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News: Bioinformatics Phoenix
web-server
updated 6 months ago by 43k • written 6 months ago by • 0
1
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320
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News: Course - Developing R/Bioconductor Packages for Genomics
R package-development Genomics Bioconductor
updated 6 months ago by 43k • written 6 months ago by ★ 2.5k
0
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0
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318
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News: Course -Metabarcoding in Microbial Ecology
R Qiime2 Microbial-Ecology Metabarcoding
updated 6 months ago by 43k • written 6 months ago by ★ 2.5k
0
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0
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354
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News: Become a Bioinformatics Pro: Easy Understanding Starts Here
Structural-Bioinformatics
updated 6 months ago by 43k • written 6 months ago by • 0
0
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0
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374
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News: Course - Flow Cytometry analysis with R/Bioconductor
R Flow-Cytometry Bioconductor
updated 6 months ago by 43k • written 6 months ago by ★ 2.5k
0
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1
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1.1k
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News: FINAL CALL - Workshop - Single-Cell RNA-Seq Data Analysis: A Practical Introduction (November 8-10, 2023 in Berlin)
workshop RNA-Seq scRNA-Seq single-cell
6 months ago by David Langenberger 11k
0
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1
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838
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News: FINAL CALL: Online Course - A Practical Introduction to NGS Data Analysis - October 23-25, 2023
DNA-seq Workshop RNA-seq
6 months ago by David Langenberger 11k
0
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0
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410
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News: Course - Metabolomics in R/Bioconductor
R Data-Analysis Metabolomics Bioconductor
updated 6 months ago by 43k • written 6 months ago by ★ 2.5k
13
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9
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2.6k
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7 follow
News: Inviting NEW Biostars moderators to join Biostars slack channel
slack moderator
6 months ago by GenoMax 141k
0
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0
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370
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News: Cellosaurus release 47 is available
cellosauraus cell-line biocuration knowledgebase
updated 6 months ago by 43k • written 6 months ago by ▴ 120
0
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0
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329
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News: Course: Seascape Genomics in R course
R GEA Seascape-Genomics Adaptation-Genomics
updated 6 months ago by 43k • written 6 months ago by ★ 2.5k
0
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0
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343
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News: Course :MACHINE LEARNING - A HANDS-ON INTRODUCTION IN R
R Statistical-Learning Omics Machine-Learning
updated 6 months ago by 43k • written 6 months ago by ★ 2.5k
0
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0
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469
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News: Course - Gene Set Enrichment Analysis in R/Bioconductor
Gene-Set-Enrichment-Analysis GSEA R Genomics Bioconductor
updated 6 months ago by 43k • written 6 months ago by ★ 2.5k
0
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0
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357
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News: New NCBI Datasets APIs to Replace Old Ones
NCBI API Datasets
7 months ago by PeterC_NCBI ▴ 410
0
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0
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395
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News: RADseq data analysis course
RADseq Phylogenomics Stacks Population-Genomics
6 months ago by carlopecoraro2 ★ 2.5k
0
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1
reply
617
views
News: EMBL-EBI virtual course | Introduction to RNA-seq and functional interpretation
RNA-seq
updated 7 months ago by 43k • written 7 months ago by • 0
1
vote
0
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409
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News: Online Training - Bioinformatics Pipeline Development with Nextflow (November 15-17, 2023)
nextflow automation pipeline development
7 months ago by David Langenberger 11k
2
votes
1
reply
459
views
News: Successful NCBI NIAID Codeathon on VCF Files in SARS-CoV-2 Genomics
NCBI Codeathon
updated 7 months ago by 10k • written 7 months ago by ▴ 410
0
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0
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363
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News: Research Breakthrough in Identifying Viral Escape Mutations for Improved Therapeutic Design
sequence-analysis sars-cov-2 spike-protein
updated 7 months ago by 43k • written 7 months ago by • 0
0
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0
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351
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News: Course: Data Manipulation and Visualisation with Python
Python Data-Visualization Data-Manipulation
updated 7 months ago by 43k • written 7 months ago by ★ 2.5k
0
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2
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919
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News: The Practice of RADseq: Population Genomics Analysis with Stacks (RADS02) Early bird deadline approaching - 20th September
population-genomics radseq stacks
updated 7 months ago by ★ 1.7k • written 7 months ago by ▴ 110
0
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0
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345
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News: Course - GLMMs in R
GLMM Mixed-Models
updated 7 months ago by 43k • written 7 months ago by ★ 2.5k
0
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0
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356
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News: Introduction to Nextflow (2 seats left)
Nextflow Workflow Reproducibility
updated 7 months ago by 43k • written 7 months ago by ★ 2.5k
0
votes
0
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415
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News: Genomic Prediction course
Genomic-Prediction GWAS
updated 6 months ago by 43k • written 7 months ago by ★ 2.5k
0
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0
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447
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News: course - Population Genomics Using Ancient DNA Data
Genomics aDNA Population-Genomics
updated 6 months ago by 43k • written 7 months ago by ★ 2.5k
3
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5
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1.3k
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News: Ensembl Release 104 and newer GTF files no longer have genes sorted by position
Ensembl GTF
updated 7 months ago by ▴ 120 • written 17 months ago by ▴ 30
0
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0
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388
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News: NCBI ClinVar XML update to accommodate somatic variants
SNP XML ClinVar NCBI
3 months ago by PeterC_NCBI ▴ 410
0
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0
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301
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News: Workshop on Virtual Screening on Drug Discovery from scratch (15-16 September, 2023 : 07.00 - 09.00 PM IST)
workshop virtual-screening
updated 6 months ago by 43k • written 7 months ago by • 0
0
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0
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332
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News: RNAseq data analysis with R/Bioconductor
R RNA-seq Bioconductor
updated 6 months ago by 43k • written 7 months ago by ★ 2.5k
0
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0
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346
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News: Course - RNAseq in non-model organisms
R Differential-Expression-Analysis RNA-seq Bioconductor
updated 6 months ago by 43k • written 7 months ago by ★ 2.5k
4
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2
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593
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News: Standalone NCBI ClusteredNR database now available for download
ClusteredNR NCBI standalone BLAST
7 months ago by PeterC_NCBI ▴ 410
0
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0
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353
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News: Virtual Variant Detection Workshop: September 11-14, 2023
tutorial detection genomics workshop variant
7 months ago by mia.nahom ▴ 10
0
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0
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314
views
News: Introduction to Deep Learning for Biologists course
Python Deep-Learning Machine-Learning
updated 7 months ago by 43k • written 7 months ago by ★ 2.5k
0
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0
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353
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News: Course - Reproducibility Data Analysis with R
R renv Version-Control Reproducibility
updated 6 months ago by 43k • written 7 months ago by ★ 2.5k
0
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0
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438
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News: Online course: Easily analyze single cell RNA-seq data with Cellenics®, a user-friendly web-based platform
scRNA-seq training single-cell-RNA-seq
updated 7 months ago by 43k • written 7 months ago by • 0
0
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0
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494
views
News: Join Our Online Course: Incorporating Paleogenomes into Evolutionary Genomics Studies
Paleogenomics Genomics aDNA Adaptation-Genomics
updated 7 months ago by 43k • written 7 months ago by ★ 2.5k
0
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0
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381
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News: Course on Phylogenomics
Phylogenetic-Inference Divergence-Time-Estimation Genomics Phylogenomics
updated 7 months ago by 43k • written 7 months ago by ★ 2.5k
0
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0
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393
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News: Course. -Multivariate Data Analysis with R and vegan
R vegan MultivariateDataAnalysis
8 months ago by carlopecoraro2 ★ 2.5k
3
votes
2
replies
735
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News: NCBI BLAST+ 2.14.1 Now Available
NCBI BLAST
8 months ago by PeterC_NCBI ▴ 410
1
vote
0
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300
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News: Course - Introduction to CRISPR
CRISPR Evolution GenomeEditing
8 months ago by carlopecoraro2 ★ 2.5k
0
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0
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322
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News: Upcoming Learning Opportunities and Important Updates
R Programming aDNA Paleogenomics
8 months ago by carlopecoraro2 ★ 2.5k
3
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5
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2.3k
views
News: (18 August - "Enzyme Stability Prediction") A free webinar on on-going CAFA5 (Critical Assessment of Functional Annotation of proteins) challenge
gene-ontology CAFA protein
8 months ago by Alexander ▴ 220
1
vote
0
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414
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News: Spatial Omics course
Spatial-Omics Multiplexed-Image-Analysis
updated 6 months ago by 43k • written 8 months ago by ★ 2.5k
1
vote
0
replies
454
views
News: Generalized Additive Models in R
R GAMs Courses
8 months ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
351
views
News: NIAID Data Ecosystem Discovery Portal
databases data opendata api
8 months ago by ehaag ▴ 20
0
votes
0
replies
491
views
News: Course - Structural Variant detection and comparison
SVs Structural-Variants
updated 8 months ago by 43k • written 8 months ago by ★ 2.5k
0
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0
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373
views
News: course -Developing R/Bioconductor Packages for Genomics
R Genomics Bioconductor
updated 8 months ago by 43k • written 8 months ago by ★ 2.5k
4
votes
3
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1.0k
views
News: You may need to cleanup duplicate NCBI BLAST nt database volumes on your system
databases NCBI BLAST
8 months ago by PeterC_NCBI ▴ 410
0
votes
0
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392
views
News: Course - Data Visualization in R with ggplot2
R Data-Visualization ggplot2
updated 8 months ago by 43k • written 8 months ago by ★ 2.5k
38
votes
7
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2.3k
views
News: 2 last seats available - 7th Berlin Summer School in NGS Data Analysis (September 4-8 in Berlin)
Transcriptomics DNA-Seq Variant-Calling RNA-Seq
9 months ago by David Langenberger 11k
1,000 results • Page 3 of 20
Recent Votes
Answer: clustalo - align milions of short seq, memory issue
Comment: downloading genomes in fasta format from accession ids
Comment: PCA plot (Suggestions Needed)
Answer: PCA plot (Suggestions Needed)
PCA plot (Suggestions Needed)
Comment: To get p-values for the TPM
A: Where To Download Pam50 Gene Set?
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Comment: Why cd-hit-est not work when sequence identity threshold<0.95？ by Dateline • 0
So, why? I have 18GB of data, and when -c=0.95, the run ends in about two days, while when -c=0.9, it has been three days and only a little…
Answer: Heatmap and rna-seq by Kevin Blighe 87k
Hi, you can take the list of GSEA pathways and then use these via GSVA (https://github.com/rcastelo/GSVA) to create a heatmap. You hav…
Comment: Clustering of DAVID gene enrichment results from gene expression studies by Kevin Blighe 87k
You will have to elaborate on what is the error
Comment: clustalo - align milions of short seq, memory issue by emmanouil.a ▴ 120
Hi GenoMax and Mensur Dlakic, thank you for your feedback. I'm changing approach in the way to work with a smaller number of seq.
Comment: Annovar using R package by Pierre Lindenbaum 161k
duplicate of your previous question: https://www.biostars.org/p/9592646/ why using R when there are shell-based tools like VEP ? slivar , …
Comment: Trouble with Pilon installation by Lissa Cruz Saavedra • 0
Hi I am trying to install the software but I didn't find the way to clone from github. Could you help me with the pipeline of instruction…
Comment: Adding CB tag to bam file by swbarnes2 14k
I think both these programs are just adding the same tag to every line. I don't think either cares whether it's called RG or CB
Comment: PCA plot (Suggestions Needed) by swbarnes2 14k
Even if this was real data, the tiny numbers for the PC1 and PC2 indicate that the differences between the samples are all absolutely tiny.…
Comment: Creating Synthetic Sequences for a ML Model by biochugs • 0
Thanks for the input. I'll continue to think of more ideas that may be achievable.
Comment: PCA plot (Suggestions Needed) by Jeremy ▴ 890
You could also try kernel PCA, which is a non-linear form of PCA, although this will be more time-consuming.
Comment: Troubleshooting RNA-seq data with DNA contamination by DKA ▴ 40
I have unstranded RNA-seq data. Please share the tool with me, if you do not mind.
Comment: PCA plot (Suggestions Needed) by Mensur Dlakic ★ 27k
Everything that @f1f58aed said, plus that there may be no data manipulation that will give you the clusters you expected. Sometimes there a…
Answer: Creating Synthetic Sequences for a ML Model by Mensur Dlakic ★ 27k
It is a good idea, though I don't see how it would work in practice. I think you will encounter at least one additional problem on top of …
Answer: PCA plot (Suggestions Needed) by Jeremy ▴ 890
Right now, the WT samples are clustering together, but you have one mutant sample off by itself, which could be an outlier. How did you sc…
Comment: Adding CB tag to bam file by GenoMax 141k
@yokofakun had written this: https://www.biostars.org/p/336965/ https://github.com/ruqianl/appendCB may also be useful.
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