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News: Course -Metabarcoding in Microbial Ecology
R Qiime2 Microbial-Ecology Metabarcoding
updated 6 months ago by 43k • written 6 months ago by ★ 2.5k
0
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0
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352
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News: Become a Bioinformatics Pro: Easy Understanding Starts Here
Structural-Bioinformatics
updated 6 months ago by 43k • written 6 months ago by • 0
0
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0
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369
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News: Course - Flow Cytometry analysis with R/Bioconductor
R Flow-Cytometry Bioconductor
updated 6 months ago by 43k • written 6 months ago by ★ 2.5k
0
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1
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1.1k
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News: FINAL CALL - Workshop - Single-Cell RNA-Seq Data Analysis: A Practical Introduction (November 8-10, 2023 in Berlin)
workshop RNA-Seq scRNA-Seq single-cell
6 months ago by David Langenberger 11k
0
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1
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836
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News: FINAL CALL: Online Course - A Practical Introduction to NGS Data Analysis - October 23-25, 2023
DNA-seq Workshop RNA-seq
6 months ago by David Langenberger 11k
0
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0
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408
views
News: Course - Metabolomics in R/Bioconductor
R Data-Analysis Metabolomics Bioconductor
updated 6 months ago by 43k • written 6 months ago by ★ 2.5k
13
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9
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2.6k
views
7 follow
News: Inviting NEW Biostars moderators to join Biostars slack channel
slack moderator
6 months ago by GenoMax 141k
0
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0
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367
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News: Cellosaurus release 47 is available
cellosauraus cell-line biocuration knowledgebase
updated 6 months ago by 43k • written 6 months ago by ▴ 120
0
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328
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News: Course: Seascape Genomics in R course
R GEA Seascape-Genomics Adaptation-Genomics
updated 6 months ago by 43k • written 6 months ago by ★ 2.5k
0
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342
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News: Course :MACHINE LEARNING - A HANDS-ON INTRODUCTION IN R
R Statistical-Learning Omics Machine-Learning
updated 6 months ago by 43k • written 6 months ago by ★ 2.5k
0
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0
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466
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News: Course - Gene Set Enrichment Analysis in R/Bioconductor
Gene-Set-Enrichment-Analysis GSEA R Genomics Bioconductor
updated 6 months ago by 43k • written 6 months ago by ★ 2.5k
0
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0
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356
views
News: New NCBI Datasets APIs to Replace Old Ones
NCBI API Datasets
7 months ago by PeterC_NCBI ▴ 410
0
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0
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391
views
News: RADseq data analysis course
RADseq Phylogenomics Stacks Population-Genomics
6 months ago by carlopecoraro2 ★ 2.5k
0
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1
reply
613
views
News: EMBL-EBI virtual course | Introduction to RNA-seq and functional interpretation
RNA-seq
updated 7 months ago by 43k • written 7 months ago by • 0
1
vote
0
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407
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News: Online Training - Bioinformatics Pipeline Development with Nextflow (November 15-17, 2023)
nextflow automation pipeline development
7 months ago by David Langenberger 11k
2
votes
1
reply
457
views
News: Successful NCBI NIAID Codeathon on VCF Files in SARS-CoV-2 Genomics
NCBI Codeathon
updated 7 months ago by 10k • written 7 months ago by ▴ 410
0
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0
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361
views
News: Research Breakthrough in Identifying Viral Escape Mutations for Improved Therapeutic Design
sequence-analysis sars-cov-2 spike-protein
updated 7 months ago by 43k • written 7 months ago by • 0
0
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0
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347
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News: Course: Data Manipulation and Visualisation with Python
Python Data-Visualization Data-Manipulation
updated 7 months ago by 43k • written 7 months ago by ★ 2.5k
0
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2
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918
views
News: The Practice of RADseq: Population Genomics Analysis with Stacks (RADS02) Early bird deadline approaching - 20th September
population-genomics radseq stacks
updated 7 months ago by ★ 1.7k • written 7 months ago by ▴ 110
0
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0
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344
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News: Course - GLMMs in R
GLMM Mixed-Models
updated 7 months ago by 43k • written 7 months ago by ★ 2.5k
0
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0
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355
views
News: Introduction to Nextflow (2 seats left)
Nextflow Workflow Reproducibility
updated 7 months ago by 43k • written 7 months ago by ★ 2.5k
0
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0
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412
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News: Genomic Prediction course
Genomic-Prediction GWAS
updated 6 months ago by 43k • written 7 months ago by ★ 2.5k
0
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0
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445
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News: course - Population Genomics Using Ancient DNA Data
Genomics aDNA Population-Genomics
updated 6 months ago by 43k • written 7 months ago by ★ 2.5k
3
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5
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1.3k
views
News: Ensembl Release 104 and newer GTF files no longer have genes sorted by position
Ensembl GTF
updated 7 months ago by ▴ 120 • written 17 months ago by ▴ 30
0
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0
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386
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News: NCBI ClinVar XML update to accommodate somatic variants
SNP XML ClinVar NCBI
3 months ago by PeterC_NCBI ▴ 410
0
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0
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299
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News: Workshop on Virtual Screening on Drug Discovery from scratch (15-16 September, 2023 : 07.00 - 09.00 PM IST)
workshop virtual-screening
updated 6 months ago by 43k • written 7 months ago by • 0
0
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0
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330
views
News: RNAseq data analysis with R/Bioconductor
R RNA-seq Bioconductor
updated 6 months ago by 43k • written 7 months ago by ★ 2.5k
0
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0
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344
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News: Course - RNAseq in non-model organisms
R Differential-Expression-Analysis RNA-seq Bioconductor
updated 6 months ago by 43k • written 7 months ago by ★ 2.5k
4
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2
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590
views
News: Standalone NCBI ClusteredNR database now available for download
ClusteredNR NCBI standalone BLAST
7 months ago by PeterC_NCBI ▴ 410
0
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0
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352
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News: Virtual Variant Detection Workshop: September 11-14, 2023
tutorial detection genomics workshop variant
7 months ago by mia.nahom ▴ 10
0
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0
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311
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News: Introduction to Deep Learning for Biologists course
Python Deep-Learning Machine-Learning
updated 7 months ago by 43k • written 7 months ago by ★ 2.5k
0
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0
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352
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News: Course - Reproducibility Data Analysis with R
R renv Version-Control Reproducibility
updated 6 months ago by 43k • written 7 months ago by ★ 2.5k
0
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0
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437
views
News: Online course: Easily analyze single cell RNA-seq data with Cellenics®, a user-friendly web-based platform
scRNA-seq training single-cell-RNA-seq
updated 7 months ago by 43k • written 7 months ago by • 0
0
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0
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492
views
News: Join Our Online Course: Incorporating Paleogenomes into Evolutionary Genomics Studies
Paleogenomics Genomics aDNA Adaptation-Genomics
updated 7 months ago by 43k • written 7 months ago by ★ 2.5k
0
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0
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380
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News: Course on Phylogenomics
Phylogenetic-Inference Divergence-Time-Estimation Genomics Phylogenomics
updated 7 months ago by 43k • written 7 months ago by ★ 2.5k
0
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0
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391
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News: Course. -Multivariate Data Analysis with R and vegan
R vegan MultivariateDataAnalysis
8 months ago by carlopecoraro2 ★ 2.5k
3
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2
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732
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News: NCBI BLAST+ 2.14.1 Now Available
NCBI BLAST
8 months ago by PeterC_NCBI ▴ 410
1
vote
0
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298
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News: Course - Introduction to CRISPR
CRISPR Evolution GenomeEditing
8 months ago by carlopecoraro2 ★ 2.5k
0
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0
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321
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News: Upcoming Learning Opportunities and Important Updates
R Programming aDNA Paleogenomics
8 months ago by carlopecoraro2 ★ 2.5k
3
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5
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2.3k
views
News: (18 August - "Enzyme Stability Prediction") A free webinar on on-going CAFA5 (Critical Assessment of Functional Annotation of proteins) challenge
gene-ontology CAFA protein
8 months ago by Alexander ▴ 220
1
vote
0
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411
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News: Spatial Omics course
Spatial-Omics Multiplexed-Image-Analysis
updated 6 months ago by 43k • written 8 months ago by ★ 2.5k
1
vote
0
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452
views
News: Generalized Additive Models in R
R GAMs Courses
8 months ago by carlopecoraro2 ★ 2.5k
0
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0
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350
views
News: NIAID Data Ecosystem Discovery Portal
databases data opendata api
8 months ago by ehaag ▴ 20
0
votes
0
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490
views
News: Course - Structural Variant detection and comparison
SVs Structural-Variants
updated 8 months ago by 43k • written 8 months ago by ★ 2.5k
0
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0
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372
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News: course -Developing R/Bioconductor Packages for Genomics
R Genomics Bioconductor
updated 8 months ago by 43k • written 8 months ago by ★ 2.5k
4
votes
3
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1.0k
views
News: You may need to cleanup duplicate NCBI BLAST nt database volumes on your system
databases NCBI BLAST
8 months ago by PeterC_NCBI ▴ 410
0
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0
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391
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News: Course - Data Visualization in R with ggplot2
R Data-Visualization ggplot2
updated 8 months ago by 43k • written 8 months ago by ★ 2.5k
38
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7
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2.2k
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News: 2 last seats available - 7th Berlin Summer School in NGS Data Analysis (September 4-8 in Berlin)
Transcriptomics DNA-Seq Variant-Calling RNA-Seq
9 months ago by David Langenberger 11k
9
votes
4
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2.5k
views
7 follow
News: fastp 0.22 released, with new FASTQ deduplication feature.
fastp
updated 9 months ago by 43k • written 2.7 years ago by ★ 2.5k
0
votes
0
replies
483
views
News: Course - RADseq data analysis with Stacks
RADseq Phylogenomics Stacks Population-genomics
updated 8 months ago by 43k • written 9 months ago by ★ 2.5k
897 results • Page 3 of 18
Recent Votes
Comment: Bwa sampe - BGI
Comment: Redirection of Duplicate PMIDs
Answer: Redirection of Duplicate PMIDs
A: Should I Remove All Positions Containing A Gap In A Multiple Alignment Prior To
Should I Remove All Positions Containing A Gap In A Multiple Alignment Prior To Creating A Phylogenetic Tree?
Answer: Is it Acceptable to Have Uniform Quality Scores in a FASTQ File?
Comment: Installing feature counts package in command line
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Popular Question to v.berriosfarias ▴ 140
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Answer: HaplotypeCaller - only SNPs by Pierre Lindenbaum 161k
Filter the vcf dowstream after haplotypecaller using bcftools or gatk variantfiltration
Answer: Gene set enrichment analysis differences between 2020 and 2024 by geneontologyhelp ▴ 360
We have releases about monthly in order to keep our data accurate and reflect current understanding. In 4 years, there have been about 40 r…
Comment: How do I use the STARSolo aligner with MGI DNBelab C series HT scRNAseq librarie by GenoMax 141k
Let us know when you find out. Would be a useful thing to know what the data looks like.
Comment: How do I use the STARSolo aligner with MGI DNBelab C series HT scRNAseq librarie by atowns21 • 0
Yes, that is a very good idea. Thanks for the help!
Comment: How do I use the STARSolo aligner with MGI DNBelab C series HT scRNAseq librarie by GenoMax 141k
Only thing would be to try them out. See if you can detect them in the data you have. You could also simply look for unique representativ…
Comment: How to calculate identity percentage between proteins contained in a FASTA file? by GenoMax 141k
`clustal omega` can calculate distance matrix between two proteins (makes sense if your proteins are of similar size). You could try that: …
Comment: Should I use unpaired reads from trimmomatic by swbarnes2 14k
If the unpaired are _2, files, the _1 must exist somewhere. But the simple answer is probably going to be to just use all the _2 only. Yo…
Comment: Is it Acceptable to Have Uniform Quality Scores in a FASTQ File? by GenoMax 141k
> The needless granularity (fake precision) was obvious from the start You are assuming that all data generated is always of great quality…
Answer: Blasting two protein sequences vs two nucleotide sequences by Istvan Albert 100k
There are various versions of blast, that search in translated spaces, see blastx and tblastn https://blast.ncbi.nlm.nih.gov/Blast.cgi …
Answer: Should I use unpaired reads from trimmomatic by Istvan Albert 100k
If you have lots of data, both paired and unpaired, then the best strategy is probably to treat them separately and merge the counts at the…
Comment: Difference between samtools "-f 9" and "-f 11" by Istvan Albert 100k
It is very easy to make nonsensical flags (unfortunately a flaw of the SAM spec itself) ... not to mention the awkward constructs: a primar…
Comment: Heatmap and rna-seq by Istvan Albert 100k
This forum is dedicated to asking their question on bioinformatics. As long as the topic is bioinformatics, all questions are welcome, and …
Comment: Is it Acceptable to Have Uniform Quality Scores in a FASTQ File? by Istvan Albert 100k
I interpret this as an admission by SRA that phred scores are practically useless. The needless granularity (fake precision) was obvious f…
Comment: TCGA2STAT Error: Firehose connection by Ram 43k
If their github repo is alive, raise an issue there.
Comment: TCGA2STAT Error: Firehose connection by Ngrin • 0
Yeah makes sense. I was following their github. Thanks for pointing this out.
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