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News: Ensembl 77 is out
ensembl
updated 2.2 years ago by 43k • written 9.6 years ago by 23k
4
votes
4
replies
2.9k
views
News: Join The Dnanexus Developer Program
api cloud
updated 14 months ago by 43k • written 10.9 years ago by ▴ 30
1
vote
4
replies
1.8k
views
News: Bioconductor Development Visualization
bioconductor
updated 21 months ago by 43k • written 9.0 years ago by 26k
2
votes
4
replies
2.0k
views
News: Reminder: Igb Tutorial Starts In 30 Minutes
visualization genome-browser RNA-seq
updated 13 months ago by 43k • written 10.6 years ago by ★ 2.4k
12
votes
4
replies
2.0k
views
News: #NGSchool2018 summer school in bioinformatics
NGSchool Personalised-Medicine Nanopore
updated 11 months ago by 43k • written 5.9 years ago by ▴ 290
4
votes
4
replies
1.9k
views
News: 12th International Conference on Advancements in Bioinformatics and Drug Discovery
genome Computational-Biology
updated 11 months ago by 43k • written 6.0 years ago by ▴ 20
7
votes
4
replies
2.7k
views
News: Boston Ma Us Area Folks: Software Carpentry Workshop For Women In Science Coming Up
python training
updated 14 months ago by 43k • written 11.0 years ago by 11k
4
votes
4
replies
1.7k
views
News: VCFclin working group
vcfclin
updated 13 months ago by 43k • written 10.0 years ago by ▴ 30
6
votes
4
replies
4.2k
views
News: awesome-single-cell: a list of open-source single-cell analysis software and workshop materials
single-cell RNA-Seq
updated 12 months ago by 43k • written 7.8 years ago by 26k
0
votes
4
replies
1.9k
views
News: What NGS courses would you like us to prepare for 2016? (one week left)
NGS Survey Workshop
updated 20 months ago by 43k • written 8.4 years ago by 11k
6
votes
4
replies
1.7k
views
News: Genomic variation course at the EBI - Updated
Ensembl 1000Genomes snps variation
updated 12 months ago by 43k • written 8.1 years ago by 23k
15
votes
4
replies
4.7k
views
News: Workshop: Genomic Data Visualization and Interpretation (Berlin, Germany)
dataviz GenVisR next-gen R
updated 12 months ago by 43k • written 7.1 years ago by ★ 2.5k
15
votes
4
replies
2.6k
views
News: Call For Nominations: 2013 Benjamin Franklin Award
benjamin-franklin-award award
updated 14 months ago by 43k • written 11.2 years ago by 161k
9
votes
4
replies
2.5k
views
7 follow
News: fastp 0.22 released, with new FASTQ deduplication feature.
fastp
updated 8 months ago by 43k • written 2.7 years ago by ★ 2.5k
33
votes
4
replies
6.8k
views
News: Rosalind: A Novel Bioinformatics Education Platform
education
updated 14 months ago by 43k • written 11.6 years ago by ▴ 330
1
vote
4
replies
2.0k
views
News: webserver of TCGA data www.tcgaportal.org
genome RNA-Seq TCGA gene
updated 11 months ago by 43k • written 5.9 years ago by ▴ 40
2
votes
3
replies
3.1k
views
News: Summer Course On Analyzing Next-Generation Sequencing Data, June 10-20, Kellog Biological Station, Michigan State University
education
updated 14 months ago by 43k • written 11.2 years ago by 100k
0
votes
3
replies
2.3k
views
News: Eukaryotic Metabarcoding workshop
next-gen blast alignment
updated 12 months ago by 43k • written 7.4 years ago by ★ 2.5k
18
votes
3
replies
2.5k
views
News: LAST CALL: Next-Generation Sequencing Data Analysis: A Practical Introduction (Frankfurt, Germany) - 2 seats left
DNA-Seq NGS Workshop Variant-Calling
updated 21 months ago by 43k • written 7.1 years ago by 11k
0
votes
3
replies
866
views
News: NCBI update complete. Aspera users please update your client.
NCBI Submissions GenBank
14 months ago by PeterC_NCBI ▴ 410
0
votes
3
replies
2.2k
views
News: Bioinformatics National Certification Examination (BINC)
BINC
updated 12 months ago by 43k • written 8.0 years ago by • 0
20
votes
3
replies
2.7k
views
News: Nature Comment: Core services: Reward bioinformaticians
career-path
updated 22 months ago by 43k • written 9.0 years ago by ★ 2.2k
5
votes
3
replies
899
views
News: March 13-16: Virtual Nextflow and nf-core training event in 5 languages
nf-core pipeline Nextflow
updated 13 months ago by ▴ 340 • written 14 months ago by 4.5k
5
votes
3
replies
2.1k
views
News: Nhgri Meeting About Human Variation Analysis Live Streaming [Now Done]
next-gen exome variation
updated 14 months ago by 43k • written 11.6 years ago by 11k
7
votes
3
replies
4.6k
views
News: Pathway Commons 2 - Search And Visualize Public Biological Pathway Information. Single Point Of Access.
api cytoscape
updated 13 months ago by 43k • written 10.4 years ago by ★ 1.2k
22
votes
3
replies
3.0k
views
News: Biostar: 10,000 Question Milestone
meta
updated 14 months ago by 43k • written 10.9 years ago by 100k
4
votes
3
replies
1.9k
views
News: Proteomics and Genomics Submit your Research Journals
Research Genomics Journals Proteomics
updated 16 months ago by 43k • written 8.8 years ago by • 0
3
votes
3
replies
2.3k
views
News: Innocentive Challenge: Identify Organisms From A Stream Of Dna Sequences And Get $1,000,000
ngs
updated 14 months ago by 43k • written 11.0 years ago by ▴ 830
2
votes
3
replies
1.4k
views
News: Bio-On-Magnetic-Beads (BOMB): Open platform for high-throughput nucleic acid extraction and manipulation
rna-extraction dna-extraction rna-seq
updated 11 months ago by 43k • written 5.6 years ago by ▴ 20
2
votes
3
replies
1.7k
views
News: GCCBOSC 2018: A Bioinformatics Community Conference Call for Abstracts
Galaxy-Community-Conference BOSC GCC
updated 11 months ago by 43k • written 6.2 years ago by ★ 2.2k
1
vote
3
replies
912
views
News: NCBI BLAST ClusteredNR database now available for blastx and PSI-BLAST searches
PSI-BLAST blastx BLAST NCBI ClusteredNR
15 months ago by PeterC_NCBI ▴ 410
4
votes
3
replies
3.3k
views
News: CAFE v4.0 available
phylogenetics CAFE
updated 11 months ago by 43k • written 7.1 years ago by ▴ 150
4
votes
3
replies
1.9k
views
News: How the strengths of Lisp-family languages facilitate building complex and flexible bioinformatics applications
ChIP-Seq RNA-Seq
updated 12 months ago by 43k • written 7.3 years ago by ▴ 350
0
votes
3
replies
1.1k
views
News: Nvidia Clara Parabricks is FREE for R&D
nvidia workflow gpu
updated 16 months ago by 2.8k • written 16 months ago by 161k
4
votes
3
replies
1.9k
views
News: Boston Genomics Hackathon (facilitated by NCBI)
NCBI RNA-Seq DNA-seq hackathon
updated 12 months ago by 43k • written 8.1 years ago by ▴ 330
3
votes
3
replies
3.9k
views
News: A Tale Of Next Generation Sequencing Platforms: Ion Torrent, Pacific Biosciences And Illumina Miseq
sequencing
updated 14 months ago by 43k • written 11.7 years ago by 100k
5
votes
3
replies
1.4k
views
News: Top GitHub repos for biomedicine
open-source software GitHub
updated 11 months ago by 43k • written 5.3 years ago by ▴ 50
4
votes
3
replies
2.2k
views
News: India Recently Started Personal Genome Profiling, Commercially.
genome-profiling
updated 14 months ago by 43k • written 10.9 years ago by ▴ 1000
7
votes
3
replies
3.9k
views
News: Visualizing genomic data: techniques and challenges. Our interview with Dr. Malachi Griffith, Dr. Obi Griffith and Mr. Zachary Skidmore (The Griffith…
R RNA-Seq genome NGSdata
updated 11 months ago by 43k • written 6.8 years ago by ★ 2.5k
12
votes
3
replies
2.4k
views
News: Google Summer of Code and Open Bioinformatics Foundation is looking for students
GSoC open-source
updated 12 months ago by 43k • written 8.1 years ago by 8.3k
0
votes
3
replies
1.4k
views
News: :: FINAL CALL :: A Practical Introduction to NGS Data Analysis (Nov 29 - Dec 1, 2023 in Munich, Germany) - only 2 seats left
DNA-Seq NGS RNA-Seq Workshop
5 months ago by David Langenberger 11k
2
votes
3
replies
703
views
News: NCBI Comparative Genome Viewer now allows searches for genes across aligned assemblies
Browser NCBI Alignments Genome
16 months ago by PeterC_NCBI ▴ 410
8
votes
3
replies
1.8k
views
News: Impact of outdated gene annotations on pathway enrichment analysis
pathway-enrichment gene-ontology david go
updated 12 months ago by 43k • written 7.6 years ago by 5.1k
3
votes
3
replies
2.1k
views
News: Workshop: Berlin. Data manipulation and visualization with Python. 13-17 March (Registration deadline is today!!)
next-gen RNA-Seq genome SNP
updated 12 months ago by 43k • written 7.2 years ago by ★ 2.5k
6
votes
3
replies
2.4k
views
News: Become a Professional Biinformatician in NGS, Microarray in very fair price. Register for ArrayGen training program as soon as possible to get good a…
ChIP-Seq next-gen RNA-Seq
updated 12 months ago by 43k • written 7.2 years ago by • 0
5
votes
3
replies
1.5k
views
News: Bioinfo-Core Conference Call, October 17, 2017 (11 am EDT USA, local times around world)
bioinfo-core
updated 13 months ago by 43k • written 6.7 years ago by 141k
2
votes
3
replies
2.1k
views
News: PDX Models: Tumor-stroma interaction
transcriptome pdx R ChIP-Seq
updated 11 months ago by 43k • written 6.8 years ago by ▴ 70
0
votes
3
replies
1.0k
views
News: EMBO | EMBL Symposium: Seeing is Believing - Imaging the Molecular Processes of Life
image-analysis
updated 11 months ago by 43k • written 5.5 years ago by ▴ 10
3
votes
3
replies
1.2k
views
News: NCBI's IgBLAST version 1.21.0 is now available
IgBLAST BLAST T-Cell NCBI receptors
11 months ago by PeterC_NCBI ▴ 410
14
votes
3
replies
3.7k
views
News: Updated: Conference/Symposium/Seminar/Workshop alert 2018-2019
seminar symposium conference
updated 11 months ago by 43k • written 5.9 years ago by 5.8k
1,000 results • Page 3 of 20
Recent Votes
Comment: Correlation for ATAC-Seq and Chip-Seq
Answer: PDB residue serial inconsistency and PDB id&UniProt ID mismatch
Answer: PDB residue serial inconsistency and PDB id&UniProt ID mismatch
Answer: PDB residue serial inconsistency and PDB id&UniProt ID mismatch
Answer: PDB residue serial inconsistency and PDB id&UniProt ID mismatch
Comment: PDB residue serial inconsistency and PDB id&UniProt ID mismatch
Answer: What is the real meaning of relative enrichment/peak height of ChIP-seq tracks?
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Recent Replies
Comment: Redirection of Duplicate PMIDs by LauferVA 4.2k
let me know the scope and scale of the request (e.g. I need to do this for every record in Pubmed) and can help
Comment: Redirection of Duplicate PMIDs by LauferVA 4.2k
how is this query itself originating?
Comment: Redirection of Duplicate PMIDs by dominickd • 0
I was able to come up with a workaround using the requests library: import requests pmid = 30134295 url = 'https://pubmed.ncbi…
Comment: What is the real meaning of relative enrichment/peak height of ChIP-seq tracks? by HyperEvo • 0
Thanks for you answer! Actually I have already filtered my peak according to blacklist by bedtools. You mean it's meaningless to compare on…
Answer: Redirection of Duplicate PMIDs by GenoMax 141k
More than likely not since the database query seems to work for the redirected PMID but not the original. $ esearch -db pubmed -query …
Comment: DYH17 Structure Prediction by anasjamshed ▴ 120
Blast showed PDB: 8J07_n9(human) as best template with 62.99%. I also used swissmodel to model the protein and it showed: https://swissmod…
Comment: How to slice a gvcf file with tabix? by Pierre Lindenbaum 161k
No, in haplotypecaller
Comment: How to slice a gvcf file with tabix? by Sd • 0
Then what is the best way to do slicing for 1Mb windows? Doing `--intervals` in the GenomicsDBImport?
Comment: How to slice a gvcf file with tabix? by Pierre Lindenbaum 161k
> What is your suggestion to run GenomicsDBImport efficiently? call the GVCF by slices eg: chr1:1000000-2000000<br> run GenomicsDBImport …
Comment: How to slice a gvcf file with tabix? by Sd • 0
I want to run gatk `GenomicsDBImport` tool to build a GenomicsDB. I want to slice it to reduce the computation time since I have 1300 gvcf …
Comment: Problem to remove subset of patients with plink by chrchang523 10k
The first step has to be taken outside of PLINK here. E.g. append "_1" and "_2" to the duplicated IDs in the .ped or .fam file, then menti…
Comment: Error in cnetplot enrichplot package by Ram 43k
Show us the exact call to `cnetplot()` with a sample of all input parameters. Did you compare notes with your friend?
Comment: How to slice a gvcf file with tabix? by Pierre Lindenbaum 161k
why would you need to slice a gvcf file ? all the tools in gatk can use a BED / interval / chromosome to narrow the analysis
Comment: Error in cnetplot enrichplot package by Farhad • 0
I check dataframe it has more than 2 columns
Comment: Error in cnetplot enrichplot package by Farhad • 0
We write it to csv and then send it via email
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