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1,000 results • Page
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Sort: Views
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Views
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Replies
2
votes
0
replies
3.2k
views
News:
"Practical GWAS Using Linux and R" Workshop
GWAS
Linux
R
next-gen
updated 10 months ago by
Ram
43k • written 6.7 years ago by
carlopecoraro2
★ 2.4k
10
votes
2
replies
3.2k
views
News:
Biostars based Q&A for Bioconductor: http://support.bioconductor.org
RNA-Seq
bioconductor
updated 2.2 years ago by
Ram
43k • written 9.5 years ago by
Pierre Lindenbaum
160k
2
votes
0
replies
3.2k
views
News:
Promoter Design Challenge: Design A Plant Promoter And We Will Construct It.
plant-promoter
transcription-factor
updated 13 months ago by
Ram
43k • written 11.1 years ago by
promotercad
▴ 20
3
votes
0
replies
3.2k
views
News:
Tumorportal - A Tool For Exploring A Pan-Cancer Dataset
tcga
cancer-genomics
updated 13 months ago by
Ram
43k • written 10.1 years ago by
Malachi Griffith
19k
1
vote
1
reply
3.2k
views
News:
Course: STATISTICS FOR BIOLOGISTS USING R. 18-22 September (Berlin)
statistics
R
updated 11 months ago by
Ram
43k • written 7.2 years ago by
carlopecoraro2
★ 2.4k
0
votes
1
reply
3.2k
views
News:
Call For Book Chapters: Big Data Analytics in Genomics (Springer USA)
Book-Chapter
CFP
updated 19 months ago by
Ram
43k • written 8.4 years ago by
kc.w
▴ 10
7
votes
0
replies
3.2k
views
News:
Ncbi E-Utilities Now Provides Output In Json Format (Einfo, Esearch, And Esummary Only, For Now)
ncbi
format
eutils
entrez
updated 19 months ago by
Ram
43k • written 10.1 years ago by
Pierre Lindenbaum
160k
0
votes
0
replies
3.2k
views
News:
sRNAbench: profiling of small RNAs and its sequence variants in single or multi-species high-throughput experiments
webserver
isomiRs
microRNA
small-RNA
updated 12 months ago by
Ram
43k • written 9.4 years ago by
David Langenberger
11k
4
votes
3
replies
3.1k
views
News:
-max_target_seqs 1 in NCBI standalone BLAST does not do what you think it does
blast
updated 10 months ago by
Ram
43k • written 5.5 years ago by
5heikki
11k
2
votes
2
replies
3.1k
views
News:
Upcoming Hands-On NGS Data Analysis Workshops 2018
Mapping
Workshop
RNA-Seq
Quality-Control
DNA-Seq
updated 10 months ago by
Ram
43k • written 6.3 years ago by
David Langenberger
11k
2
votes
0
replies
3.1k
views
News:
Short Course And Workshop On Rna-Seq Analysis
RNA-seq
updated 13 months ago by
Ram
43k • written 10.2 years ago by
jan.christian
▴ 60
7
votes
1
reply
3.1k
views
News:
A Multi-Split Mapping Algorithm For Circular Rna, Splicing, Trans-Splicing, And Fusion Detection
ngs
mapping
updated 13 months ago by
Ram
43k • written 10.1 years ago by
David Langenberger
11k
3
votes
0
replies
3.1k
views
News:
Statistics and R for the Life Sciences from Harvard University (Start: 19 Jan 2015)
edX
statistics
updated 24 months ago by
Ram
43k • written 9.2 years ago by
rtliu
★ 2.2k
11
votes
13
replies
3.1k
views
News:
Ensembl datacentre shut-down: Friday 26th August - Tuesday 30th August 2016
Maintenance
Ensembl
updated 11 months ago by
Ram
43k • written 7.6 years ago by
Ben_Ensembl
★ 2.3k
10
votes
1
reply
3.1k
views
News:
Ucsc: Dna Sequences In Web Pages Indexed By Bing.Com / Microsoft Research (All Phenotype And Literature Tracks)
web
ucsc
updated 13 months ago by
Ram
43k • written 10.2 years ago by
Pierre Lindenbaum
160k
13
votes
2
replies
3.1k
views
News:
A Summary Of All Encode Related News On The Openhelix Blog: Encode Floods The News
encode
updated 13 months ago by
Ram
43k • written 11.6 years ago by
Istvan Albert
100k
4
votes
2
replies
3.1k
views
News:
NCBI NOW (Next generation sequencing Online Workshop) October 13 - 23 , 2015
NCBI
DNA-Seq
NGS
RNA-Seq
updated 12 months ago by
Ram
43k • written 8.5 years ago by
rtliu
★ 2.2k
2
votes
3
replies
3.0k
views
News:
Summer Course On Analyzing Next-Generation Sequencing Data, June 10-20, Kellog Biological Station, Michigan State University
education
updated 13 months ago by
Ram
43k • written 11.2 years ago by
Istvan Albert
100k
9
votes
5
replies
3.0k
views
News:
The NIH Software Discovery Index | We invite your comments
NIH
software-catalog
updated 2.2 years ago by
Ram
43k • written 9.5 years ago by
Sean Davis
26k
3
votes
2
replies
3.0k
views
News:
Bioinformatics On Windows And Windows Cloud
windows
cloud
updated 13 months ago by
Ram
43k • written 11.4 years ago by
xied75
▴ 20
5
votes
0
replies
3.0k
views
News:
Penn State now offers an Online Graduate Certificate: Applied Bioinformatics
bioinformatics-education
updated 12 months ago by
Ram
43k • written 9.6 years ago by
Istvan Albert
100k
0
votes
1
reply
3.0k
views
News:
Workshop: 16S rRNA gene Metabarcoding (Berlin. 3-7 April 2017)
next-gen
alignment
blast
R
updated 11 months ago by
Ram
43k • written 7.1 years ago by
carlopecoraro2
★ 2.4k
3
votes
0
replies
3.0k
views
News:
Introduction to Python for Biologists and Advanced Python for Biologists courses
Python
updated 14 months ago by
Ram
43k • written 8.8 years ago by
Bert Overduin
★ 3.7k
2
votes
0
replies
3.0k
views
News:
2nd Edition of the Biostar Handbook. New online course starts now.
biostar-handbook
updated 10 months ago by
Ram
43k • written 5.2 years ago by
Istvan Albert
100k
0
votes
0
replies
3.0k
views
News:
Travel and accommodation bursaries for workshops on Gene expression analysis, Metabolomics, RAD analysis or Population genomics in Environmental ‘Omi…
workshop
updated 2.4 years ago by
Ram
43k • written 9.7 years ago by
Daniel
★ 4.0k
22
votes
3
replies
3.0k
views
News:
Biostar: 10,000 Question Milestone
meta
updated 13 months ago by
Ram
43k • written 10.9 years ago by
Istvan Albert
100k
0
votes
0
replies
3.0k
views
News:
Bioinformatics Hands-On Workshop: Discovering standard and non-standard RNA transcripts
workshop
transcripts
fusion-transcripts
RNA-Seq
updated 2.3 years ago by
Ram
43k • written 9.7 years ago by
David Langenberger
11k
4
votes
0
replies
2.9k
views
News:
New simulation dataset for 'A benchmark for RNA-seq quantification pipelines'
RNA-Seq
updated 11 months ago by
Ram
43k • written 7.8 years ago by
Michael Love
★ 2.6k
10
votes
0
replies
2.9k
views
News:
Cfp: Camda 2013 Challenge: Big Data In Life Sciences
ngs
conference
updated 13 months ago by
Ram
43k • written 11.0 years ago by
okko.clevert
▴ 240
6
votes
1
reply
2.9k
views
News:
The Art of Bioinformatics Scripting. A new book in the Biostar Handbook collection.
education
updated 3.5 years ago by
ghazala.bif.2k18
• 0 • written 4.4 years ago by
Istvan Albert
100k
2
votes
0
replies
2.9k
views
News:
New article on TCGA data & useful resource: Comprehensive Genomic Characterization of Long Non-coding RNAs across Human Cancers
RNA-Seq
long-noncoding-RNAs
updated 19 months ago by
Ram
43k • written 8.5 years ago by
EagleEye
7.5k
0
votes
0
replies
2.9k
views
News:
WORKSHOP: Computational Approaches to Study Biological Mechanisms. Bringing together large scale ‘omics approaches and classical computational modell…
workshop
updated 2.3 years ago by
Ram
43k • written 9.7 years ago by
Daniel
★ 4.0k
4
votes
0
replies
2.9k
views
News:
Wed 9/25 On-Line, Live Tutorial For Integrated Genome Browser
visualization
ChIP-seq
RNA-seq
igv
genome-browser
updated 13 months ago by
Ram
43k • written 10.5 years ago by
Ann
★ 2.4k
6
votes
1
reply
2.9k
views
News:
"Oxford University Press to Publish NAR Genomics and Bioinformatics"
journal
updated 10 months ago by
Ram
43k • written 4.9 years ago by
Pierre Lindenbaum
160k
4
votes
4
replies
2.9k
views
News:
Join The Dnanexus Developer Program
api
cloud
updated 13 months ago by
Ram
43k • written 10.8 years ago by
akislyuk
▴ 30
14
votes
11
replies
2.9k
views
6 follow
News:
Announcing bioSyntax: Syntax highlighting for biological files
computational-biology
updated 10 months ago by
Ram
43k • written 6.2 years ago by
anicet.ebou
▴ 170
3
votes
0
replies
2.9k
views
News:
DNA Variant Calling Workshop
next-gen
SNP
updated 11 months ago by
Ram
43k • written 7.8 years ago by
Adele Feuerstein
▴ 460
2
votes
6
replies
2.9k
views
News:
Master in integrated systems biology / Luxembourg
systems-biology
Masters-course
updated 10 months ago by
Ram
43k • written 6.7 years ago by
Rainer
▴ 130
7
votes
0
replies
2.9k
views
News:
Correction for "A benchmark for RNA-seq quantification pipelines"
RNA-seq
updated 11 months ago by
Ram
43k • written 7.8 years ago by
rairizarry
▴ 70
8
votes
8
replies
2.8k
views
News:
Coronavirus Genome Analysis: a new volume in the Biostar Handbook
biostar-handbook
education
updated 9 months ago by
Ram
43k • written 4.1 years ago by
Istvan Albert
100k
6
votes
1
reply
2.8k
views
News:
GMOD Online Training 2014 coming up
galaxy
chado
gmod
annotation
updated 12 months ago by
Ram
43k • written 10.0 years ago by
Mary
11k
4
votes
0
replies
2.8k
views
News:
Python for Scientists - FREE Ebook from O'Reilly
python
Data-Analysis
updated 12 months ago by
Ram
43k • written 8.5 years ago by
rtliu
★ 2.2k
5
votes
1
reply
2.8k
views
News:
Canadian Bioinformatics Workshops Series Announced For 2014
training
updated 13 months ago by
Ram
43k • written 10.3 years ago by
Obi Griffith
20k
11
votes
1
reply
2.8k
views
News:
NGS Data Analysis Workshop for Beginners in Munich (full)
RNA-Seq
training
NGS
workshop
updated 20 months ago by
Ram
43k • written 7.7 years ago by
David Langenberger
11k
1
vote
0
replies
2.8k
views
News:
Workshop: Oxford Nanopore MinION Sequencing - Data Handling, Analysis and Applications, 1 November 2016, Edinburgh
Oxford-Nanopore
training
minION
updated 11 months ago by
Ram
43k • written 7.5 years ago by
Bert Overduin
★ 3.7k
0
votes
0
replies
2.8k
views
News:
Call-for-Papers in Epigenomics (BMRI, impact factor 2.7)
epigenomics
papers
updated 12 months ago by
Ram
43k • written 9.5 years ago by
benoukraf
• 0
2
votes
0
replies
2.8k
views
News:
WORKSHOP - Introduction to Python for biologists
next-gen
python
SNP
RNA-Seq
updated 11 months ago by
Ram
43k • written 7.1 years ago by
oliverhooker
▴ 110
0
votes
0
replies
2.8k
views
News:
course: Advanced R Programming. Berlin
R
updated 10 months ago by
Ram
43k • written 6.2 years ago by
carlopecoraro2
★ 2.4k
0
votes
3
replies
2.8k
views
News:
Physalia-courses: 16S rRNA gene Metabarcoding Workshop
RNA-seq
sequencing
SNP
gene
sequence
updated 11 months ago by
Ram
43k • written 7.4 years ago by
carlopecoraro2
★ 2.4k
4
votes
2
replies
2.8k
views
News:
New ebook: From cell line to Command line to learn computational biology
unix
snakemake
computational-biology
RNA-seq
4 months ago by
Ming Tommy Tang
★ 3.9k
1,000 results • Page
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Recent Votes
Answer: log2(TPM+1)
Comment: Error in openning FastQC
Comment: F*up Night style events for Bioinformatics ? Comment if you're interested!
Answer: F*up Night style events for Bioinformatics ? Comment if you're interested!
Answer: F*up Night style events for Bioinformatics ? Comment if you're interested!
Comment: F*up Night style events for Bioinformatics ? Comment if you're interested!
Comment: F*up Night style events for Bioinformatics ? Comment if you're interested!
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Comment: Is it reasonable to discard reads that show variation of quality across its leng
by
BRENO
• 0
Yikes. Well, this is from an Illumina MiniSeq. Sure, I will use alignment, but only to remove host reads. Then the remaining reads will go …
Comment: Is it reasonable to discard reads that show variation of quality across its leng
by
GenoMax
140k
This is going to be tough to diagnose. Are you going to align to a reference? If so go ahead with the alignments to see if alignments turn …
Comment: Is it reasonable to discard reads that show variation of quality across its leng
by
BRENO
• 0
Thank you for replying. I have separated the reads with at least one N on them and they account for 0.2% of the total reads in the file (8'…
Comment: Error running local blastn in R using system2
by
Mensur Dlakic
★ 26k
The `-db data/nt_euk` switch means that in your current directory you have a subdirectory called `data`, and all the `nt_euk` files are in …
Comment: Low number of both surviving reads after trimming
by
Jay
• 0
Thank you for your opinion. I will try with lower LEADING and TRAILING bases. By the way, I tried to set `keepBothReads:true` through sear…
Comment: Error in openning FastQC
by
GenoMax
140k
At this point it would be beneficial to learn some of the basics of command line. Please use this UNIX tutorial since you seem to be new to…
Comment: vcf file: number of samples does not match number of columns
by
Pierre Lindenbaum
160k
> ore or have any suggestions for fixing it? it's a problem with your upstream process. You'd better fix it.
Comment: Error in openning FastQC
by
friszd
• 0
after running fastqc -o output.html input.fastq, terminal returns: " Specified output directory 'output.html' does not exist " , when i run…
Comment: Is it reasonable to discard reads that show variation of quality across its leng
by
GenoMax
140k
The question you should be looking into is why the Q scores are dropping there? Are there `N` calls indicating some issue with that cycle?
Comment: Error in openning FastQC
by
GenoMax
140k
What is `ctrl+c ctrl+v`? You may actually be killing the running fastqc process. If you run `fastqc` interactively (like what was shown ab…
Comment: F*up Night style events for Bioinformatics ? Comment if you're interested!
by
Dave Carlson
★ 1.7k
Ugh. I've definitely done this one before as well. And was none too happy about it.
Comment: Error in openning FastQC
by
friszd
• 0
fastqc -o output.html input.fastq ctrl+c ctrl+v
Comment: Error running local blastn in R using system2
by
GenoMax
140k
What do you see if you `cat nt_euk.nal`? Do the number of pieces mentioned in that file match with what you locally have?
Comment: Low number of both surviving reads after trimming
by
GenoMax
140k
It is your data and if you want to do that it is up to you. You may be throwing away essentially good data (you should remove the nextera s…
Comment: F*up Night style events for Bioinformatics ? Comment if you're interested!
by
Istvan Albert
100k
Some things never change ... the most common mistake is still the one on top there
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