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News: New in DiffBind: dba.plotProfile() - Peak profiles and profile heatmaps
DiffBind ChIP-seq deepTools visualization ATAC-seq
6 months ago by Rory Stark ★ 1.7k
0
votes
0
replies
289
views
News: Sex Chromosome Evolution course
course Genomics
updated 3 months ago by 38k • written 6 months ago by ★ 2.3k
0
votes
0
replies
244
views
News: Online training - Data visualization in R with ggplot2
Visualization ggplot2 R Data
6 months ago by carlopecoraro2 ★ 2.3k
1
vote
0
replies
308
views
News: Searching for people who can share experience (give free webinars/discuss) on multimodal single cell data
ATAC-seq CITE-seq scRNA-seq
6 months ago by Alexander ▴ 70
0
votes
0
replies
268
views
News: Online training - Introduction to Deep Learning for biologists
Python DeepLearning bigdata MachineLearning
7 months ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
410
views
News: 2023 EMBL Courses and Conferences
EMBL EMBLMalaria EESImaging
7 months ago by EMBL Events • 0
0
votes
0
replies
274
views
News: Online training -Getting the most out of R
R Science analysis Data
7 months ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
275
views
News: Online training - Cancer Genomics in R
Cancer Genomics R
updated 3 months ago by 38k • written 7 months ago by ★ 2.3k
0
votes
0
replies
263
views
News: Online training - DNA methylation in plants and animals
OxfordNanopore DNAMethylation BSseq longreads PacBio
7 months ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
288
views
News: 3rd edition of the Analysis of RNA sequencing data with R/Bioconductor course.
RNAseq Bioconductor R
8 months ago by carlopecoraro2 ★ 2.3k
4
votes
1
reply
2.1k
views
News: 2014 ISCB Wikipedia Article Competition announcement
ISCB competition Wikipedia
written 8.6 years ago by ★ 2.0k
1
vote
2
replies
566
views
News: Online training - Introduction to Nextflow
Bionfirmatics Pipeline Workflow Netflow
7 months ago by carlopecoraro2 ★ 2.3k
4
votes
1
reply
395
views
News: Online Course - A Practical Introduction to NGS Data Analysis (September 26-28, 2022)
workshop ngs data-analysis
updated 8 months ago by 38k • written 8 months ago by 9.9k
0
votes
0
replies
366
views
News: Final Call! Tomorrow (7/8) is the Deadline for Phase 1 submissions of the NCTR Indel Calling from Oncopanel Sequencing Data Challenge!
oncopanel indel-calling
updated 3 months ago by 38k • written 8 months ago by ▴ 10
0
votes
0
replies
308
views
News: Automate your NGS data analyses and create reproducible/scalable pipelines with NextFlow
pipeline Nextflow automation
8 months ago by David Langenberger 9.9k
0
votes
1
reply
717
views
News: Hands-On RNA-Seq Data Analysis Workshop in Leipzig, Germany (October 25-28, 2022)
RNA-Seq Transcriptomics NGS Workshop
8 months ago by David Langenberger 9.9k
0
votes
3
replies
980
views
News: Less Than One Month Remaining until the Submission Deadline for Phase 1 of the NCTR Indel Calling from Oncopanel Sequencing Data Challenge!
oncopanel indel-calling
updated 3 months ago by 38k • written 9 months ago by ▴ 10
0
votes
0
replies
283
views
News: EBI Competency Hub Supporting competency-based training and professional development.
ebi carreer
8 months ago by Pierre Lindenbaum 153k
0
votes
0
replies
273
views
News: Introduction to Statistics in R for biologists
tydeverse R Statistics
8 months ago by carlopecoraro2 ★ 2.3k
1
vote
0
replies
277
views
News: Data analysis with the Tidyverse in July (18th-21st).
Visualization R Tidyverse data-analysis
updated 8 months ago by 38k • written 8 months ago by ★ 2.3k
1
vote
0
replies
263
views
News: Use your standard DNA variant caller for SNP calling in Bisulfite-Seq data
bisulfite BS-Seq methylation
8 months ago by David Langenberger 9.9k
0
votes
0
replies
318
views
News: online training - Data Visualization with Python
Python Data-Visualization
updated 8 months ago by 38k • written 8 months ago by ★ 2.3k
0
votes
0
replies
349
views
News: Cellosaurus release 42 is available
line cell biocuration knowledgebase database
8 months ago by Amos Bairoch ▴ 110
0
votes
0
replies
275
views
News: Online course- Reproducibility in Bioinformatics - 11-13 July
Docker Reproducibility
updated 3 months ago by 38k • written 9 months ago by ★ 2.3k
0
votes
0
replies
319
views
News: Online statistics courses
R statistics
9 months ago by carlopecoraro2 ★ 2.3k
0
votes
1
reply
373
views
News: API for accessing SARS-COV-2 genomic data
rpackage sars genomics api covid
updated 9 months ago by 127k • written 9 months ago by • 0
2
votes
0
replies
358
views
News: UniProt: Annotation of biologically relevant ligands using ChEBI
binding protein site metal uniprot chebi
9 months ago by Elisabeth Gasteiger ★ 2.2k
3
votes
0
replies
393
views
News: Tutorial on SemiBin (metagenonomics binning tool). June 14 - online
metagenomics binning
updated 9 months ago by 127k • written 9 months ago by ▴ 60
0
votes
0
replies
260
views
News: Nanopore direct RNA Sequencing - online course
Sequencing direct Nanopore RNA
10 months ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
246
views
News: ONLINE COURSE - LINEAR MIXED MODELS IN R - September 26th-30th
Models Mixed R
10 months ago by carlopecoraro2 ★ 2.3k
7
votes
1
reply
456
views
News: NGSymposium - Conference in Computational Biology, 23-24.09
ML statistics conference ngschool
10 months ago by kzkedzierska ▴ 290
0
votes
0
replies
301
views
News: ONLINE course "Population genomic inference from low-coverage whole-genome sequencing data"
lcWGS Genomics Population
10 months ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
300
views
News: Online course - Metabarcoding in microbial Ecology
Qiime2 Metabarcoding Microbial-Ecology
updated 3 months ago by 38k • written 10 months ago by ★ 2.3k
3
votes
1
reply
387
views
News: Free web seminars related to small non-coding RNA bioinformatics
smallRNA microRNA
updated 3 months ago by 38k • written 10 months ago by ▴ 60
0
votes
0
replies
300
views
News: ONLINE COURSE - RADseq data analysis using Stacks
Phylogenomics Population RADseq Genomics Stacks
10 months ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
281
views
News: Online course - Developing R/Bioconductor packages for genomics
Bioconductor R
updated 3 months ago by 38k • written 10 months ago by ★ 2.3k
1
vote
0
replies
411
views
News: Phase 1 of the NCTR Indel Calling from Oncopanel Sequencing Data Challenge is now live!
oncopanel indel-calling
updated 3 months ago by 38k • written 10 months ago by ▴ 10
0
votes
2
replies
564
views
News: ClusteredNR NCBI BLAST database provides faster searches and more informative BLAST results
NCBI BLAST
10 months ago by PeterC_NCBI ▴ 200
0
votes
0
replies
210
views
News: NCBI poster at Bio-IT World on the new cloud BLAST tool, ElasticBLAST
NCBI BLAST ElasticBLAST
10 months ago by PeterC_NCBI ▴ 200
1
vote
0
replies
282
views
News: DATA ANALYSIS WITH THE TIDYVERSE in July (18th-21st).
tidyverse data R analysis
11 months ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
377
views
News: Introduction to Nextflow course
Nextflow
11 months ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
322
views
News: Online Course - A Practical Introduction to NGS Data Analysis (May 16-18, 2022)
NGS RNA DNA Workshop
11 months ago by David Langenberger 9.9k
6
votes
0
replies
362
views
News: NGSchool2022: Machine Learning in Computational Biology
summer machine learning school ngschool ML statistics
11 months ago by kzkedzierska ▴ 290
0
votes
1
reply
334
views
News: Introduction to Deep Learning course
DeepLearning MachineLearning bigdata
updated 11 months ago by 21k • written 11 months ago by ★ 2.3k
3
votes
3
replies
739
views
News: Want to automate your NGS analyses and create reproducible/scalable pipelines? Join our hands-on Nextflow workshop!
nextflow NGS pipeline
11 months ago by David Langenberger 9.9k
0
votes
0
replies
871
views
News: Pre-Register for the NCTR Indel Calling from Oncopanel Sequencing Data Challenge with FDA’s National Center for Toxicological Research (NCTR) and pre…
oncopanel indel-calling
updated 3 months ago by 38k • written 11 months ago by ▴ 10
0
votes
0
replies
262
views
News: Virtual Genome Assembly Workshop : May 16-19, 2022
assembly Genome Workshop
11 months ago by singh.vijender ▴ 70
1
vote
0
replies
301
views
News: Data visualization in Python course
Data Visualization Python
11 months ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
273
views
News: Landscape Genomics in R course
LandscapeGenomics
11 months ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
280
views
News: Gene Set Enrichment Analysis in R workshop
GSE
11 months ago by carlopecoraro2 ★ 2.3k
1,000 results • Page 3 of 20
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Comment: bioinformatics problems solved by graphs data structure
Comment: bioinformatics problems solved by graphs data structure
Answer: How to analize multiple letters codes in COG IDs?
Answer: PCA in gene expression
Answer: PCA in gene expression
Comment: Enrichment analysis based on kegg for zebrafish
Question on number of possible alignments
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Comment: bioinformatics problems solved by graphs data structure by lieven.sterck 14k
et mon français est assez bien pour comprendre ce que tu as écrit la ;-)
Comment: How to analize multiple letters codes in COG IDs? by Constanza • 0
Thanks for answering so fast, it was very helpful. I shouldn't pay much attention to if COGs are separated by a comma or not then. As long…
Comment: bioinformatics problems solved by graphs data structure by lieven.sterck 14k
well, because this is not you guys' private forum, there are other people participating (not native french speaking) , just to give a reaso…
Answer: How to get gene from PSIBLAST resuts by lieven.sterck 14k
what you likely will need to do: 1. get the ID of the protein that you are interested in (out of result from PSIBLAST) 2. lookup that ID…
Answer: How to analize multiple letters codes in COG IDs? by Mensur Dlakic ★ 23k
The meaning of individual letters is described in a well-known COG functional code: https://ecoliwiki.org/colipedia/index.php/Clusters_o…
Comment: How to find promoter sequence of a gene? by sunyeping ▴ 40
The organism is mice.
Answer: How to generate GFF/GTF file from cDNA transcipts FASTA file? by Pierre Lindenbaum 153k
BLAT your cDNAs to the reference. This should be a PSL file that can be converted to a psl->gff3 converter (e.g: https://github.com/gperte…
Comment: RNAseq: same reads + more complete scaffold = fewer DEGs? by Darked89 4.2k
You may try to check what happened with DEGs obtained using the 300 fragments assembly by getting the sequences of these genes and comparin…
Comment: ExomeDepth installation error by Medha • 0
Thanks, that did work. Also in next steps, there are some arguments like bam.files, I was wondering do we require to have multiple bam fil…
Comment: ExomeDepth installation error by jared.andrews07 ★ 14k
No idea, I don't use databricks. I'd read the docs, find a local expert to help you out, or contact their support, likely in that order.
Comment: ExomeDepth installation error by Medha • 0
Hi @jaredandrews07 thanks for reverting back. I am new to R and just want to make sure ExomeDepth is working for the first time. For the Rs…
Comment: Embedded stop codon in translated nucleotide sequences in DAMBE by Mensur Dlakic ★ 23k
It is not obvious to me what exact steps you did here, but here is what I do know: there will always be stop codons even in open reading fr…
Comment: Error with a function in ATAC-seq analysis by Chris ▴ 70
So you skip the GRanges()? Yes, no error anymore but I am not sure if that causes changing in downstream analysis.
Answer: ClusterProfiler enrichKEGG – remove organism name in plots? by jv ★ 1.0k
`stringr::str_remove` can remove " - Mus musculus (house mouse)" from the pathway names which are stored under `KEGGPATHID2NAME$to` in your…
Comment: Error with a function in ATAC-seq analysis by jv ★ 1.0k
run `union` on the data frames
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