc`. You can do the fo…
Comment: Ideal PC configurations and operating system for bioinformatics laboratory by i.sudbery 19k
You'll probably get away with using one of the other analysis pipelines, like Alevin-fry with much less than 128GB of RAM. Workstations can…
Comment: Difference between samtools "-f 9" and "-f 11" by Dylan • 0
> (which is weird, if it's in proper pair, read and its mate should be both mapped) So that was my thought as well, I think the code you l…
Comment: Ideal PC configurations and operating system for bioinformatics laboratory by Ram 43k
> several single cell samples At the same time? You need a server, not a PC. Google around (and search the site as well with keyword "conf…
Answer: Difference between samtools "-f 9" and "-f 11" by Pierre Lindenbaum 161k
9: read must be paired AND mate must be unmapped 11: read must be paired AND mapped in proper pair AND mate must be unmapped (which is w…
Comment: How to convert plink files to Hapmap Format by Sofia • 0
the data is binary and associated with a disease but we're studying only the cases and there are other phenotypes of severity
Comment: Cell barcode whitelists for DNBelab C Series High-throughput Single-cell RNA Ser by atowns21 • 0
could you share an example command of using STARSolo for the alignment? Did you use the json file directly? Or do you have to re-format the…
Comment: How to trim transcripts using information from NCBI contamination screen report by GenoMax 141k
> I didn't do a good job with Trimmomatic for some reason so I have to do some trimming of my transcripts. If you had extraneous sequence…
Comment: How to convert plink files to Hapmap Format by bk11 ★ 2.3k
Please answer my above question. What type of data is it, binary (cases and controls) or quantitative? You need to update Phenotype info in…
Comment: How to convert plink files to Hapmap Format by Sofia • 0
This is how my .fam file looks like ![enter image description here][1] [1]: /media/images/caccd97c-3606-48d2-aa32-423a9882 And I run …
Comment: How to convert plink files to Hapmap Format by bk11 ★ 2.3k
What type of phenotype is in your data? It looks like it does not have affection status (default values for affection status will be: 1 = u…
Comment: Redirection of Duplicate PMIDs by LauferVA 4.2k
Agree. This is also a great solution that flips the problem on its head, as it were, Dominick. I dont want to be preachy, but this is why i…
Answer: Redirection of Duplicate PMIDs by GenoMax 141k
> linked to a list of grants Using [**EntrezDirect**][1] this may be much simpler if you have the grant number available. I tested this w…
Answer: Redirection of Duplicate PMIDs by LauferVA 4.2k
Hi Dominick, One thing I am not sure of is, how is it that you got the other PMID in the first place? The reason I ask is that you mentio…
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