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News: course: Population Genomic Inference from Low-coverage Whole-genome Sequencing Data
whole-genome genomics population low-coverage sequencing
updated 6 months ago by 21k • written 6 months ago by ★ 2.3k
0
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220
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News: :: FINAL CALL :: RNA-Seq Data Analysis Workshop (October 25 - 28, 2022 in Leipzig, Germany) - 2 seats left
RNA-Seq workshop transcriptomics
6 months ago by David Langenberger 9.9k
0
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0
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204
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News: Getting the most out of R course - last call
ggplot2 R tidyverse
6 months ago by carlopecoraro2 ★ 2.3k
0
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0
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282
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News: The NCTR Indel Calling from Oncopanel Sequencing Data Challenge Winners have been announced!
FDA-challenge
updated 3 months ago by 38k • written 6 months ago by ▴ 10
1
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0
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247
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News: Webinar (free) on Multimodal Single-Cell Data from winner of NeurIPS 2021
ATAC-seq CITE-seq scRNA-seq
6 months ago by Alexander ▴ 70
1
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0
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255
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News: course Reproducible Analysis With R
R Reproducibility analysis Data
6 months ago by carlopecoraro2 ★ 2.3k
0
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0
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280
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News: Virtual Genome Assembly workshop
Genome Workshop assembly Virtual
6 months ago by singh.vijender ▴ 70
10
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4
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628
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News: Good morning
good morning
updated 6 months ago by 97k • written 6 months ago by 85k
6
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7
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2.8k
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News: New in DiffBind: dba.plotProfile() - Peak profiles and profile heatmaps
DiffBind ChIP-seq deepTools visualization ATAC-seq
6 months ago by Rory Stark ★ 1.7k
0
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0
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293
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News: Sex Chromosome Evolution course
course Genomics
updated 3 months ago by 38k • written 6 months ago by ★ 2.3k
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0
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247
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News: Online training - Data visualization in R with ggplot2
Visualization ggplot2 R Data
7 months ago by carlopecoraro2 ★ 2.3k
1
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0
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312
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News: Searching for people who can share experience (give free webinars/discuss) on multimodal single cell data
ATAC-seq CITE-seq scRNA-seq
7 months ago by Alexander ▴ 70
0
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0
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271
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News: Online training - Introduction to Deep Learning for biologists
Python DeepLearning bigdata MachineLearning
7 months ago by carlopecoraro2 ★ 2.3k
0
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0
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413
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News: 2023 EMBL Courses and Conferences
EMBL EMBLMalaria EESImaging
7 months ago by EMBL Events • 0
0
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0
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277
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News: Online training -Getting the most out of R
R Science analysis Data
7 months ago by carlopecoraro2 ★ 2.3k
0
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0
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278
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News: Online training - Cancer Genomics in R
Cancer Genomics R
updated 3 months ago by 38k • written 7 months ago by ★ 2.3k
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0
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265
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News: Online training - DNA methylation in plants and animals
OxfordNanopore DNAMethylation BSseq longreads PacBio
7 months ago by carlopecoraro2 ★ 2.3k
0
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0
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290
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News: 3rd edition of the Analysis of RNA sequencing data with R/Bioconductor course.
RNAseq Bioconductor R
8 months ago by carlopecoraro2 ★ 2.3k
4
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1
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2.1k
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News: 2014 ISCB Wikipedia Article Competition announcement
ISCB competition Wikipedia
written 8.7 years ago by ★ 2.0k
1
vote
2
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569
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News: Online training - Introduction to Nextflow
Bionfirmatics Pipeline Workflow Netflow
7 months ago by carlopecoraro2 ★ 2.3k
4
votes
1
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397
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News: Online Course - A Practical Introduction to NGS Data Analysis (September 26-28, 2022)
workshop ngs data-analysis
updated 8 months ago by 38k • written 8 months ago by 9.9k
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0
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368
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News: Final Call! Tomorrow (7/8) is the Deadline for Phase 1 submissions of the NCTR Indel Calling from Oncopanel Sequencing Data Challenge!
oncopanel indel-calling
updated 3 months ago by 38k • written 8 months ago by ▴ 10
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312
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News: Automate your NGS data analyses and create reproducible/scalable pipelines with NextFlow
pipeline Nextflow automation
8 months ago by David Langenberger 9.9k
0
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1
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725
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News: Hands-On RNA-Seq Data Analysis Workshop in Leipzig, Germany (October 25-28, 2022)
RNA-Seq Transcriptomics NGS Workshop
9 months ago by David Langenberger 9.9k
0
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3
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984
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News: Less Than One Month Remaining until the Submission Deadline for Phase 1 of the NCTR Indel Calling from Oncopanel Sequencing Data Challenge!
oncopanel indel-calling
updated 3 months ago by 38k • written 9 months ago by ▴ 10
0
votes
0
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285
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News: EBI Competency Hub Supporting competency-based training and professional development.
ebi carreer
9 months ago by Pierre Lindenbaum 153k
0
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0
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274
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News: Introduction to Statistics in R for biologists
tydeverse R Statistics
9 months ago by carlopecoraro2 ★ 2.3k
1
vote
0
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281
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News: Data analysis with the Tidyverse in July (18th-21st).
Visualization R Tidyverse data-analysis
updated 8 months ago by 38k • written 9 months ago by ★ 2.3k
1
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0
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264
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News: Use your standard DNA variant caller for SNP calling in Bisulfite-Seq data
bisulfite BS-Seq methylation
9 months ago by David Langenberger 9.9k
0
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0
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321
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News: online training - Data Visualization with Python
Python Data-Visualization
updated 8 months ago by 38k • written 9 months ago by ★ 2.3k
0
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0
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351
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News: Cellosaurus release 42 is available
line cell biocuration knowledgebase database
9 months ago by Amos Bairoch ▴ 110
0
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0
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279
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News: Online course- Reproducibility in Bioinformatics - 11-13 July
Docker Reproducibility
updated 3 months ago by 38k • written 9 months ago by ★ 2.3k
0
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0
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324
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News: Online statistics courses
R statistics
9 months ago by carlopecoraro2 ★ 2.3k
0
votes
1
reply
375
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News: API for accessing SARS-COV-2 genomic data
rpackage sars genomics api covid
updated 9 months ago by 127k • written 9 months ago by • 0
2
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0
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361
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News: UniProt: Annotation of biologically relevant ligands using ChEBI
binding protein site metal uniprot chebi
10 months ago by Elisabeth Gasteiger ★ 2.2k
3
votes
0
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397
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News: Tutorial on SemiBin (metagenonomics binning tool). June 14 - online
metagenomics binning
updated 10 months ago by 127k • written 10 months ago by ▴ 60
0
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0
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261
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News: Nanopore direct RNA Sequencing - online course
Sequencing direct Nanopore RNA
10 months ago by carlopecoraro2 ★ 2.3k
0
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0
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248
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News: ONLINE COURSE - LINEAR MIXED MODELS IN R - September 26th-30th
Models Mixed R
10 months ago by carlopecoraro2 ★ 2.3k
7
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1
reply
458
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News: NGSymposium - Conference in Computational Biology, 23-24.09
ML statistics conference ngschool
10 months ago by kzkedzierska ▴ 290
0
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0
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306
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News: ONLINE course "Population genomic inference from low-coverage whole-genome sequencing data"
lcWGS Genomics Population
10 months ago by carlopecoraro2 ★ 2.3k
0
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0
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302
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News: Online course - Metabarcoding in microbial Ecology
Qiime2 Metabarcoding Microbial-Ecology
updated 3 months ago by 38k • written 10 months ago by ★ 2.3k
3
votes
1
reply
391
views
News: Free web seminars related to small non-coding RNA bioinformatics
smallRNA microRNA
updated 3 months ago by 38k • written 11 months ago by ▴ 60
0
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0
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301
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News: ONLINE COURSE - RADseq data analysis using Stacks
Phylogenomics Population RADseq Genomics Stacks
10 months ago by carlopecoraro2 ★ 2.3k
0
votes
0
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284
views
News: Online course - Developing R/Bioconductor packages for genomics
Bioconductor R
updated 3 months ago by 38k • written 11 months ago by ★ 2.3k
1
vote
0
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413
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News: Phase 1 of the NCTR Indel Calling from Oncopanel Sequencing Data Challenge is now live!
oncopanel indel-calling
updated 3 months ago by 38k • written 11 months ago by ▴ 10
0
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2
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568
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News: ClusteredNR NCBI BLAST database provides faster searches and more informative BLAST results
NCBI BLAST
11 months ago by PeterC_NCBI ▴ 210
0
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0
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215
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News: NCBI poster at Bio-IT World on the new cloud BLAST tool, ElasticBLAST
NCBI BLAST ElasticBLAST
11 months ago by PeterC_NCBI ▴ 210
1
vote
0
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284
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News: DATA ANALYSIS WITH THE TIDYVERSE in July (18th-21st).
tidyverse data R analysis
11 months ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
381
views
News: Introduction to Nextflow course
Nextflow
11 months ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
327
views
News: Online Course - A Practical Introduction to NGS Data Analysis (May 16-18, 2022)
NGS RNA DNA Workshop
11 months ago by David Langenberger 9.9k
1,000 results • Page 3 of 20
Recent Votes
Talk from Aaron Lun on Orchestrating Single-Cell Analysis With Bioconductor
SSPACE for scaffolding
Answer: Snakemake workflow for trimmomatic
Answer: How to remove duplicate reads after ONT basecalling from fastq.gz files
A: Why Chip-seq data cross correlation plot has fragment_lenth cross correlation p
A: Why Chip-seq data cross correlation plot has fragment_lenth cross correlation p
Answer: Getting Intron Positions from Amino Acid Sequences
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Comment: My keys are all ENSEMBL, but R says they are not valid keys for ENSEMBL by rpolicastro 11k
`Org.Mm.eg.db` is the mouse organism database, but your ENSEMBL IDs are for human genes. Mouse ensembl ids start with `ENSMUSG`. You proba…
Comment: Snakemake doesn't recognize output files even though they are created by DdogBoss • 0
Yes, it completed the dry run. What other information do you need?
Comment: LDSC correlation calculate confidence intervals by YL ▴ 10
Based on my personal thought, I think the se from LDSC output probably needs to be transferred using Delta method based on Fisher transform…
Comment: LDSC correlation calculate confidence intervals by YL ▴ 10
Hi, Are you able to find an answer for this? I have the exact question! YL
Answer: Gene duplicate by ATpoint 71k
Use use ensembID_geneName as gene identifier to avoid that. These duplicate names exist as genes so removing them is somewhat not really da…
Comment: Gene duplicate by Ram 38k
> some Ensembl IDs that are the same Please show us some examples.
Comment: R package for functional enrichment and depletion analysis by rpolicastro 11k
What you're describing is a simulation of the hypergeometric test, so if you want an exact solution you could use the function `fora` from …
Comment: How to remove duplicate reads after ONT basecalling from fastq.gz files by Darrenjdd • 0
Perfect! Thank you!
Comment: Why Chip-seq data cross correlation plot has fragment_lenth cross correlation p by Daniel • 0
Hi, I am wondering if you ever got an answer for this question. Also, I am curious why it is true that "All the reads coming from one end…
Answer: how can i filter a sam file from a paf file by Trivas ▴ 750
A quick search shows that `paf2sam` doesn't exist because a `.paf` file doesn't contain the CIGAR strings that `.sam` files have. A work ar…
Comment: What is the major problem with this pipeline of SNPs analysis? by Ram 38k
Please use the formatting bar (especially the `code` option) to present your post better. You can use backticks for inline code (\`text\` b…
Comment: What is the major problem with this pipeline of SNPs analysis? by Pierre Lindenbaum 153k
you can stick to gatk. But, again, using a GVCF without GenotypeGVCF is meaningless
Comment: Getting Intron Positions from Amino Acid Sequences by fafad046 • 0
thank you so so much, it worked! you are an absolute life savior :D
Answer: Getting Intron Positions from Amino Acid Sequences by GenoMax 127k
Using [**EntrezDirect**][1] (truncated because of space): $ esearch -db protein -query NP_001243728.1 | elink -target gene | efetch …
Comment: KEGG analysis in Hordeum by GenoMax 127k
`clusterprofiler`: https://bioconductor.org/packages/devel/bioc/vignettes/clusterProfiler/inst/doc/clusterProfiler.html `geneSCF`: https:/…
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