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News: Course ONLINE - RNAseq data analysis with R and Bioconductor (15-19 June)
rna-seq R Bioconductor News
updated 2.7 years ago by ★ 1.3k • written 2.7 years ago by ★ 2.2k
31
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4
replies
6.0k
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News: Rosalind: A Novel Bioinformatics Education Platform
bioinformatics education News
10.4 years ago by phcompeau ▴ 310
4
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4
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1.5k
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News: 12th International Conference on Advancements in Bioinformatics and Drug Discovery
genome bioinformatics Computational Biology News
updated 4.3 years ago by ★ 1.9k • written 4.8 years ago by ▴ 20
8
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4
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1.5k
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News: supporting vg users on biostars
vg graph vgteam genome News variation
updated 7 weeks ago by 4.4k • written 3.4 years ago by ★ 2.3k
5
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4
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1.6k
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News: 2nd International Conference on Pediatric Oncology and Pediatric Medicine
gene News
updated 5.9 years ago by 125k • written 5.9 years ago by • 0
15
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4
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2.2k
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News: Call For Nominations: 2013 Benjamin Franklin Award
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updated 9.9 years ago by 33k • written 10.0 years ago by 152k
0
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4
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757
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News: Pan-Structural Variation hackathon in the Cloud!
sequencing SV Forum News
2.9 years ago by Medhat 9.5k
1
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4
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1.7k
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News: webserver of TCGA data www.tcgaportal.org
RNA-Seq gene rna-seq genome News
4.7 years ago by xushutan ▴ 40
3
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4
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1.7k
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News: OmicCircos was updated
R OmicCircos
updated 8 months ago by 37k • written 7.9 years ago by ▴ 50
10
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4
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569
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News: Good morning
good morning
updated 4 months ago by 96k • written 4 months ago by 84k
10
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4
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2.3k
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News: Ensembl 77 is out
ensembl
updated 12 months ago by 37k • written 8.3 years ago by 23k
15
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3
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6.3k
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News: Top Bioinformatics Contributions Of 2013
bioinformatics News
updated 9.0 years ago by 5.7k • written 9.2 years ago by ★ 1.1k
9
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3
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3.0k
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News: New Human Genome Assembly (Grch38) Released
human genome assembly News
9.1 years ago by Pierre Lindenbaum 152k
0
votes
3
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790
views
News: EMBO | EMBL Symposium: Seeing is Believing - Imaging the Molecular Processes of Life
image analysis News
4.2 years ago by EMBL Events • 0
0
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3
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374
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News: Nvidia Clara Parabricks is FREE for R&D
nvidia workflow gpu
updated 7 weeks ago by 2.6k • written 7 weeks ago by 152k
7
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3
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4.1k
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News: Pathway Commons 2 - Search And Visualize Public Biological Pathway Information. Single Point Of Access.
api cytoscape News
9.2 years ago by B. Arman Aksoy ★ 1.2k
0
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3
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2.5k
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News: Physalia-courses: 16S rRNA gene Metabarcoding Workshop
SNP gene rna-seq sequencing sequence News
4.3 years ago by carlopecoraro2 ★ 2.2k
12
votes
3
replies
2.1k
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News: Google Summer of Code and Open Bioinformatics Foundation is looking for students
open source job Forum News
updated 4.0 years ago by ▴ 10 • written 6.9 years ago by 7.7k
2
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3
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1.2k
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News: Bio-On-Magnetic-Beads (BOMB): Open platform for high-throughput nucleic acid extraction and manipulation
rna-seq rna extraction dna extraction Tool News
updated 4.4 years ago by 47k • written 4.4 years ago by ▴ 20
0
votes
3
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945
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News: Less Than One Month Remaining until the Submission Deadline for Phase 1 of the NCTR Indel Calling from Oncopanel Sequencing Data Challenge!
oncopanel indel-calling
updated 7 weeks ago by 37k • written 7 months ago by ▴ 10
6
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3
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2.1k
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News: Become a Professional Biinformatician in NGS, Microarray in very fair price. Register for ArrayGen training program as soon as possible to get good a…
RNA-Seq ChIP-Seq next-gen News
updated 6.0 years ago by 18k • written 6.0 years ago by • 0
3
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3
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2.0k
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News: Innocentive Challenge: Identify Organisms From A Stream Of Dna Sequences And Get $1,000,000
ngs News
updated 9.8 years ago by 96k • written 9.8 years ago by ▴ 830
4
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3
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2.9k
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News: CAFE v4.0 available
CAFE phylogenetics News
updated 3.3 years ago by • 0 • written 5.9 years ago by ▴ 140
20
votes
3
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2.3k
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News: Nature Comment: Core services: Reward bioinformaticians
career-path
updated 7 months ago by 37k • written 7.8 years ago by ★ 2.2k
0
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3
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1.4k
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News: M.Phil Program in Bioinformatics
News M.Phil
updated 16 months ago by 37k • written 7.3 years ago by • 0
5
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3
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1.8k
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News: Nhgri Meeting About Human Variation Analysis Live Streaming [Now Done]
exome next-gen variation News
10.4 years ago by Mary 11k
3
votes
3
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708
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News: Want to automate your NGS analyses and create reproducible/scalable pipelines? Join our hands-on Nextflow workshop!
nextflow NGS pipeline
9 months ago by David Langenberger 9.8k
2
votes
3
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278
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News: NCBI Comparative Genome Viewer now allows searches for genes across aligned assemblies
Browser NCBI Alignments Genome
7 weeks ago by PeterC_NCBI ▴ 180
7
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3
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1.4k
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News: New NCBI Datasets home and documentation pages provide easier access
ncbi gene SARS-CoV-2 genome
updated 21 months ago by 96k • written 21 months ago by ▴ 50
4
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3
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1.7k
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News: How the strengths of Lisp-family languages facilitate building complex and flexible bioinformatics applications
RNA-Seq ChIP-Seq News
6.1 years ago by Bohdan Khomtchouk ▴ 350
5
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3
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1.3k
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News: Bioinfo-Core Conference Call, October 17, 2017 (11 am EDT USA, local times around world)
bioinfo-core News
5.3 years ago by GenoMax 125k
2
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3
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1.4k
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News: GCCBOSC 2018: A Bioinformatics Community Conference Call for Abstracts
BOSC GCC Galaxy Community Conference News
5.0 years ago by Chris Fields ★ 2.2k
5
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3
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1.2k
views
News: Top GitHub repos for biomedicine
GitHub software open source News
4.1 years ago by field.cady ▴ 50
22
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3
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2.6k
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News: Biostar: 10,000 Question Milestone
News
updated 9.7 years ago by 9.5k • written 9.7 years ago by 96k
4
votes
3
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1.5k
views
News: Boston Genomics Hackathon (facilitated by NCBI)
RNA-Seq hackathon NCBI DNA-seq News
6.9 years ago by DCGenomics ▴ 320
1
vote
3
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874
views
News: 4th Berlin Summer School in NGS Data Analysis - October 5-9, 2020
NGS RNA-Seq DNA-Seq News
2.7 years ago by David Langenberger 9.8k
4
votes
3
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2.5k
views
News: -max_target_seqs 1 in NCBI standalone BLAST does not do what you think it does
software error blast News
updated 4.3 years ago by 102k • written 4.3 years ago by 11k
18
votes
3
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2.1k
views
News: LAST CALL: Next-Generation Sequencing Data Analysis: A Practical Introduction (Frankfurt, Germany) - 2 seats left
DNA-Seq NGS Workshop Variant-Calling
updated 6 months ago by 37k • written 5.9 years ago by 9.8k
0
votes
3
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2.1k
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News: Eukaryotic Metabarcoding workshop
blast alignment next-gen News
6.2 years ago by carlopecoraro2 ★ 2.2k
14
votes
3
replies
3.3k
views
News: Updated: Conference/Symposium/Seminar/Workshop alert 2018-2019
bioinformatics symposium seminar conference News
updated 4.3 years ago by ▴ 260 • written 4.7 years ago by 5.7k
0
votes
3
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2.0k
views
News: Bioinformatics National Certification Examination (BINC)
BINC EXAM News
updated 6.7 years ago by 23k • written 6.7 years ago by • 0
2
votes
3
replies
2.7k
views
News: Summer Course On Analyzing Next-Generation Sequencing Data, June 10-20, Kellog Biological Station, Michigan State University
education News
10.0 years ago by Istvan Albert 96k
9
votes
3
replies
4.3k
views
News: Bioinformatics Contest 2020. Call for problems
contest News
3.0 years ago by alserg ▴ 780
3
votes
3
replies
3.5k
views
News: A Tale Of Next Generation Sequencing Platforms: Ion Torrent, Pacific Biosciences And Illumina Miseq
sequencing News
10.4 years ago by Istvan Albert 96k
8
votes
3
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1.6k
views
News: Impact of outdated gene annotations on pathway enrichment analysis
david go ontology pathway enrichment News
6.4 years ago by pld 5.0k
7
votes
3
replies
3.5k
views
News: Visualizing genomic data: techniques and challenges. Our interview with Dr. Malachi Griffith, Dr. Obi Griffith and Mr. Zachary Skidmore (The Griffith…
RNA-Seq R NGSdata genome News
4.1 years ago by carlopecoraro2 ★ 2.2k
4
votes
3
replies
1.7k
views
News: Proteomics and Genomics Submit your Research Journals
Research Genomics Journals Proteomics
updated 9 weeks ago by 37k • written 7.6 years ago by • 0
0
votes
3
replies
422
views
News: NCBI BLAST ClusteredNR database now available for blastx and PSI-BLAST searches
PSI-BLAST blastx BLAST NCBI ClusteredNR
4 weeks ago by PeterC_NCBI ▴ 180
4
votes
3
replies
2.0k
views
News: India Recently Started Personal Genome Profiling, Commercially.
News
updated 9.7 years ago by 5.2k • written 9.7 years ago by ▴ 960
2
votes
3
replies
1.7k
views
News: PDX Models: Tumor-stroma interaction
ChIP-Seq R pdx transcriptome News
5.5 years ago by Pine Biotech ▴ 70
1,000 results • Page 3 of 20
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Deseq2 with one factor and multiple levels
Answer: Error while trying to install salmon
Answer: Forcing Installation Of DMRcate
Gene Expression Omnibus Data Mining (IA): Quick and easy download of GEO data
SNP calling
Comment: Annotating ENS codes to gene name
1000 genomes project reference panel - GRCh38
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Recent Replies
Comment: Network analysis for two Factors by seidel 10k
Have you looked at any tutorials? Three are many out there. ([1][1], [2][2], [3][3], [etc.][4]) Do you have a preferred language? [1]: …
Comment: ceres score in crispr screen by seidel 10k
Are you looking for moral support or technical support? Have you tried using it with an older version of R and bioconductor? (i.e. circa 20…
Comment: PLINK2 selecting variants based on INFO score by chrchang523 9.9k
If you aren't willing to provide more precise information than this, sufficient for a reader to reproduce what you're seeing, I will delete…
Answer: Error while trying to install salmon by Chris ▴ 10
Donwloading the package from conda (https://anaconda.org/conda-forge/boost/files?version=1.60.0) worked for me wget https://anaconda.org/…
Answer: finding error to run edgeR, error in ploting MDS and after that in model matrix by Gordon Smyth ★ 5.4k
First issue is that GEO series matrix files can't be read using `read.delim`. Second issue is the data are from Agilent microarrays and …
Comment: PLINK2 selecting variants based on INFO score by m.c.roozen • 0
I have tried that (the .pvar file contains the "1:10586" form as ID which I mentioned above) which leads to the same output as above, 0 var…
Answer: samtools markdup in Rsamtools by joe ▴ 350
You can run any system command from inside R using `system()`. This works well if there is a single command without many dependencies. For …
Comment: samtools markdup in Rsamtools by Pierre Lindenbaum 152k
> But other solutions are also fine: bash, nextflow, snakemake
Answer: samtools markdup in Rsamtools by ATpoint 68k
My honest opinion: Do processing of sequencing data on the standard command line with samtools. There is no need for the added complexity t…
Comment: To batch correct or analyse separately? by predeus ★ 1.8k
Another great and up-to-date resource is this: https://www.sc-best-practices.org/preamble.html
Comment: PLINK2 selecting variants based on INFO score by chrchang523 9.9k
The --exclude file must use the same variant IDs as your .pvar file. You should elaborate on what seemed to go wrong when you tried to arr…
Comment: phylogeny by 炫 • 0
Hello, my problem is the same as yours, did you finally solve this problem?
Comment: phylogeny by 炫 • 0
您好，我的问题和您的一模一样，请问您这个问题最终解决了吗
Comment: Issue with hmmcalibrate during tutorial. by apcreyes29 • 0
If that's the case then I'll just proceed then. Thank you!
Answer: To batch correct or analyse separately? by ATpoint 68k
Instead of writing that all down I recommend to read the relevant part of the Bioconductor scRNA-seq book (OSCA) which covers the "how's" a…
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