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1,000 results • Page 3 of 20
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News: Genome Assembly and Annotation course
Annotation Nanopore GenomeAssembly Pacbio
6 months ago by carlopecoraro2 ★ 2.3k
3
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0
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1.0k
views
News: Changes to the default NCBI BLAST nucleotide database (nt). Learn more and provide feedback!
NCBI Databases BLAST
6 months ago by PeterC_NCBI ▴ 260
0
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0
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269
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News: Nextflow online training
Nextflow Workflow Reproducibility
updated 5 months ago by 39k • written 6 months ago by ★ 2.3k
0
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2
replies
1.0k
views
News: :: FINAL CALL :: Next-Generation Sequencing Data Analysis: A Practical Introduction (December 12-14, 2022 in Munich, Germany)
rnaseq dnaseq sequencing ngs workshop
6 months ago by David Langenberger 9.9k
0
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0
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305
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News: The Association for Single Cell Analysis (ASCA)
genomics singlecell metabolomics sequencing proteomics
6 months ago by dnsv.ev • 0
0
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0
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262
views
News: Deep Learning in Population Genomics and Phylogeography
DeepLearning Phylogeography PopulationGenomics
6 months ago by carlopecoraro2 ★ 2.3k
0
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0
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294
views
News: Metabarcoding in Microbial Ecology Workshop
Qiime2 R Metabarcoding Microbial-Ecology
7 months ago by carlopecoraro2 ★ 2.3k
1
vote
2
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413
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News: Gene Set Enrichment Analysis in R/Bioconductor
Gene-Set-Enrichment-Analysis R Cancer-Genomics GSEA
7 months ago by carlopecoraro2 ★ 2.3k
0
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0
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269
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News: Analysis of RNA sequencing data with R/Bioconductor course.
Bioconductor RNAseq R
7 months ago by carlopecoraro2 ★ 2.3k
0
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0
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384
views
News: Winter School in Bioinformatics
course workshop
updated 5 months ago by 39k • written 7 months ago by ★ 2.3k
1
vote
0
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347
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News: Introduction to Nextflow
Nextflow
updated 5 months ago by 39k • written 7 months ago by ★ 2.3k
0
votes
2
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503
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News: Seascape Genomics in R
Genomics Seascape R
updated 5 months ago by 39k • written 7 months ago by ★ 2.3k
0
votes
0
replies
260
views
News: Bioinformatics courses in November
Bioconductor Genomics R
updated 5 months ago by 39k • written 7 months ago by ★ 2.3k
0
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0
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478
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News: Flow cytometry analysis with R/Bioconductor course
Bioconductor R Cytometry Flow
7 months ago by carlopecoraro2 ★ 2.3k
0
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0
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263
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News: course: RNA-seq analyses in non-model organisms
differential Bioconductor RNAseq expression non-model organisms analysis R
7 months ago by carlopecoraro2 ★ 2.3k
0
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0
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279
views
News: course - Developing R/Bioconductor packages for genomics
developing package Bioconductor Genomics R
8 months ago by carlopecoraro2 ★ 2.3k
2
votes
0
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300
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News: Four NCBI workshops in October (BLAST, Primer-BLAST, Metagenome analysis, Structures in iCn3D)
metagenomics MagicBLAST BLAST NCBI Primer-BLAST
8 months ago by PeterC_NCBI ▴ 260
0
votes
0
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394
views
News: course - Unix and shell scripting for bioinformatics
bash Shell-scripting Unix
updated 5 months ago by 39k • written 8 months ago by ★ 2.3k
0
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0
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306
views
News: course: Data Visualization in Python
Visualisation Python Data
updated 8 months ago by 129k • written 8 months ago by ★ 2.3k
0
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0
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287
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News: Seascape Genomics in R course
Genomics R Seascape Population
8 months ago by carlopecoraro2 ★ 2.3k
0
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0
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318
views
News: Cellosaurus API
line cell API
8 months ago by Amos Bairoch ▴ 110
0
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0
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300
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News: Cellosaurus release 43 is available
cellosaurus cell-line
updated 5 months ago by 39k • written 8 months ago by ▴ 110
0
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0
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256
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News: Genomics Webinar: Using Mastermind’s New ClinVar Integration to Accelerate Clinical Diagnoses
variant-interpretation genomics database webinar
updated 5 months ago by 39k • written 8 months ago by • 0
0
votes
0
replies
237
views
News: course: Population Genomic Inference from Low-coverage Whole-genome Sequencing Data
whole-genome genomics population low-coverage sequencing
updated 8 months ago by 21k • written 8 months ago by ★ 2.3k
0
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0
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238
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News: :: FINAL CALL :: RNA-Seq Data Analysis Workshop (October 25 - 28, 2022 in Leipzig, Germany) - 2 seats left
RNA-Seq workshop transcriptomics
8 months ago by David Langenberger 9.9k
0
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0
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224
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News: Getting the most out of R course - last call
ggplot2 R tidyverse
8 months ago by carlopecoraro2 ★ 2.3k
0
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0
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306
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News: The NCTR Indel Calling from Oncopanel Sequencing Data Challenge Winners have been announced!
FDA-challenge
updated 5 months ago by 39k • written 8 months ago by ▴ 10
1
vote
0
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280
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News: Webinar (free) on Multimodal Single-Cell Data from winner of NeurIPS 2021
ATAC-seq CITE-seq scRNA-seq
8 months ago by Alexander ▴ 70
1
vote
0
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275
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News: course Reproducible Analysis With R
R Reproducibility analysis Data
8 months ago by carlopecoraro2 ★ 2.3k
0
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0
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297
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News: Virtual Genome Assembly workshop
Genome Workshop assembly Virtual
8 months ago by singh.vijender ▴ 70
10
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4
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680
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News: Good morning
good morning
updated 8 months ago by 98k • written 8 months ago by 85k
6
votes
7
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3.1k
views
News: New in DiffBind: dba.plotProfile() - Peak profiles and profile heatmaps
DiffBind ChIP-seq deepTools visualization ATAC-seq
8 months ago by Rory Stark ★ 1.7k
0
votes
0
replies
321
views
News: Sex Chromosome Evolution course
course Genomics
updated 5 months ago by 39k • written 9 months ago by ★ 2.3k
0
votes
0
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268
views
News: Online training - Data visualization in R with ggplot2
Visualization ggplot2 R Data
9 months ago by carlopecoraro2 ★ 2.3k
1
vote
0
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340
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News: Searching for people who can share experience (give free webinars/discuss) on multimodal single cell data
ATAC-seq CITE-seq scRNA-seq
9 months ago by Alexander ▴ 70
0
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0
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289
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News: Online training - Introduction to Deep Learning for biologists
Python DeepLearning bigdata MachineLearning
9 months ago by carlopecoraro2 ★ 2.3k
0
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0
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446
views
News: 2023 EMBL Courses and Conferences
EMBL EMBLMalaria EESImaging
9 months ago by EMBL Events • 0
0
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0
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300
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News: Online training -Getting the most out of R
R Science analysis Data
9 months ago by carlopecoraro2 ★ 2.3k
0
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0
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307
views
News: Online training - Cancer Genomics in R
Cancer Genomics R
updated 5 months ago by 39k • written 9 months ago by ★ 2.3k
0
votes
0
replies
287
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News: Online training - DNA methylation in plants and animals
OxfordNanopore DNAMethylation BSseq longreads PacBio
10 months ago by carlopecoraro2 ★ 2.3k
0
votes
0
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310
views
News: 3rd edition of the Analysis of RNA sequencing data with R/Bioconductor course.
RNAseq Bioconductor R
10 months ago by carlopecoraro2 ★ 2.3k
4
votes
1
reply
2.1k
views
News: 2014 ISCB Wikipedia Article Competition announcement
ISCB competition Wikipedia
written 8.8 years ago by ★ 2.0k
1
vote
2
replies
613
views
News: Online training - Introduction to Nextflow
Bionfirmatics Pipeline Workflow Netflow
10 months ago by carlopecoraro2 ★ 2.3k
4
votes
1
reply
425
views
News: Online Course - A Practical Introduction to NGS Data Analysis (September 26-28, 2022)
workshop ngs data-analysis
updated 10 months ago by 39k • written 10 months ago by 9.9k
0
votes
0
replies
390
views
News: Final Call! Tomorrow (7/8) is the Deadline for Phase 1 submissions of the NCTR Indel Calling from Oncopanel Sequencing Data Challenge!
oncopanel indel-calling
updated 5 months ago by 39k • written 11 months ago by ▴ 10
0
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0
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342
views
News: Automate your NGS data analyses and create reproducible/scalable pipelines with NextFlow
pipeline Nextflow automation
11 months ago by David Langenberger 9.9k
0
votes
1
reply
758
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News: Hands-On RNA-Seq Data Analysis Workshop in Leipzig, Germany (October 25-28, 2022)
RNA-Seq Transcriptomics NGS Workshop
11 months ago by David Langenberger 9.9k
0
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3
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1.0k
views
News: Less Than One Month Remaining until the Submission Deadline for Phase 1 of the NCTR Indel Calling from Oncopanel Sequencing Data Challenge!
oncopanel indel-calling
updated 5 months ago by 39k • written 11 months ago by ▴ 10
0
votes
0
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307
views
News: EBI Competency Hub Supporting competency-based training and professional development.
ebi carreer
11 months ago by Pierre Lindenbaum 154k
0
votes
0
replies
302
views
News: Introduction to Statistics in R for biologists
tydeverse R Statistics
11 months ago by carlopecoraro2 ★ 2.3k
1,000 results • Page 3 of 20
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Comment: STAR GenomeIndex output (which is the BAM file?)
Answer: [Meta] Use of AI
Answer: h5ad cellxgene to R
Comment: What is the benefit of knowing the source of contamination when we have RNAseq d
Answer: Rna-Seq Pipeline
Comment: Create customized gene annotation file
Answer: [Meta] Use of AI
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Comment: variant allelic fraction by Pierre Lindenbaum 154k
this is not a field provided by VEP.
Answer: WGCNA Trait File Issues by Jennifer M • 0
![enter image description here][1] [1]: /media/images/0cf4eaa7-9550-4bbb-b43e-208dc787
Comment: Pairwise Alignment by WouterDeCoster 47k
> for whole genome analysis What do you mean with that? You provide too little information for us to answer your question.
Comment: Getting species names and taxa id from assembly accession number by GenoMax 129k
There must be some temporary glitch. Following command works (via EntrezDirect): $ esearch -db assembly -query GCA_000001405.29 | esu…
Comment: h5ad cellxgene to R by abmmki • 0
matrix=adata.X.toarray() feature_names = adata.var['feature_name'] pd.DataFrame(data=matrix, index=adata.obs_names, c…
Comment: h5ad cellxgene to R by abmmki • 0
I am trying use the same data and same method. But when I read the csv expression matrix in R, it frozen. Could you share your final seurat…
Comment: h5ad cellxgene to R by abmmki • 0
I am trying use the same data and same method. But when I read the csv expression matrix in R, it frozen. Could you share your final seurat…
Comment: (ERR): "index/Trinity.fa" does not exist or is not a Bowtie 2 index Exiting now by eimanpharmacist ▴ 20
I think the problem in bowtie2 installation. it was installed using this: `conda install -c bioconda bowtie2` I removed it then re-installe…
Comment: Where to get the molecular subtype information of STAD sample in TCGA by Hamid Ghaedi 2.9k
Give `TCGAbiolinks` package a try.
Comment: How to calculate TPM from featureCounts output by survive • 0
hi, So i will need to download the raw .fastq file from SRA and run salmon/Kallisto, instead of using the featureCounts?
Answer: calculate p value and associated z score for snp-gene pair by LChart 2.6k
The simplest thing to do would be to 'force' matrixeQTL to output everything by setting `pvOutputThreshold` to 1; this should give you all …
Comment: (ERR): "index/Trinity.fa" does not exist or is not a Bowtie 2 index Exiting now by eimanpharmacist ▴ 20
It is completed but I can not find any bam files, as you see above, I should get a bowtie2.bam file as an output but I did not.
Comment: [Meta] Use of AI by GenoMax 129k
It will be up to the people posting the AI assisted/generated comments/answers to add a disclaimer/note line to their posts for now. A butt…
Comment: Is a human genome file with reference as NCBI37 the same as hg19? by Ram 39k
Don't cross-post, especially on weekends. It looks like you're in a hurry and you don't care about annoying multiple communities.
Comment: Come work with me! Bioinformatician - Boston MA by Joseph • 0
I am in Boston and my current position Principal Scientist in IHC, in situ Hybridization. I use Bioinformatics but don't have a formal degr…
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