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18 results • Page
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News:
Announcement: Research Topic "Mechanistic, Machine Learning and Hybrid Models of the 'Other' Endocrine Regulatory Systems in Health and Disease", Vol…
systems_biology
endocrinology
machine_learning
ML
mathematical_modelling
1 hour ago by
Johannes W. Dietrich
• 0
0
votes
0
replies
62
views
News:
Online course: Reproducibility in Bioinformatics
Singularity
Version-Control
Docker
Containers
updated 15 hours ago by
Ram
43k • written 15 hours ago by
carlopecoraro2
★ 2.4k
0
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0
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54
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News:
Online course: Analysis of Prokaryotic Pangenomes (Last call)
Prokaryotic
Bacterial-Genomics
Pangenomics
updated 15 hours ago by
Ram
43k • written 16 hours ago by
carlopecoraro2
★ 2.4k
0
votes
0
replies
116
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News:
Online course: Introduction to GWAS
GWAS
Imputation
StatisticalPower
5 days ago by
carlopecoraro2
★ 2.4k
0
votes
0
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119
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News:
Online course: Adaptation Genomics
StructuralVariants
Selection
AdaptationGenomics
PopulationStructure
10 days ago by
carlopecoraro2
★ 2.4k
0
votes
0
replies
110
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News:
Online course: Analysis of Prokaryotic Pangenomes
BacterialGenomics
Pangenomics
10 days ago by
carlopecoraro2
★ 2.4k
0
votes
0
replies
191
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News:
Online course on Genome Assembly and Annotation (1 seat left)
Galaxy
GenomeAssembly
GenomeAnnotation
14 days ago by
carlopecoraro2
★ 2.4k
1
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0
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133
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News:
NCBI's ClinVar now accepting somatic variation data
variation
NCBI
somatic-variants
ClinVar
14 days ago by
PeterC_NCBI
▴ 410
1
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1
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233
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News:
EMBL Course Hands-on course for sample preparation and data analysis in proteomics
EMBLProteomics
updated 15 days ago by
dr.eldeib89
• 0 • written 7 weeks ago by
EMBL Events
▴ 10
1
vote
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147
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News:
Learn how to create robust bioinformatics pipelines for reproducible and comparable NGS analyses
nextflow
pipeline
workshop
17 days ago by
David Langenberger
11k
8
votes
1
reply
242
views
News:
Registration OPEN: 8th Berlin Summer School in NGS Data Analysis (June 10-14, 2024)
Workshop
DNA-Seq
RNA-Seq
Illumina
updated 17 days ago by
JohnBlue81
▴ 500 • written 22 days ago by
David Langenberger
11k
0
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0
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121
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News:
Online course: Genome Assembly and Annotation - 3 seats left
Genome-Assembly
Galaxy
Genome-Annotation
updated 17 days ago by
Ram
43k • written 18 days ago by
carlopecoraro2
★ 2.4k
0
votes
0
replies
116
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News:
Call for abstract: Quest for Orthologs meeting in Montreal
conference
phylogeny
comparativegenomics
orthology
evolution
19 days ago by
sina.majidian
▴ 20
8
votes
2
replies
560
views
News:
LAST CALL - Single-Cell RNA-Seq Data Analysis: A Practical Introduction (May 6-8, 2024 in Berlin)
single-cell
sequencing
23 days ago by
David Langenberger
11k
1
vote
0
replies
130
views
News:
shournal: A Tool for Bioinformaticians to Boost Research Reproducibility
reproducability
terminal
bash
24 days ago by
David Langenberger
11k
1
vote
1
reply
159
views
News:
Integrated Genome Browser (IGB) Office Hours
Integrated-Genome-Browser
IGB
updated 24 days ago by
Ram
43k • written 24 days ago by
IGB Helper
• 0
0
votes
0
replies
152
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News:
Online course: Network Analysis in Systems Biology with R/Bioconductor
R
RNA-seq
Network-Analysis
Bioconductor
Systems-Biology
updated 24 days ago by
Ram
43k • written 25 days ago by
carlopecoraro2
★ 2.4k
0
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0
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189
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News:
The 2024 Canadian Bioinformatics Workshops are here!
CBW
workshop
training
28 days ago by
bioinformatics.ca
• 0
18 results • Page
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Recent Votes
Announcement: Research Topic "Mechanistic, Machine Learning and Hybrid Models of the 'Other' Endocrine Regulatory Systems in Health and Disease", Volume II
Comment: Number of CPUs to use by DRAP for transcriptomic assmbly
Comment: Gene reads all zero for each sample
Synthetic lethality and cancer database
Answer: log2(TPM+1)
Comment: Error in openning FastQC
Comment: F*up Night style events for Bioinformatics ? Comment if you're interested!
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brian.fristensky
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Answer: Mapping ortholog human and mouse transcript
by
BioinfGuru
★ 1.6k
That error is on the server side, nothing to do with you, and is very common. Usually the fix is to try again in an hour, or to insert host…
Comment: Nanopore multisample variant calling
by
emilydolivo97
• 0
hello @colindaven , Did you find a suitable tool for this purpose please ? I'm dealing with fungal dataset
Comment: How do I get the gene annotations as a text file from a genebank file?
by
BioinfGuru
★ 1.6k
Can you upload or post a link to the genbank file please?
Comment: Mapping ortholog human and mouse transcript
by
manaswwm
▴ 490
I usually perform biomaRt queries with their `getBM()` function where I list the input using `filter` and `values` option and my request in…
Comment: DESeq2 and normalization
by
JH
• 0
Thank you for your response. I have often seen commands like dds <- estimateSizeFactors(dds) normalized_counts <- counts(dds, normalized=T…
Comment: Number of CPUs to use by DRAP for transcriptomic assmbly
by
Mohamed Abderrahmane
▴ 10
It's the case that there's no indication of multi-threading in the documentation. However, it made me wonder why the developers would restr…
Answer: Is RNAseq data from a monoclonal cell line technically considered scRNAseq?
by
Soheil
▴ 90
Bulk RNAseq from any sample is still considered a bulk sample. Running bulk RNA sequencing on a sample with any level of cell type/state c…
Comment: Is it reasonable to discard reads that show variation of quality across its leng
by
BRENO
• 0
Yikes. Well, this is from an Illumina MiniSeq. Sure, I will use alignment, but only to remove host reads. Then the remaining reads will go …
Comment: Is it reasonable to discard reads that show variation of quality across its leng
by
GenoMax
140k
This is going to be tough to diagnose. Are you going to align to a reference? If so go ahead with the alignments to see if alignments turn …
Comment: Is it reasonable to discard reads that show variation of quality across its leng
by
BRENO
• 0
Thank you for replying. I have separated the reads with at least one N on them and they account for 0.2% of the total reads in the file (8'…
Comment: Error running local blastn in R using system2
by
Mensur Dlakic
★ 26k
The `-db data/nt_euk` switch means that in your current directory you have a subdirectory called `data`, and all the `nt_euk` files are in …
Comment: Low number of both surviving reads after trimming
by
Jay
• 0
Thank you for your opinion. I will try with lower LEADING and TRAILING bases. By the way, I tried to set `keepBothReads:true` through sear…
Comment: Error in openning FastQC
by
GenoMax
140k
At this point it would be beneficial to learn some of the basics of command line. Please use this UNIX tutorial since you seem to be new to…
Comment: vcf file: number of samples does not match number of columns
by
Pierre Lindenbaum
160k
> ore or have any suggestions for fixing it? it's a problem with your upstream process. You'd better fix it.
Comment: Error in openning FastQC
by
friszd
• 0
after running fastqc -o output.html input.fastq, terminal returns: " Specified output directory 'output.html' does not exist " , when i run…
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