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News: GWAS course
GWAS R
updated 6 months ago by 41k • written 6 months ago by ★ 2.4k
0
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0
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396
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News: Course - RNAseq data analysis with R/Bioconductor
R Tidyverse RNA-seq Bioconductor
updated 4 months ago by 41k • written 6 months ago by ★ 2.4k
0
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0
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359
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News: Course - Multiplex imagine analysis/ Spatial Omics
Multiplex-Image-Analysis Spatial-Omics
updated 6 months ago by 41k • written 6 months ago by ★ 2.4k
3
votes
3
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979
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News: NCBI's IgBLAST version 1.21.0 is now available
IgBLAST BLAST T-Cell NCBI receptors
6 months ago by PeterC_NCBI ▴ 370
0
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0
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281
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News: course- Population genomic inference from low-coverage whole-genome sequencing data
Whole-Genome-Sequencing Population-Genomics
updated 7 months ago by 41k • written 7 months ago by ★ 2.4k
0
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0
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307
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News: PROGRAMMING IN R : MOVING FROM BEGINNER TO ADVANCED
Programming Training R
7 months ago by carlopecoraro2 ★ 2.4k
1
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0
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684
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News: NCBI BLAST+ 2.14.0 release includes faster protein and translation search options
NCBI BLAST
7 months ago by PeterC_NCBI ▴ 370
0
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0
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393
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News: Get Your Science going in 10 Minutes with the Biostar Handbook!
education biostarhandbook
updated 7 months ago by 41k • written 7 months ago by 99k
0
votes
0
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317
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News: Course - Network Analysis in Systems Biology with R/Bioconductor
R Network-Analysis Bioconductor Systems-Biology
updated 6 months ago by 41k • written 7 months ago by ★ 2.4k
0
votes
0
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344
views
News: Course - Phylogenetic Comparative Methods in R
Comparative-Methods R Phylogenetics
updated 6 months ago by 41k • written 7 months ago by ★ 2.4k
0
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2
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1.0k
views
News: 20% Off - Next-Generation Sequencing Data Analysis: A Practical Introduction (May 3-5, 2023 in Munich, Germany)
NGS DNA-Seq variant-calling RNA-Seq workshop
7 months ago by David Langenberger 10k
1
vote
0
replies
371
views
News: Course - Statistics for biologists with R
Statistics R
7 months ago by carlopecoraro2 ★ 2.4k
0
votes
0
replies
405
views
News: GWAS course in June
GWAS
updated 7 months ago by 41k • written 7 months ago by ★ 2.4k
1
vote
1
reply
569
views
News: 20% Off - Bioinformatics Pipeline Development with Nextflow (May 15-17 in Leipzig, Germany)
NGS nextflow RNAseq pipelines DNAseq
7 months ago by David Langenberger 10k
0
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0
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380
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News: Single-cell RNAseq with R/Bioconductor course
scRNAseq Bioconductor R
updated 7 months ago by 41k • written 7 months ago by ★ 2.4k
0
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0
replies
295
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News: Environmental Metagenomics - 17-21 April
MAGs Metagenomics
updated 7 months ago by 41k • written 7 months ago by ★ 2.4k
1
vote
0
replies
367
views
News: Announcing the 3rd round of the Nextflow and nf-core mentorship
nf-core mentorship nf_core nextflow
updated 8 months ago by 41k • written 8 months ago by ▴ 450
1
vote
0
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363
views
News: New open access publication on ElasticBLAST in BMC Bioinformatics
NCBI ElasticBLAST BLAST
8 months ago by PeterC_NCBI ▴ 370
0
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0
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370
views
News: Pangenomics course in April!
Pangenomics Prokaryotic-Genomics
8 months ago by carlopecoraro2 ★ 2.4k
1
vote
0
replies
493
views
News: Talk from Aaron Lun on Orchestrating Single-Cell Analysis With Bioconductor
scrna-seq
updated 8 months ago by 41k • written 8 months ago by 78k
0
votes
0
replies
368
views
News: Cellosaurus release 45 is available
knowledgebase cell-line
updated 5 months ago by 41k • written 8 months ago by ▴ 110
0
votes
0
replies
320
views
News: Virtual RAD-seq Analysis Workshop!
workshops popgen genomics rad-seq
8 months ago by mia.nahom ▴ 10
0
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0
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646
views
News: The Canadian Bioinformatics Workshops are back for summer 2023
CBW training workshop
8 months ago by bioinformatics.ca • 0
0
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0
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342
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News: ISMB-affiliated virtual tutorial on Neo4j/Cypher for life sciences
neo4j cypher graph knowledge
8 months ago by Stephen • 0
0
votes
0
replies
399
views
News: Announcing workshop on Declarative Programming in Biology and Medicine (Seattle, Sept. 2023)
medicine declmed declarative icfp precision
8 months ago by Stephen • 0
0
votes
0
replies
346
views
News: Course live online Introduction to Bayesian Analyses using R, May 8th-12th, 2023
bayesian RProject course online
8 months ago by Sole • 0
0
votes
0
replies
346
views
News: course - Reproducibility in Bioinformatics
Docker Reproducibility
updated 8 months ago by 41k • written 8 months ago by ★ 2.4k
0
votes
2
replies
726
views
News: Course - Metagenomics, metatranscriptomics, and multi'omics for microbial community Studies
Metagenomics Metatranscriptomics Multiomics
updated 8 months ago by 41k • written 8 months ago by ★ 2.4k
10
votes
4
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1.1k
views
News: RNA-Seq Data Analysis Workshop - Join us in Berlin, Germany from March 27-30, 2023!
NGS transcriptomics workshop
updated 8 months ago by ▴ 30 • written 10 months ago by 10k
1
vote
0
replies
818
views
News: Summer School in Bioinformatics
Genomics Docker RNA-seq
updated 8 months ago by 41k • written 8 months ago by ★ 2.4k
1
vote
1
reply
564
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News: Sign-ups for the St. Jude KIDS23 BioHackathon (May 3-5th) open through March 15th!
stjude hackathon
8 months ago by jared.andrews07 ★ 16k
1
vote
0
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374
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News: Course - BIOINFORMATIC ANALYSIS OF TRANSPOSABLE ELEMENTS
Transposable-Elements TE Genome-Assembly
updated 8 months ago by 41k • written 8 months ago by ★ 2.4k
0
votes
0
replies
351
views
News: Environmental Metagenomics course
Environmental-Metagenomics
updated 9 months ago by 41k • written 9 months ago by ★ 2.4k
0
votes
0
replies
343
views
News: Course - GENERALIZED LINEAR MODELS in R
GLM R Generalised-Linear-Model
updated 6 months ago by 41k • written 9 months ago by ★ 2.4k
1
vote
0
replies
403
views
News: Virtual Single Cell RNA-seq Workshop
single genomics cell expression rna-seq workshop gene
9 months ago by mia.nahom ▴ 10
1
vote
0
replies
376
views
News: Advanced Bayesian statistics in R course
Statistics RegressionModeling Bayesian R
9 months ago by carlopecoraro2 ★ 2.4k
0
votes
0
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312
views
News: Course - INTRODUCTION TO THE ANALYSIS OF LONGITUDINAL DATA WITH R
Genomics LongitudinalData R
9 months ago by carlopecoraro2 ★ 2.4k
1
vote
0
replies
750
views
News: The GDC Legacy Archive is retiring soon.
genomic-data-commons tcga gdc
updated 9 months ago by 41k • written 9 months ago by ★ 1.1k
0
votes
0
replies
372
views
News: course MULTIVARIATE DATA ANALYSIS WITH R AND VEGAN
Vegan MULTIVARIATEDATAANALYSIS Statistics R
9 months ago by carlopecoraro2 ★ 2.4k
0
votes
0
replies
328
views
News: course - single-cell RNAseq with R/Bioconductor
Bioconductor single-cell genomics RNAseq
updated 9 months ago by 41k • written 9 months ago by ★ 2.4k
0
votes
0
replies
475
views
News: Course - Analysis of PROKARYOTIC PANGENOMES
Genomics Pangenomes
updated 9 months ago by 41k • written 9 months ago by ★ 2.4k
5
votes
3
replies
757
views
News: March 13-16: Virtual Nextflow and nf-core training event in 5 languages
nf-core pipeline Nextflow
updated 8 months ago by ▴ 330 • written 9 months ago by 4.2k
0
votes
1
reply
326
views
News: Courses in March. -still a few seats available
Bioconductor Genomics R
updated 9 months ago by 41k • written 9 months ago by ★ 2.4k
0
votes
0
replies
324
views
News: course - Next steps in applied Bayesian regression modeling
Statistics RegressionModeling Bayesian R
9 months ago by carlopecoraro2 ★ 2.4k
0
votes
0
replies
418
views
News: Introduction to GWAS course in June
GWAS R
updated 9 months ago by 41k • written 9 months ago by ★ 2.4k
0
votes
0
replies
669
views
News: Introduction to GWAS course (6th edition) - June, 5th-8th
GWAS R
updated 10 months ago by 41k • written 10 months ago by ★ 2.4k
0
votes
0
replies
298
views
News: Course - Version Control for Researchers
VersionControl GIT Github
10 months ago by carlopecoraro2 ★ 2.4k
0
votes
0
replies
443
views
News: Course - INTRODUCTION TO PYTHON PROGRAMMING FOR BIOLOGISTS
Programming Python
updated 10 months ago by 41k • written 10 months ago by ★ 2.4k
0
votes
0
replies
334
views
News: Eukaryotic Metabarcoding course
eDNA Metabarcoding
updated 10 months ago by 41k • written 10 months ago by ★ 2.4k
0
votes
3
replies
695
views
News: NCBI update complete. Aspera users please update your client.
NCBI Submissions GenBank
10 months ago by PeterC_NCBI ▴ 370
1,000 results • Page 3 of 20
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Answer: Execute R command on specific termimal
Answer: Where can I get a list of SNPs mapping overlapping genes in humans?
Comment: How do I know how much memory to use when piping to with BBMap suite (OutOfMemor
A: difference between GSEA and Gene Ontology
Answer: Does the Minion demultiplex when basecalling?
the difference between the positions called by somatic caller (MuTect2) and the position called by germline caller (UnifiedGenotyper)?
A: Extract somatic mutations and germline mutations from variant calling files?
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Popular Question to samreen.jasvi • 0
Teacher to h.mon 35k
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Comment: Resolving over clustered NGS with Q-scores by sam.himes92 • 0
The system that we used was [Aviti][1]. Our sequencing core was the one who quantified the loading/library concentration. Sorry I don't hav…
Comment: Where can I get a list of SNPs mapping overlapping genes in humans? by Alex Reynolds 35k
I modified the answer with an approach for that use case.
Comment: Where can I get a list of SNPs mapping overlapping genes in humans? by Ram 41k
OP is looking for overlapping genes - genes with presumably different gene IDs that share some loci. I think the `genes.bed` creation logic…
Comment: Where can I get a list of SNPs mapping overlapping genes in humans? by Alex Reynolds 35k
Note: The file `snps.bed` will be very large. You'll need sufficient disk space for this step.
Answer: Where can I get a list of SNPs mapping overlapping genes in humans? by Alex Reynolds 35k
Given files `genes.bed` and `snps.bed`, you could do something like: ``` $ bedmap --echo --echo-map-id --delim '\t' genes.bed snps.bed > a…
Answer: How to add exon annotations to genome annotation by alex.zaccaron ▴ 380
You can use [AGAT][1] to process your annotation file to add the missing exons. I believe `agat_convert_sp_gxf2gxf.pl -g no_exons.gff -o wi…
Comment: Annotation Visualization IGV by Pierre Lindenbaum 158k
and you got answer that should be validate (green tick), or people asked you questions but got no answers.
Comment: Annotation Visualization IGV by awhale01 • 0
Correct I have asked those questions before.
Comment: Annotation Visualization IGV by Pierre Lindenbaum 158k
you asked questions before: review, comment and/or validate them please: https://www.biostars.org/p/9530777/ ; https://www.biostars.org/p/9…
Comment: Ambient RNA removal method that generates whole (integer) counts by EK • 0
Thanks, Jared. Sounds like rounding counts is the simplest approach for now. :)
Comment: Resolving over clustered NGS with Q-scores by Trivas ★ 1.5k
Could you tell us which sequencer you used, how you quantified your library size and concentration, and what your loading concentration was…
Comment: Resolving over clustered NGS with Q-scores by sam.himes92 • 0
I should have mentioned, we ran both Read 1 and 2 well past the points of interest. For each read we ran 75 cycles.
Answer: Resolving over clustered NGS with Q-scores by Trivas ★ 1.5k
It might be because Illumina recommends 26 cycles for Read 1: https://knowledge.illumina.com/instrumentation/general/instrumentation-genera…
Comment: Resolving over clustered NGS with Q-scores by sam.himes92 • 0
Yes at 5%.
Comment: Resolving over clustered NGS with Q-scores by ATpoint 78k
Has phiX been spiked in to increase nucleotide diversity.
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