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News: FINAL CALL - Workshop - Single-Cell RNA-Seq Data Analysis: A Practical Introduction (November 8-10, 2023 in Berlin)
workshop RNA-Seq scRNA-Seq single-cell
6 months ago by David Langenberger 11k
0
votes
1
reply
830
views
News: FINAL CALL: Online Course - A Practical Introduction to NGS Data Analysis - October 23-25, 2023
DNA-seq Workshop RNA-seq
6 months ago by David Langenberger 11k
0
votes
0
replies
407
views
News: Course - Metabolomics in R/Bioconductor
R Data-Analysis Metabolomics Bioconductor
updated 6 months ago by 43k • written 6 months ago by ★ 2.5k
13
votes
9
replies
2.6k
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7 follow
News: Inviting NEW Biostars moderators to join Biostars slack channel
slack moderator
6 months ago by GenoMax 141k
0
votes
0
replies
366
views
News: Cellosaurus release 47 is available
cellosauraus cell-line biocuration knowledgebase
updated 6 months ago by 43k • written 6 months ago by ▴ 120
0
votes
0
replies
328
views
News: Course: Seascape Genomics in R course
R GEA Seascape-Genomics Adaptation-Genomics
updated 6 months ago by 43k • written 6 months ago by ★ 2.5k
0
votes
0
replies
341
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News: Course :MACHINE LEARNING - A HANDS-ON INTRODUCTION IN R
R Statistical-Learning Omics Machine-Learning
updated 6 months ago by 43k • written 6 months ago by ★ 2.5k
0
votes
0
replies
460
views
News: Course - Gene Set Enrichment Analysis in R/Bioconductor
Gene-Set-Enrichment-Analysis GSEA R Genomics Bioconductor
updated 6 months ago by 43k • written 6 months ago by ★ 2.5k
0
votes
0
replies
353
views
News: New NCBI Datasets APIs to Replace Old Ones
NCBI API Datasets
6 months ago by PeterC_NCBI ▴ 410
0
votes
0
replies
388
views
News: RADseq data analysis course
RADseq Phylogenomics Stacks Population-Genomics
6 months ago by carlopecoraro2 ★ 2.5k
0
votes
1
reply
611
views
News: EMBL-EBI virtual course | Introduction to RNA-seq and functional interpretation
RNA-seq
updated 7 months ago by 43k • written 7 months ago by • 0
1
vote
0
replies
404
views
News: Online Training - Bioinformatics Pipeline Development with Nextflow (November 15-17, 2023)
nextflow automation pipeline development
7 months ago by David Langenberger 11k
2
votes
1
reply
457
views
News: Successful NCBI NIAID Codeathon on VCF Files in SARS-CoV-2 Genomics
NCBI Codeathon
updated 6 months ago by 10k • written 7 months ago by ▴ 410
0
votes
0
replies
359
views
News: Research Breakthrough in Identifying Viral Escape Mutations for Improved Therapeutic Design
sequence-analysis sars-cov-2 spike-protein
updated 7 months ago by 43k • written 7 months ago by • 0
0
votes
0
replies
343
views
News: Course: Data Manipulation and Visualisation with Python
Python Data-Visualization Data-Manipulation
updated 7 months ago by 43k • written 7 months ago by ★ 2.5k
0
votes
2
replies
916
views
News: The Practice of RADseq: Population Genomics Analysis with Stacks (RADS02) Early bird deadline approaching - 20th September
population-genomics radseq stacks
updated 7 months ago by ★ 1.7k • written 7 months ago by ▴ 110
0
votes
0
replies
341
views
News: Course - GLMMs in R
GLMM Mixed-Models
updated 7 months ago by 43k • written 7 months ago by ★ 2.5k
0
votes
0
replies
351
views
News: Introduction to Nextflow (2 seats left)
Nextflow Workflow Reproducibility
updated 7 months ago by 43k • written 7 months ago by ★ 2.5k
0
votes
0
replies
408
views
News: Genomic Prediction course
Genomic-Prediction GWAS
updated 6 months ago by 43k • written 7 months ago by ★ 2.5k
0
votes
0
replies
443
views
News: course - Population Genomics Using Ancient DNA Data
Genomics aDNA Population-Genomics
updated 6 months ago by 43k • written 7 months ago by ★ 2.5k
3
votes
5
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1.3k
views
News: Ensembl Release 104 and newer GTF files no longer have genes sorted by position
Ensembl GTF
updated 7 months ago by ▴ 120 • written 17 months ago by ▴ 30
0
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0
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383
views
News: NCBI ClinVar XML update to accommodate somatic variants
SNP XML ClinVar NCBI
3 months ago by PeterC_NCBI ▴ 410
0
votes
0
replies
297
views
News: Workshop on Virtual Screening on Drug Discovery from scratch (15-16 September, 2023 : 07.00 - 09.00 PM IST)
workshop virtual-screening
updated 6 months ago by 43k • written 7 months ago by • 0
0
votes
0
replies
330
views
News: RNAseq data analysis with R/Bioconductor
R RNA-seq Bioconductor
updated 6 months ago by 43k • written 7 months ago by ★ 2.5k
0
votes
0
replies
342
views
News: Course - RNAseq in non-model organisms
R Differential-Expression-Analysis RNA-seq Bioconductor
updated 6 months ago by 43k • written 7 months ago by ★ 2.5k
4
votes
2
replies
589
views
News: Standalone NCBI ClusteredNR database now available for download
ClusteredNR NCBI standalone BLAST
7 months ago by PeterC_NCBI ▴ 410
0
votes
0
replies
351
views
News: Virtual Variant Detection Workshop: September 11-14, 2023
tutorial detection genomics workshop variant
7 months ago by mia.nahom ▴ 10
0
votes
0
replies
311
views
News: Introduction to Deep Learning for Biologists course
Python Deep-Learning Machine-Learning
updated 7 months ago by 43k • written 7 months ago by ★ 2.5k
0
votes
0
replies
350
views
News: Course - Reproducibility Data Analysis with R
R renv Version-Control Reproducibility
updated 6 months ago by 43k • written 7 months ago by ★ 2.5k
0
votes
0
replies
435
views
News: Online course: Easily analyze single cell RNA-seq data with Cellenics®, a user-friendly web-based platform
scRNA-seq training single-cell-RNA-seq
updated 7 months ago by 43k • written 7 months ago by • 0
0
votes
0
replies
490
views
News: Join Our Online Course: Incorporating Paleogenomes into Evolutionary Genomics Studies
Paleogenomics Genomics aDNA Adaptation-Genomics
updated 7 months ago by 43k • written 7 months ago by ★ 2.5k
0
votes
0
replies
379
views
News: Course on Phylogenomics
Phylogenetic-Inference Divergence-Time-Estimation Genomics Phylogenomics
updated 7 months ago by 43k • written 7 months ago by ★ 2.5k
0
votes
0
replies
388
views
News: Course. -Multivariate Data Analysis with R and vegan
R vegan MultivariateDataAnalysis
7 months ago by carlopecoraro2 ★ 2.5k
3
votes
2
replies
730
views
News: NCBI BLAST+ 2.14.1 Now Available
NCBI BLAST
7 months ago by PeterC_NCBI ▴ 410
1
vote
0
replies
297
views
News: Course - Introduction to CRISPR
CRISPR Evolution GenomeEditing
8 months ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
317
views
News: Upcoming Learning Opportunities and Important Updates
R Programming aDNA Paleogenomics
8 months ago by carlopecoraro2 ★ 2.5k
3
votes
5
replies
2.3k
views
News: (18 August - "Enzyme Stability Prediction") A free webinar on on-going CAFA5 (Critical Assessment of Functional Annotation of proteins) challenge
gene-ontology CAFA protein
8 months ago by Alexander ▴ 220
1
vote
0
replies
408
views
News: Spatial Omics course
Spatial-Omics Multiplexed-Image-Analysis
updated 6 months ago by 43k • written 8 months ago by ★ 2.5k
1
vote
0
replies
450
views
News: Generalized Additive Models in R
R GAMs Courses
8 months ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
349
views
News: NIAID Data Ecosystem Discovery Portal
databases data opendata api
8 months ago by ehaag ▴ 20
0
votes
0
replies
486
views
News: Course - Structural Variant detection and comparison
SVs Structural-Variants
updated 8 months ago by 43k • written 8 months ago by ★ 2.5k
0
votes
0
replies
371
views
News: course -Developing R/Bioconductor Packages for Genomics
R Genomics Bioconductor
updated 8 months ago by 43k • written 8 months ago by ★ 2.5k
4
votes
3
replies
1.0k
views
News: You may need to cleanup duplicate NCBI BLAST nt database volumes on your system
databases NCBI BLAST
7 months ago by PeterC_NCBI ▴ 410
0
votes
0
replies
389
views
News: Course - Data Visualization in R with ggplot2
R Data-Visualization ggplot2
updated 8 months ago by 43k • written 8 months ago by ★ 2.5k
38
votes
7
replies
2.2k
views
News: 2 last seats available - 7th Berlin Summer School in NGS Data Analysis (September 4-8 in Berlin)
Transcriptomics DNA-Seq Variant-Calling RNA-Seq
8 months ago by David Langenberger 11k
9
votes
4
replies
2.5k
views
7 follow
News: fastp 0.22 released, with new FASTQ deduplication feature.
fastp
updated 8 months ago by 43k • written 2.7 years ago by ★ 2.5k
0
votes
0
replies
481
views
News: Course - RADseq data analysis with Stacks
RADseq Phylogenomics Stacks Population-genomics
updated 8 months ago by 43k • written 9 months ago by ★ 2.5k
0
votes
0
replies
424
views
News: course - DNA METHYLATION IN ECOLOGY AND EVOLUTION
Non-Model-Organisms DNA-Methylation BS-seq
updated 8 months ago by 43k • written 9 months ago by ★ 2.5k
2
votes
0
replies
541
views
News: Registration open for Nextflow Summit 2023, and free online Nextflow / nf-core training
nextflow
9 months ago by Marcel Ribeiro-Dantas ▴ 470
0
votes
0
replies
434
views
News: 2-day Course on Introduction to Nextflow
Workflow Reproducibility Nextflow
updated 9 months ago by 43k • written 9 months ago by ★ 2.5k
1,000 results • Page 3 of 20
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C: How to setup a Summarized Experiment
A: How to download genome assemblies from NCBI with a list of GCA identifiers?
what's the genomic location and name of gene responsible for orange and black patches in calico cats
Comment: featureCounts --primary tag counting uniquely mapped reads and excludes multi-ma
Answer: Duplicate marking, read names, and the SRA
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Comment: how to find genes that are significantly expressed in brain cortex samples by Ram 43k
Can you explain the normalization or give me a link that describes it, please? Comparison across samples will always be caveated as RNA-seq…
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach by Ram 43k
Sorry, I see how harsh I come across. It's not good practice to use multiple versions of R in the same project. I can understand legacy pro…
Answer: MEGA Analysis Issue on High-Performance Computer by Mensur Dlakic ★ 27k
> I have ensured that I am using the latest version of MEGA and that other applications are not consuming excessive resources during the an…
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach by BioinfGuru ★ 1.7k
Some of us are still learning and fall foul to knowledge limitation fairly regularly. Luckily we have people to put us in our place.
Answer: Running blastp with BLAST+ 2.15.0 against custom database; need to identify hits by GenoMax 141k
> I know that I should be able to collect protein sequences from the blastp results into a file, but I do not know how to do this. You c…
Comment: how to find genes that are significantly expressed in brain cortex samples by rheab1230 ▴ 140
I got the normalized gene count from gtex portal. they use inverse quantile normalization
Comment: what's the genomic location and name of gene responsible for orange and black pa by Matthias Zepper 4.5k
It is not entirely off, but evidently also not correct. Melanin biosynthesis is a multistep process, that indeed prominently involves the…
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach by Ram 43k
> so a single Rscript could utilise multiple environments and versions How is that sane, let alone "better"? Also, why use `snap` for curl…
Comment: how to find genes that are significantly expressed in brain cortex samples by Ram 43k
Normalized how?
Comment: Duplicate marking, read names, and the SRA by GenoMax 141k
With public data one has to work with what is there. If the information about position is absent then only thing that could be done is to l…
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach by BioinfGuru ★ 1.7k
Or better yet. To have an R package that allows access to conda environments via "conda list env" so that environments can be switched with…
Comment: what's the genomic location and name of gene responsible for orange and black pa by GenoMax 141k
If GPT is right then it says that: > The specific gene responsible for the orange and non-orange (black or > gray) fur colors in cats is t…
Comment: what's the genomic location and name of gene responsible for orange and black pa by Jean-Karim Heriche 27k
As far as I know the Orange locus hasn't been mapped to a gene. Maybe this paper will help in narrowing the search: https://www.ncbi.nlm.ni…
Comment: Duplicate marking, read names, and the SRA by Luka • 0
>Curios if there a reference for this? [Apparently it's not deprecated yet][1], but will be soon and the SRA intends for it to be at some …
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach by Ram 43k
I prefer RStudio for new projects as well. The moment I need versions though, RStudio becomes a burden. I wish one could launch RStudio fro…
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