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1,000 results • Page
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6
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News:
Upcoming online training courses
Python
R
2.6 years ago by
carlopecoraro2
★ 2.4k
2
votes
4
replies
2.0k
views
News:
Reminder: Igb Tutorial Starts In 30 Minutes
visualization
genome-browser
RNA-seq
updated 13 months ago by
Ram
43k • written 10.5 years ago by
Ann
★ 2.4k
0
votes
4
replies
1.9k
views
News:
What NGS courses would you like us to prepare for 2016? (one week left)
NGS
Survey
Workshop
updated 20 months ago by
Ram
43k • written 8.3 years ago by
David Langenberger
11k
15
votes
4
replies
4.6k
views
News:
Workshop: Genomic Data Visualization and Interpretation (Berlin, Germany)
dataviz
GenVisR
next-gen
R
updated 11 months ago by
Ram
43k • written 7.1 years ago by
carlopecoraro2
★ 2.4k
19
votes
4
replies
2.4k
views
News:
How to analyze NGS data: An overview of nine different IT solutions
NGS
RNA-Seq
DNA-Seq
updated 11 months ago by
Ram
43k • written 7.4 years ago by
David Langenberger
11k
10
votes
4
replies
1.2k
views
News:
RNA-Seq Data Analysis Workshop - Join us in Berlin, Germany from March 27-30, 2023!
NGS
transcriptomics
workshop
updated 12 months ago by
kng
▴ 30 • written 13 months ago by
David Langenberger
11k
12
votes
4
replies
2.0k
views
News:
#NGSchool2018 summer school in bioinformatics
NGSchool
Personalised-Medicine
Nanopore
updated 10 months ago by
Ram
43k • written 5.8 years ago by
kzkedzierska
▴ 290
2
votes
4
replies
1.4k
views
News:
Online training - Snakemake: Reproducible and Scalable Bioinformatic Workflows
Snakemake
Pipeline
2.3 years ago by
carlopecoraro2
★ 2.4k
6
votes
4
replies
1.6k
views
News:
Genomic variation course at the EBI - Updated
Ensembl
1000Genomes
snps
variation
updated 11 months ago by
Ram
43k • written 8.0 years ago by
Emily
23k
2
votes
4
replies
1.1k
views
News:
Course ONLINE - RNAseq data analysis with R and Bioconductor (15-19 June)
R
RNA-seq
Bioconductor
updated 9 months ago by
Ram
43k • written 3.9 years ago by
carlopecoraro2
★ 2.4k
4
votes
4
replies
1.7k
views
News:
VCFclin working group
vcfclin
updated 12 months ago by
Ram
43k • written 9.9 years ago by
keilbeck
▴ 30
6
votes
4
replies
4.2k
views
News:
awesome-single-cell: a list of open-source single-cell analysis software and workshop materials
single-cell
RNA-Seq
updated 11 months ago by
Ram
43k • written 7.8 years ago by
Sean Davis
26k
3
votes
4
replies
2.0k
views
News:
OmicCircos was updated
R
OmicCircos
updated 22 months ago by
Ram
43k • written 9.0 years ago by
yhu
▴ 50
15
votes
4
replies
2.6k
views
News:
Call For Nominations: 2013 Benjamin Franklin Award
benjamin-franklin-award
award
updated 13 months ago by
Ram
43k • written 11.1 years ago by
Pierre Lindenbaum
160k
4
votes
4
replies
2.9k
views
News:
Join The Dnanexus Developer Program
api
cloud
updated 13 months ago by
Ram
43k • written 10.8 years ago by
akislyuk
▴ 30
9
votes
4
replies
3.7k
views
News:
Conference Announcement - Camda 2013
conference
classification
updated 13 months ago by
Ram
43k • written 11.2 years ago by
okko.clevert
▴ 240
2
votes
3
replies
3.0k
views
News:
Summer Course On Analyzing Next-Generation Sequencing Data, June 10-20, Kellog Biological Station, Michigan State University
education
updated 13 months ago by
Ram
43k • written 11.2 years ago by
Istvan Albert
100k
5
votes
3
replies
860
views
News:
March 13-16: Virtual Nextflow and nf-core training event in 5 languages
nf-core
pipeline
Nextflow
updated 12 months ago by
Maxime Garcia
▴ 340 • written 13 months ago by
Matthias Zepper
4.5k
3
votes
3
replies
1.1k
views
News:
NCBI's IgBLAST version 1.21.0 is now available
IgBLAST
BLAST
T-Cell
NCBI
receptors
10 months ago by
PeterC_NCBI
▴ 410
0
votes
3
replies
2.3k
views
News:
Eukaryotic Metabarcoding workshop
next-gen
blast
alignment
updated 11 months ago by
Ram
43k • written 7.3 years ago by
carlopecoraro2
★ 2.4k
0
votes
3
replies
2.2k
views
News:
Bioinformatics National Certification Examination (BINC)
BINC
updated 11 months ago by
Ram
43k • written 7.9 years ago by
binc
• 0
18
votes
3
replies
2.5k
views
News:
LAST CALL: Next-Generation Sequencing Data Analysis: A Practical Introduction (Frankfurt, Germany) - 2 seats left
DNA-Seq
NGS
Workshop
Variant-Calling
updated 20 months ago by
Ram
43k • written 7.1 years ago by
David Langenberger
11k
4
votes
3
replies
1.0k
views
News:
You may need to cleanup duplicate NCBI BLAST nt database volumes on your system
databases
NCBI
BLAST
7 months ago by
PeterC_NCBI
▴ 410
5
votes
3
replies
1.5k
views
News:
Bioinfo-Core Conference Call, October 17, 2017 (11 am EDT USA, local times around world)
bioinfo-core
updated 12 months ago by
Ram
43k • written 6.6 years ago by
GenoMax
140k
3
votes
3
replies
2.3k
views
News:
Innocentive Challenge: Identify Organisms From A Stream Of Dna Sequences And Get $1,000,000
ngs
updated 13 months ago by
Ram
43k • written 10.9 years ago by
bioinfo
▴ 830
22
votes
3
replies
3.0k
views
News:
Biostar: 10,000 Question Milestone
meta
updated 13 months ago by
Ram
43k • written 10.9 years ago by
Istvan Albert
100k
4
votes
3
replies
1.9k
views
News:
How the strengths of Lisp-family languages facilitate building complex and flexible bioinformatics applications
ChIP-Seq
RNA-Seq
updated 11 months ago by
Ram
43k • written 7.2 years ago by
Bohdan Khomtchouk
▴ 350
2
votes
3
replies
1.6k
views
News:
GCCBOSC 2018: A Bioinformatics Community Conference Call for Abstracts
Galaxy-Community-Conference
BOSC
GCC
updated 10 months ago by
Ram
43k • written 6.1 years ago by
Chris Fields
★ 2.2k
0
votes
3
replies
2.8k
views
News:
Physalia-courses: 16S rRNA gene Metabarcoding Workshop
RNA-seq
sequencing
SNP
gene
sequence
updated 11 months ago by
Ram
43k • written 7.4 years ago by
carlopecoraro2
★ 2.4k
1
vote
3
replies
1.1k
views
News:
4th Berlin Summer School in NGS Data Analysis - October 5-9, 2020
NGS
RNA-Seq
DNA-Seq
updated 9 months ago by
Ram
43k • written 4.1 years ago by
David Langenberger
11k
9
votes
3
replies
4.8k
views
News:
Bioinformatics Contest 2020. Call for problems
contest
updated 10 months ago by
Ram
43k • written 4.5 years ago by
alserg
▴ 900
0
votes
3
replies
1.0k
views
News:
Nvidia Clara Parabricks is FREE for R&D
nvidia
workflow
gpu
updated 15 months ago by
4galaxy77
2.8k • written 15 months ago by
Pierre Lindenbaum
160k
3
votes
3
replies
988
views
News:
Want to automate your NGS analyses and create reproducible/scalable pipelines? Join our hands-on Nextflow workshop!
nextflow
NGS
pipeline
23 months ago by
David Langenberger
11k
2
votes
3
replies
2.0k
views
News:
PDX Models: Tumor-stroma interaction
transcriptome
pdx
R
ChIP-Seq
updated 10 months ago by
Ram
43k • written 6.7 years ago by
Pine Biotech
▴ 70
2
votes
3
replies
1.4k
views
News:
Bio-On-Magnetic-Beads (BOMB): Open platform for high-throughput nucleic acid extraction and manipulation
rna-extraction
dna-extraction
rna-seq
updated 10 months ago by
Ram
43k • written 5.5 years ago by
tpjurkowski
▴ 20
7
votes
3
replies
1.8k
views
News:
New NCBI Datasets home and documentation pages provide easier access
ncbi
gene
SARS-CoV-2
genome
updated 2.9 years ago by
Istvan Albert
100k • written 2.9 years ago by
e.cox
▴ 50
1
vote
3
replies
880
views
News:
NCBI BLAST ClusteredNR database now available for blastx and PSI-BLAST searches
PSI-BLAST
blastx
BLAST
NCBI
ClusteredNR
14 months ago by
PeterC_NCBI
▴ 410
7
votes
3
replies
3.8k
views
News:
Visualizing genomic data: techniques and challenges. Our interview with Dr. Malachi Griffith, Dr. Obi Griffith and Mr. Zachary Skidmore (The Griffith…
R
RNA-Seq
genome
NGSdata
updated 10 months ago by
Ram
43k • written 6.8 years ago by
carlopecoraro2
★ 2.4k
0
votes
3
replies
828
views
News:
NCBI update complete. Aspera users please update your client.
NCBI
Submissions
GenBank
13 months ago by
PeterC_NCBI
▴ 410
4
votes
3
replies
1.9k
views
News:
Proteomics and Genomics Submit your Research Journals
Research
Genomics
Journals
Proteomics
updated 16 months ago by
Ram
43k • written 8.7 years ago by
saichandh.perkannex
• 0
5
votes
3
replies
1.4k
views
News:
Top GitHub repos for biomedicine
open-source
software
GitHub
updated 10 months ago by
Ram
43k • written 5.2 years ago by
field.cady
▴ 50
4
votes
3
replies
1.8k
views
News:
Boston Genomics Hackathon (facilitated by NCBI)
NCBI
RNA-Seq
DNA-seq
hackathon
updated 11 months ago by
Ram
43k • written 8.0 years ago by
DCGenomics
▴ 330
7
votes
3
replies
4.5k
views
News:
Pathway Commons 2 - Search And Visualize Public Biological Pathway Information. Single Point Of Access.
api
cytoscape
updated 13 months ago by
Ram
43k • written 10.3 years ago by
B. Arman Aksoy
★ 1.2k
4
votes
3
replies
2.2k
views
News:
India Recently Started Personal Genome Profiling, Commercially.
genome-profiling
updated 13 months ago by
Ram
43k • written 10.9 years ago by
Naren
▴ 970
12
votes
3
replies
2.4k
views
News:
Google Summer of Code and Open Bioinformatics Foundation is looking for students
GSoC
open-source
updated 11 months ago by
Ram
43k • written 8.0 years ago by
Philipp Bayer
8.3k
3
votes
3
replies
2.1k
views
News:
Workshop: Berlin. Data manipulation and visualization with Python. 13-17 March (Registration deadline is today!!)
next-gen
RNA-Seq
genome
SNP
updated 11 months ago by
Ram
43k • written 7.2 years ago by
carlopecoraro2
★ 2.4k
4
votes
3
replies
3.3k
views
News:
CAFE v4.0 available
phylogenetics
CAFE
updated 10 months ago by
Ram
43k • written 7.0 years ago by
Ben Fulton
▴ 150
14
votes
3
replies
3.7k
views
News:
Updated: Conference/Symposium/Seminar/Workshop alert 2018-2019
seminar
symposium
conference
updated 10 months ago by
Ram
43k • written 5.9 years ago by
lakhujanivijay
5.8k
8
votes
3
replies
1.8k
views
News:
Impact of outdated gene annotations on pathway enrichment analysis
pathway-enrichment
gene-ontology
david
go
updated 11 months ago by
Ram
43k • written 7.5 years ago by
pld
5.1k
0
votes
3
replies
1.4k
views
News:
:: FINAL CALL :: A Practical Introduction to NGS Data Analysis (Nov 29 - Dec 1, 2023 in Munich, Germany) - only 2 seats left
DNA-Seq
NGS
RNA-Seq
Workshop
4 months ago by
David Langenberger
11k
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Comment: Number of CPUs to use by DRAP for transcriptomic assmbly
Comment: Gene reads all zero for each sample
Synthetic lethality and cancer database
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Comment: Error in openning FastQC
Comment: F*up Night style events for Bioinformatics ? Comment if you're interested!
Answer: F*up Night style events for Bioinformatics ? Comment if you're interested!
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Answer: Is RNAseq data from a monoclonal cell line technically considered scRNAseq?
by
Soheil
▴ 90
Bulk RNAseq from any sample is still considered a bulk sample. Running bulk RNA sequencing on a sample with any level of cell type/state c…
Comment: Is it reasonable to discard reads that show variation of quality across its leng
by
BRENO
• 0
Yikes. Well, this is from an Illumina MiniSeq. Sure, I will use alignment, but only to remove host reads. Then the remaining reads will go …
Comment: Is it reasonable to discard reads that show variation of quality across its leng
by
GenoMax
140k
This is going to be tough to diagnose. Are you going to align to a reference? If so go ahead with the alignments to see if alignments turn …
Comment: Is it reasonable to discard reads that show variation of quality across its leng
by
BRENO
• 0
Thank you for replying. I have separated the reads with at least one N on them and they account for 0.2% of the total reads in the file (8'…
Comment: Error running local blastn in R using system2
by
Mensur Dlakic
★ 26k
The `-db data/nt_euk` switch means that in your current directory you have a subdirectory called `data`, and all the `nt_euk` files are in …
Comment: Low number of both surviving reads after trimming
by
Jay
• 0
Thank you for your opinion. I will try with lower LEADING and TRAILING bases. By the way, I tried to set `keepBothReads:true` through sear…
Comment: Error in openning FastQC
by
GenoMax
140k
At this point it would be beneficial to learn some of the basics of command line. Please use this UNIX tutorial since you seem to be new to…
Comment: vcf file: number of samples does not match number of columns
by
Pierre Lindenbaum
160k
> ore or have any suggestions for fixing it? it's a problem with your upstream process. You'd better fix it.
Comment: Error in openning FastQC
by
friszd
• 0
after running fastqc -o output.html input.fastq, terminal returns: " Specified output directory 'output.html' does not exist " , when i run…
Comment: Is it reasonable to discard reads that show variation of quality across its leng
by
GenoMax
140k
The question you should be looking into is why the Q scores are dropping there? Are there `N` calls indicating some issue with that cycle?
Comment: Error in openning FastQC
by
GenoMax
140k
What is `ctrl+c ctrl+v`? You may actually be killing the running fastqc process. If you run `fastqc` interactively (like what was shown ab…
Comment: F*up Night style events for Bioinformatics ? Comment if you're interested!
by
Dave Carlson
★ 1.7k
Ugh. I've definitely done this one before as well. And was none too happy about it.
Comment: Error in openning FastQC
by
friszd
• 0
fastqc -o output.html input.fastq ctrl+c ctrl+v
Comment: Error running local blastn in R using system2
by
GenoMax
140k
What do you see if you `cat nt_euk.nal`? Do the number of pieces mentioned in that file match with what you locally have?
Comment: Low number of both surviving reads after trimming
by
GenoMax
140k
It is your data and if you want to do that it is up to you. You may be throwing away essentially good data (you should remove the nextera s…
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