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News: Call for Abstracts: BOSC 2019: Bioinformatics Open Source Conference
BOSC Conference Open-Source
updated 2 days ago by 39k • written 4.2 years ago by ★ 2.2k
2
votes
0
replies
860
views
News: Registration open for Galaxy Community Conference (GCC) 2019
galaxy
updated 2 days ago by 39k • written 4.2 years ago by 103k
4
votes
0
replies
1.0k
views
News: Workshop for genomic data visualization and interpretation
R RNA-Seq ggplot2 genomics
updated 6 days ago by 39k • written 4.5 years ago by 19k
0
votes
0
replies
727
views
News: Phylogenomics course in Berlin
SNP next-gen
updated 6 days ago by 39k • written 4.2 years ago by ★ 2.3k
0
votes
0
replies
573
views
News: Join a private beta of new RNA-seq data analysis app
beta-testing RNA-Seq
updated 6 days ago by 39k • written 4.2 years ago by • 0
0
votes
0
replies
898
views
News: Course on Molecular Phylogeny in Poland (15-18 July 2019)
Phylogeny R Barcoding Molecular-Ecology
updated 6 days ago by 39k • written 4.2 years ago by ★ 2.3k
0
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0
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1.0k
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News: Training in Molecular Modeling and Molecular Dynamics @NIH,May 21-24,2019
dynamics training biology RNA-Seq modeling
updated 6 days ago by 39k • written 4.2 years ago by ▴ 130
2
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0
replies
838
views
News: Speciation Genomics course in Canada this September
snp R genome
updated 6 days ago by 39k • written 4.2 years ago by ★ 2.3k
2
votes
7
replies
1.4k
views
News: Beyond pest control: What can we learn from parasites?
docking heme parasitism in-silico
updated 6 days ago by 39k • written 4.2 years ago by 52k
0
votes
0
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733
views
News: OmicsLogic Online Bioinformatics Program (March 2019) has started
genome RNA-Seq next-gen
updated 6 days ago by 39k • written 4.2 years ago by ▴ 340
8
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6
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16k
views
News: Bioinformatics PhD Programs in the US
education PhD
updated 15 days ago by 39k • written 5.5 years ago by ▴ 70
1
vote
0
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779
views
News: 7th Annual Mendelian Data Analysis Workshop - Learn bioinformatic tools for analysis of exome and genome sequence data for rare diseases.
sequence genome next-gen analysis
updated 6 days ago by 39k • written 4.2 years ago by ▴ 10
1
vote
0
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649
views
News: Gen3 DCF Services Webinar - Authentication, Authorization and Indexing
Gen3 Webinar
updated 6 days ago by 39k • written 4.2 years ago by ▴ 10
0
votes
0
replies
931
views
News: Genomic Data Visualization course
R visualization Bioconductor
updated 6 days ago by 39k • written 4.2 years ago by ★ 2.3k
1
vote
0
replies
1.1k
views
News: Bioinformatic Analysis of Next Generation Sequencing Data @NIH
training RNA-Seq next-gen
updated 6 days ago by 39k • written 4.3 years ago by ▴ 130
0
votes
0
replies
728
views
News: BSB Forum (Bioinformatics & Systems Biology Collaborative Projects)
Systems-Biology
updated 6 days ago by 39k • written 4.3 years ago by ▴ 20
0
votes
0
replies
644
views
News: Programming in R
R Programming
updated 6 days ago by 39k • written 4.3 years ago by ★ 2.3k
6
votes
0
replies
2.1k
views
News: Bioinformatics internships with Google Summer of Code 2019
intern Ensembl GSOC
updated 6 days ago by 39k • written 4.3 years ago by 23k
1
vote
0
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636
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News: Check out precision FDA's Featured Expert Blog from Dr. Charles Eaton
biomarker Dupytrens genetic crowd-sourcing
updated 6 days ago by 39k • written 4.3 years ago by ▴ 60
2
votes
0
replies
844
views
News: GWAS course in Canada
GWAS
updated 6 days ago by 39k • written 4.3 years ago by ★ 2.3k
0
votes
0
replies
554
views
News: Interested in Genomic Data Visualization?
R RNA-Seq next-gen
updated 6 days ago by 39k • written 4.3 years ago by ★ 2.3k
3
votes
1
reply
949
views
News: Results are now available for the precisionFDA CDRH Biothreat Challenge!
NGS metagenomics FDA biothreat
updated 6 days ago by 39k • written 4.3 years ago by ▴ 60
0
votes
0
replies
839
views
News: Applied Statistics and Bioinformatics with R and Bioconductor
R next-gen Bioconductor
updated 6 days ago by 39k • written 4.3 years ago by ★ 2.3k
0
votes
0
replies
742
views
News: Programming for Biomedical Researchers @NIH, USA, April 23-26,2019
researchers biomedical
updated 6 days ago by 39k • written 4.3 years ago by ▴ 130
0
votes
0
replies
819
views
News: 16S Microbial Metabarcoding Workshop. Last 4 spots available
Metabarcoding
updated 6 days ago by 39k • written 4.3 years ago by ★ 2.3k
2
votes
1
reply
755
views
News: Gene set enrichment and pathway analysis in HT data
next-gen-sequencing RNA-Seq
updated 6 days ago by 39k • written 4.3 years ago by ★ 2.3k
0
votes
0
replies
1.5k
views
News: 16S/ ITS Metabarcoding course using QIIME2 platform
Metabarcoding
updated 6 days ago by 39k • written 4.3 years ago by ★ 2.3k
0
votes
0
replies
1.5k
views
News: Integrative Genomic Viewer (IGV) works with Amazon S3
amazon igv
updated 6 days ago by 39k • written 4.3 years ago by ▴ 610
3
votes
1
reply
810
views
News: Results are now available for the precisionFDA NCI-CPTAC Multi-omics Enabled Sample Mislabeling Correction Challenge!
precisionFDA NCI challenge algorithm multi-omics
updated 6 days ago by 39k • written 4.3 years ago by ▴ 60
1
vote
1
reply
848
views
News: Conference news: Final list of speakers for DataTech19, Scotland's data science conference
python data-science R hpc
updated 6 days ago by 39k • written 4.3 years ago by ▴ 20
1
vote
2
replies
888
views
News: Sage Bionetworks is seeking researchers and data scientists to participate in software user research!
research software
updated 6 days ago by 39k • written 4.3 years ago by ▴ 30
1
vote
0
replies
862
views
News: Genomic Data Visualization using R
R
updated 6 days ago by 39k • written 4.3 years ago by ★ 2.3k
0
votes
0
replies
797
views
News: Introduction to Bayesian Statistics using Stan
statistics
updated 6 days ago by 39k • written 4.3 years ago by ★ 2.3k
1
vote
0
replies
646
views
News: Naxatra: Advance program on RNAseq and bioinformatics
NGS hands-on-workshop RNA-Seq
updated 6 days ago by 39k • written 4.3 years ago by ★ 1.1k
6
votes
2
replies
901
views
News: Temporarily reduced functionality of Ensembl and Ensembl Genomes
Ensembl
updated 6 days ago by 39k • written 4.3 years ago by ★ 2.2k
1
vote
0
replies
610
views
News: SNAKEMAKE course in Berlin. Last places available
Python
updated 6 days ago by 39k • written 4.3 years ago by ★ 2.3k
0
votes
0
replies
607
views
News: New Course: Advanced R Programming in Berlin
R Programming
updated 6 days ago by 39k • written 4.3 years ago by ★ 2.3k
0
votes
0
replies
986
views
News: Training in Computational Drug Design and Discovery @NIH,USA, April 9-12,2019
biomedical drug-design training genomics RNA-Seq
updated 6 days ago by 39k • written 4.3 years ago by ▴ 130
0
votes
0
replies
581
views
News: NATIONAL LEVEL HANDS ON WORKSHOP ON CRISPR-Cas9
CRISPR-Cas9 sequence next-gen
updated 6 days ago by 39k • written 4.3 years ago by • 0
0
votes
0
replies
1.2k
views
News: New bioinformatics courses at Edinburgh Genomics
Training R Linux RNA-Seq Workshop
updated 6 days ago by 39k • written 4.3 years ago by ▴ 40
0
votes
0
replies
1.2k
views
News: Metabarcoding Workshop. 4-8 March
metabarcoding next-gen
updated 6 days ago by 39k • written 4.4 years ago by ★ 2.3k
0
votes
0
replies
826
views
News: Phylogenomics course in Berlin. 20-24 May
RADseq phylogenomics
updated 6 days ago by 39k • written 4.4 years ago by ★ 2.3k
2
votes
0
replies
2.6k
views
News: 2nd Edition of the Biostar Handbook. New online course starts now.
biostar-handbook
updated 6 days ago by 39k • written 4.4 years ago by 98k
0
votes
0
replies
744
views
News: Course: Metagenomics and Barcoding in Greece, April 1-5, Transmitting Science
R next-gen
updated 6 days ago by 39k • written 4.4 years ago by • 0
0
votes
0
replies
995
views
News: Training in Statistical Analysis using R @NIH, March 20-22,2019
RStudio Statistical-Analysis training
updated 6 days ago by 39k • written 4.4 years ago by ▴ 130
10
votes
4
replies
1.5k
views
News: 3rd Berlin Summer School in NGS Data Analysis (2 seats just became available)
NGS RNA-Seq DNA-Seq
updated 6 days ago by 39k • written 4.4 years ago by 9.9k
0
votes
0
replies
739
views
News: SNAKEMAKE course in Berlin. Last 3 places
Pipeline Python
updated 6 days ago by 39k • written 4.4 years ago by ★ 2.3k
1
vote
0
replies
841
views
News: NCBI Webinar: New Variation Services for Normalizing, Remapping, and Annotating Variants
Variation dbsnp API SPDI Clinvar
updated 6 days ago by 39k • written 4.4 years ago by ▴ 70
0
votes
1
reply
1.1k
views
News: Squeezing biology out of statistics: Gene set and pathway analysis in HT data. Berlin, 11-15 March
R RNA-Seq next-gen ChIP-Seq
updated 6 days ago by 39k • written 4.4 years ago by ★ 2.3k
0
votes
0
replies
1.2k
views
News: Training in Metagenomics Data Analysis @ NIH, March 12-15,2019
Metagenomics Analysis Training
updated 6 days ago by 39k • written 4.4 years ago by ▴ 130
520 results • Page 3 of 11
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Answer: Help with running ATAC using Encode pipeline
Answer: How to extract haplotype data from phased bcf files
Answer: How to extract haplotype data from phased bcf files
Comment: My kernel is killing the pairtools dedup script, how to prevent that?
Comment: ggsave() bug in ggplot2?
Comment: BioInformatics, Software
Comment: Single Cell Rna Seq Using BD Rhapsody
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Scholar to Pierre Lindenbaum 154k
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Comment: All combinations of two columns R by Basti ★ 1.5k
Where are you stuck ? You need to give a reproducible example if you want a precise answer
Comment: How to extract haplotype data from phased bcf files by Lynne-95 • 0
Thanks that worked perfectly!
Answer: How to extract haplotype data from phased bcf files by Pierre Lindenbaum 154k
use %TGT (translated genotype) $ bcftools query -f '[%CHROM %POS %TGT\n]'
Comment: convert data frame with character column to data frame with integer column by Basti ★ 1.5k
You would better give an example with values because we don't know what is in each variable so we cannot give you a precise code, but seems…
Comment: RNASeq gene labeling and mRNA filter from bulkRNA data. by ATpoint 72k
This information is annotated in GTF files. You can get them for almost every annotated species from Ensembl. There is a column `gene_bioty…
Answer: DE genes across multiple scRNAseq clusters-are they significantly enriched? by ATpoint 72k
First of all, with thousands of DEGs you might want to choose a DE framework that allows testing against a fold change threshold, such as `…
Comment: PacBio Pipeline and Tools for Variant Call by Kiran ▴ 80
Thanks a lot William, I am Clear now
Comment: The famous WGS dataset, Ashkenazi Trio? by cmdcolin ★ 3.0k
what is valuable information to you
Answer: Why weblogo of biopython doesn't work? by minakshiboruahassam • 0
The weblogo3 application is giving same file even if u run the scripts separately on python standalone or whatever. The weblogo command is …
Answer: Make a BedGraph file by rfran010 ▴ 90
I would suggest bedtools makewindows to generate your 3,000bp bins then bedtools coverage to generate fraction of repeats over your windows…
Answer: What is the best way to clean bulk RNA-seq data? by rfran010 ▴ 90
Honestly, I am a fan of visualizing to select a threshold since these can depend on the specific experiment. I would even just run standard…
Answer: Help with running ATAC using Encode pipeline by rfran010 ▴ 90
Read all instructions carefully Specifically, this info is under the "Input JSON file specification" section with details in the followin…
Answer: BioInformatics, Software by rfran010 ▴ 90
There have been some good suggestions, but it seems like you may be asking one of two questions, either (1) how to do bioinformatics? or (2…
Answer: Genome assembly statistical tools by Bryan • 0
I'll follow up what a few others have mentioned, but I like stats.sh within the BBTools package for raw assembly stats. I'll then polish my…
Comment: how to design a guide RNA by rfran010 ▴ 90
I agree this is very basic CRISPR mechanism and you'd be better off reading sites that could explain better than me. However, there is a lo…
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