Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : all time
all time
today
this week
this month
this year
1,000 results • Page
3 of 20
Sort: Rank
Rank
Views
Votes
Replies
0
votes
1
reply
1.1k
views
News:
FINAL CALL - Workshop - Single-Cell RNA-Seq Data Analysis: A Practical Introduction (November 8-10, 2023 in Berlin)
workshop
RNA-Seq
scRNA-Seq
single-cell
6 months ago by
David Langenberger
11k
0
votes
1
reply
829
views
News:
FINAL CALL: Online Course - A Practical Introduction to NGS Data Analysis - October 23-25, 2023
DNA-seq
Workshop
RNA-seq
6 months ago by
David Langenberger
11k
0
votes
0
replies
407
views
News:
Course - Metabolomics in R/Bioconductor
R
Data-Analysis
Metabolomics
Bioconductor
updated 6 months ago by
Ram
43k • written 6 months ago by
carlopecoraro2
★ 2.5k
13
votes
9
replies
2.6k
views
7 follow
News:
Inviting NEW Biostars moderators to join Biostars slack channel
slack
moderator
6 months ago by
GenoMax
141k
0
votes
0
replies
366
views
News:
Cellosaurus release 47 is available
cellosauraus
cell-line
biocuration
knowledgebase
updated 6 months ago by
Ram
43k • written 6 months ago by
Amos Bairoch
▴ 120
0
votes
0
replies
328
views
News:
Course: Seascape Genomics in R course
R
GEA
Seascape-Genomics
Adaptation-Genomics
updated 6 months ago by
Ram
43k • written 6 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
341
views
News:
Course :MACHINE LEARNING - A HANDS-ON INTRODUCTION IN R
R
Statistical-Learning
Omics
Machine-Learning
updated 6 months ago by
Ram
43k • written 6 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
460
views
News:
Course - Gene Set Enrichment Analysis in R/Bioconductor
Gene-Set-Enrichment-Analysis
GSEA
R
Genomics
Bioconductor
updated 6 months ago by
Ram
43k • written 6 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
352
views
News:
New NCBI Datasets APIs to Replace Old Ones
NCBI
API
Datasets
6 months ago by
PeterC_NCBI
▴ 410
0
votes
0
replies
387
views
News:
RADseq data analysis course
RADseq
Phylogenomics
Stacks
Population-Genomics
6 months ago by
carlopecoraro2
★ 2.5k
0
votes
1
reply
609
views
News:
EMBL-EBI virtual course | Introduction to RNA-seq and functional interpretation
RNA-seq
updated 6 months ago by
Ram
43k • written 6 months ago by
Rebecca
• 0
1
vote
0
replies
404
views
News:
Online Training - Bioinformatics Pipeline Development with Nextflow (November 15-17, 2023)
nextflow
automation
pipeline
development
6 months ago by
David Langenberger
11k
2
votes
1
reply
457
views
News:
Successful NCBI NIAID Codeathon on VCF Files in SARS-CoV-2 Genomics
NCBI
Codeathon
updated 6 months ago by
chrchang523
10k • written 7 months ago by
PeterC_NCBI
▴ 410
0
votes
0
replies
359
views
News:
Research Breakthrough in Identifying Viral Escape Mutations for Improved Therapeutic Design
sequence-analysis
sars-cov-2
spike-protein
updated 7 months ago by
Ram
43k • written 7 months ago by
Prem
• 0
0
votes
0
replies
343
views
News:
Course: Data Manipulation and Visualisation with Python
Python
Data-Visualization
Data-Manipulation
updated 7 months ago by
Ram
43k • written 7 months ago by
carlopecoraro2
★ 2.5k
0
votes
2
replies
916
views
News:
The Practice of RADseq: Population Genomics Analysis with Stacks (RADS02) Early bird deadline approaching - 20th September
population-genomics
radseq
stacks
updated 7 months ago by
Dave Carlson
★ 1.7k • written 7 months ago by
oliverhooker
▴ 110
0
votes
0
replies
341
views
News:
Course - GLMMs in R
GLMM
Mixed-Models
updated 7 months ago by
Ram
43k • written 7 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
351
views
News:
Introduction to Nextflow (2 seats left)
Nextflow
Workflow
Reproducibility
updated 7 months ago by
Ram
43k • written 7 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
407
views
News:
Genomic Prediction course
Genomic-Prediction
GWAS
updated 6 months ago by
Ram
43k • written 7 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
443
views
News:
course - Population Genomics Using Ancient DNA Data
Genomics
aDNA
Population-Genomics
updated 6 months ago by
Ram
43k • written 7 months ago by
carlopecoraro2
★ 2.5k
3
votes
5
replies
1.3k
views
News:
Ensembl Release 104 and newer GTF files no longer have genes sorted by position
Ensembl
GTF
updated 7 months ago by
alejandrogzi
▴ 120 • written 17 months ago by
dlaehnemann
▴ 30
0
votes
0
replies
383
views
News:
NCBI ClinVar XML update to accommodate somatic variants
SNP
XML
ClinVar
NCBI
3 months ago by
PeterC_NCBI
▴ 410
0
votes
0
replies
297
views
News:
Workshop on Virtual Screening on Drug Discovery from scratch (15-16 September, 2023 : 07.00 - 09.00 PM IST)
workshop
virtual-screening
updated 6 months ago by
Ram
43k • written 7 months ago by
sriv.reetesh
• 0
0
votes
0
replies
329
views
News:
RNAseq data analysis with R/Bioconductor
R
RNA-seq
Bioconductor
updated 6 months ago by
Ram
43k • written 7 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
342
views
News:
Course - RNAseq in non-model organisms
R
Differential-Expression-Analysis
RNA-seq
Bioconductor
updated 6 months ago by
Ram
43k • written 7 months ago by
carlopecoraro2
★ 2.5k
4
votes
2
replies
589
views
News:
Standalone NCBI ClusteredNR database now available for download
ClusteredNR
NCBI
standalone
BLAST
7 months ago by
PeterC_NCBI
▴ 410
0
votes
0
replies
351
views
News:
Virtual Variant Detection Workshop: September 11-14, 2023
tutorial
detection
genomics
workshop
variant
7 months ago by
mia.nahom
▴ 10
0
votes
0
replies
310
views
News:
Introduction to Deep Learning for Biologists course
Python
Deep-Learning
Machine-Learning
updated 7 months ago by
Ram
43k • written 7 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
349
views
News:
Course - Reproducibility Data Analysis with R
R
renv
Version-Control
Reproducibility
updated 6 months ago by
Ram
43k • written 7 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
435
views
News:
Online course: Easily analyze single cell RNA-seq data with Cellenics®, a user-friendly web-based platform
scRNA-seq
training
single-cell-RNA-seq
updated 7 months ago by
Ram
43k • written 7 months ago by
Sara
• 0
0
votes
0
replies
490
views
News:
Join Our Online Course: Incorporating Paleogenomes into Evolutionary Genomics Studies
Paleogenomics
Genomics
aDNA
Adaptation-Genomics
updated 7 months ago by
Ram
43k • written 7 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
379
views
News:
Course on Phylogenomics
Phylogenetic-Inference
Divergence-Time-Estimation
Genomics
Phylogenomics
updated 7 months ago by
Ram
43k • written 7 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
388
views
News:
Course. -Multivariate Data Analysis with R and vegan
R
vegan
MultivariateDataAnalysis
7 months ago by
carlopecoraro2
★ 2.5k
3
votes
2
replies
727
views
News:
NCBI BLAST+ 2.14.1 Now Available
NCBI
BLAST
7 months ago by
PeterC_NCBI
▴ 410
1
vote
0
replies
296
views
News:
Course - Introduction to CRISPR
CRISPR
Evolution
GenomeEditing
8 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
317
views
News:
Upcoming Learning Opportunities and Important Updates
R
Programming
aDNA
Paleogenomics
8 months ago by
carlopecoraro2
★ 2.5k
3
votes
5
replies
2.3k
views
News:
(18 August - "Enzyme Stability Prediction") A free webinar on on-going CAFA5 (Critical Assessment of Functional Annotation of proteins) challenge
gene-ontology
CAFA
protein
8 months ago by
Alexander
▴ 220
1
vote
0
replies
407
views
News:
Spatial Omics course
Spatial-Omics
Multiplexed-Image-Analysis
updated 6 months ago by
Ram
43k • written 8 months ago by
carlopecoraro2
★ 2.5k
1
vote
0
replies
450
views
News:
Generalized Additive Models in R
R
GAMs
Courses
8 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
348
views
News:
NIAID Data Ecosystem Discovery Portal
databases
data
opendata
api
8 months ago by
ehaag
▴ 20
0
votes
0
replies
486
views
News:
Course - Structural Variant detection and comparison
SVs
Structural-Variants
updated 8 months ago by
Ram
43k • written 8 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
371
views
News:
course -Developing R/Bioconductor Packages for Genomics
R
Genomics
Bioconductor
updated 8 months ago by
Ram
43k • written 8 months ago by
carlopecoraro2
★ 2.5k
4
votes
3
replies
1.0k
views
News:
You may need to cleanup duplicate NCBI BLAST nt database volumes on your system
databases
NCBI
BLAST
7 months ago by
PeterC_NCBI
▴ 410
0
votes
0
replies
389
views
News:
Course - Data Visualization in R with ggplot2
R
Data-Visualization
ggplot2
updated 8 months ago by
Ram
43k • written 8 months ago by
carlopecoraro2
★ 2.5k
38
votes
7
replies
2.2k
views
News:
2 last seats available - 7th Berlin Summer School in NGS Data Analysis (September 4-8 in Berlin)
Transcriptomics
DNA-Seq
Variant-Calling
RNA-Seq
8 months ago by
David Langenberger
11k
9
votes
4
replies
2.5k
views
7 follow
News:
fastp 0.22 released, with new FASTQ deduplication feature.
fastp
updated 8 months ago by
Ram
43k • written 2.6 years ago by
chen
★ 2.5k
0
votes
0
replies
481
views
News:
Course - RADseq data analysis with Stacks
RADseq
Phylogenomics
Stacks
Population-genomics
updated 8 months ago by
Ram
43k • written 9 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
424
views
News:
course - DNA METHYLATION IN ECOLOGY AND EVOLUTION
Non-Model-Organisms
DNA-Methylation
BS-seq
updated 8 months ago by
Ram
43k • written 9 months ago by
carlopecoraro2
★ 2.5k
2
votes
0
replies
541
views
News:
Registration open for Nextflow Summit 2023, and free online Nextflow / nf-core training
nextflow
9 months ago by
Marcel Ribeiro-Dantas
▴ 470
0
votes
0
replies
433
views
News:
2-day Course on Introduction to Nextflow
Workflow
Reproducibility
Nextflow
updated 9 months ago by
Ram
43k • written 9 months ago by
carlopecoraro2
★ 2.5k
1,000 results • Page
3 of 20
Recent Votes
Bedtools merge but only if intersection exists
Answer: Korean reference file
Comment: Korean human genome reference file
C: samtools sort bam file
A: samtools sort bam file
Answer: Downloaded pdb's on rcsb.org
Comment: Downloaded pdb's on rcsb.org
Recent Locations •
All
Singapore,
4 minutes ago
Mexico,
5 minutes ago
India,
6 minutes ago
United States,
7 minutes ago
USA,
9 minutes ago
Canada,
11 minutes ago
United States,
12 minutes ago
Recent Awards •
All
Popular Question
to
yueli7
▴ 250
Popular Question
to
Chirag Parsania
★ 2.0k
Scholar
to
LChart
3.9k
Scholar
to
swbarnes2
14k
Commentator
to
GenoMax
141k
Centurion
to
jkbonfield
★ 1.2k
Popular Question
to
Randy H
▴ 110
Recent Replies
Comment: miRNAs quantification using mirdeep2 tool
by
Ashok
• 0
thank you for your reply https://github.com/rajewsky-lab/mirdeep2/blob/master/TUTORIAL.md i saw this github tutorial for miRNA quantifica…
Comment: Load a full GFF3 into annotation track using arrow (Apollo)
by
cmdcolin
★ 3.8k
Hi there, I let a developer know of this thread and they said they can check it out next week. Feel free to post to the https://github.com/…
Comment: How to get the reference panel for UKBB
by
航太郎
• 0
Thanks for your guide!
Comment: Removing duplicates
by
joe
▴ 500
I'd try those OP @samuel recommends My guess is you're new to ONT, fast5 is the 'raw data' which is current over time...other than generat…
Comment: RNA seq differential expression analysis
by
swbarnes2
14k
No. Find a tutorial, try it, then if you have specific questions, ask of the galaxy help site.
Answer: Adding CB tag to bam file
by
swbarnes2
14k
Shouldn't you use PicardTools for this?
Comment: Downloaded pdb's on rcsb.org
by
Ram
43k
Sure. Or, one could do: bash try.bash "Homo sapiens" AHR | xargs -I v_pdb curl -s -o v_pdb.pdb https://files.rcsb.org/view/v_pdb.pdb
Comment: Downloaded pdb's on rcsb.org
by
iamsmor
• 0
thank you so much
Comment: Downloaded pdb's on rcsb.org
by
GenoMax
141k
This may be the best option. Get the PDB ID's $ ./get.sh "Mus musculus" AHR 4M4X 5NJ8 5V0L 8H77 Then use `curl` to g…
Comment: Downloaded pdb's on rcsb.org
by
Ram
43k
It gives you the first 25 results though. I'll see if I can change that. EDIT: I've updated that number to 250. I'm hoping you won't need …
Comment: Downloaded pdb's on rcsb.org
by
iamsmor
• 0
thank you very much
Answer: Downloaded pdb's on rcsb.org
by
Ram
43k
I'm going to build off of OP's query and give them a simple script: ```bash organism=$(echo $1 | sed 's/ /%20/g') gene=$2 curl -s https:/…
Comment: miRNAs quantification using mirdeep2 tool
by
GenoMax
141k
This question does not make complete sense. If you have your own data files why do you need deep sequencing reads? Genome (can be download…
Comment: Downloaded pdb's on rcsb.org
by
GenoMax
141k
For a non-programmer using the search builder link included above may be the best option. Even that is not very user friendly.
Comment: Downloaded pdb's on rcsb.org
by
Ram
43k
That's how they seem to have written their query - automating that is a bit of a pain though as it takes a crazy JSON as input.
Traffic: 2272 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6