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896 results • Page
3 of 18
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News:
Squeezing biology out of statistics: Gene set and pathway analysis in HT data. Berlin, 11-15 March
R
RNA-Seq
next-gen
ChIP-Seq
updated 11 months ago by
Ram
43k • written 5.3 years ago by
carlopecoraro2
★ 2.5k
3
votes
1
reply
6.8k
views
News:
LinkedOmics - a web portal for TCGA/CPTAC data
TCGA
cptac
cancer
updated 11 months ago by
Ram
43k • written 6.4 years ago by
GenoMax
141k
3
votes
1
reply
835
views
News:
PrecisionFDA has won a FedHealth IT award!!
platform
cloud-based
precision-medicine
award
updated 10 months ago by
Ram
43k • written 4.9 years ago by
stephens_sarah
▴ 150
0
votes
1
reply
979
views
News:
Data visualization with Python
snp
next-gen
sequencing
updated 11 months ago by
Ram
43k • written 5.5 years ago by
carlopecoraro2
★ 2.5k
0
votes
1
reply
836
views
News:
FINAL CALL: Online Course - A Practical Introduction to NGS Data Analysis - October 23-25, 2023
DNA-seq
Workshop
RNA-seq
6 months ago by
David Langenberger
11k
0
votes
1
reply
931
views
News:
FINAL CALL: RNA-Seq Data Analysis Workshop (March 11 - 14, 2024 in Berlin, Germany)
NGS
RNA-Seq
Workshop
11 weeks ago by
David Langenberger
11k
3
votes
1
reply
1.5k
views
News:
Bioconductor 2017 Conference, Boston, July 26-28
R
conference
Bioconductor
updated 11 months ago by
Ram
43k • written 7.1 years ago by
Sean Davis
26k
0
votes
1
reply
1.8k
views
News:
Spatio-temporal Transcriptome of LncRNAs in Human Brain
Parkinson
lncRNA
Alzheimer
brain
transcriptome
updated 11 months ago by
Ram
43k • written 6.8 years ago by
lsp03yjh
▴ 860
0
votes
1
reply
1.5k
views
News:
Trinity Workshop: De novo Transcriptome Assembly, Annotation, and Downstream Expression Studies. Berlin 12-16 June (4 places left)
next-gen
Assembly
RNA-Seq
updated 11 months ago by
Ram
43k • written 7.1 years ago by
carlopecoraro2
★ 2.5k
2
votes
1
reply
457
views
News:
Successful NCBI NIAID Codeathon on VCF Files in SARS-CoV-2 Genomics
NCBI
Codeathon
updated 7 months ago by
chrchang523
10k • written 7 months ago by
PeterC_NCBI
▴ 410
4
votes
1
reply
1.2k
views
News:
Bioinformatics Workflows with Nextflow
Netflow
reproducibility
Workflows
updated 10 months ago by
Ram
43k • written 4.4 years ago by
carlopecoraro2
★ 2.5k
0
votes
1
reply
798
views
News:
LAST CALL: Online Course - A Practical Introduction to NGS Data Analysis (February 28 - March 1, 2024)
NGS
Online-Workshop
updated 3 months ago by
Ram
43k • written 3 months ago by
David Langenberger
11k
0
votes
1
reply
1.1k
views
News:
New Alexa skill provides voice-based access to Protein Data Bank data
protein-structure
pdb
updated 11 months ago by
Ram
43k • written 6.5 years ago by
gregorybquinn
• 0
2
votes
1
reply
872
views
News:
Gene set enrichment and pathway analysis in HT data
next-gen-sequencing
RNA-Seq
updated 11 months ago by
Ram
43k • written 5.2 years ago by
carlopecoraro2
★ 2.5k
2
votes
1
reply
1.6k
views
News:
BIOSG17 Workshop on High Throughput Computing in Bioinformatics/Biomedicine using OSG
Workshop
OSG
Biomedicine
HTC
updated 11 months ago by
Ram
43k • written 6.7 years ago by
natasha.pavlovikj
▴ 10
3
votes
1
reply
1.4k
views
News:
Ensembl in Google Summer of Code
Ensembl
Internship
Google-Summer-of-Code
GSOC
updated 11 months ago by
Ram
43k • written 7.1 years ago by
Emily
23k
1
vote
1
reply
1.9k
views
News:
Bioinformatics Contest 2017. Results
contest
updated 11 months ago by
Ram
43k • written 7.1 years ago by
pavlov.ivan095
▴ 70
0
votes
1
reply
306
views
News:
Reminder: NCBI ClinVar XML update to accommodate somatic variants coming Jan 29, 2024
SNP
XML
ClinVar
NCBI
3 months ago by
PeterC_NCBI
▴ 410
2
votes
1
reply
669
views
News:
NGS & Microarray Custom Data Analysis Training Program
next-gen-sequencing
RNA-Seq
ChIP-Seq
updated 10 months ago by
Ram
43k • written 4.8 years ago by
guddi
• 0
0
votes
1
reply
786
views
News:
Advanced R Programming Course
R
updated 11 months ago by
Ram
43k • written 6.0 years ago by
carlopecoraro2
★ 2.5k
0
votes
1
reply
720
views
News:
Our New Publication "Machine learning to support social media empowered patients in cancer care and cancer treatment decisions"
Machine-Learning
Health-Informatics
updated 11 months ago by
Ram
43k • written 5.5 years ago by
lmanohara99
▴ 20
0
votes
1
reply
366
views
News:
Course: Genome Assembly and Annotation
Biodiversity
Genome-Assembly
Genome-Annotation
Long-reads
updated 4 months ago by
Ram
43k • written 4 months ago by
carlopecoraro2
★ 2.5k
1
vote
1
reply
267
views
News:
EMBL Course Hands-on course for sample preparation and data analysis in proteomics
EMBLProteomics
updated 5 weeks ago by
dr.eldeib89
• 0 • written 10 weeks ago by
EMBL Events
▴ 10
0
votes
1
reply
1.4k
views
News:
Online Workshop - A Practical Introduction to NGS Data Analysis (May 27-29,2020)
NGS
DNA-seq
Workshop
updated 10 months ago by
Ram
43k • written 4.0 years ago by
David Langenberger
11k
0
votes
1
reply
1.4k
views
News:
Webinar on Leukocyte immunobiology by Dr. Mario Deng, Professor of Medicine, UCLA on 9 Aug 2017, 8am PST
UCLA
transcriptome-analysis
RNA-Seq
Strand-NGS
updated 11 months ago by
Ram
43k • written 6.8 years ago by
Genomics
▴ 70
4
votes
1
reply
1.8k
views
News:
Bioinformatics Contest 2018
contest
updated 11 months ago by
Ram
43k • written 6.3 years ago by
ksenya1.618
▴ 40
1
vote
1
reply
187
views
News:
Integrated Genome Browser (IGB) Office Hours
Integrated-Genome-Browser
IGB
updated 7 weeks ago by
Ram
43k • written 7 weeks ago by
IGB Helper
• 0
0
votes
1
reply
184
views
News:
Online NGS Training Program
next-gen-sequencing
RNA-Seq
ChIP-Seq
updated 10 months ago by
Ram
43k • written 4.8 years ago by
suvarna
• 0
0
votes
1
reply
609
views
News:
Bioinformatics Training Program
next-gen-sequencing
genome
RNA-Seq
updated 10 months ago by
Ram
43k • written 4.8 years ago by
guddi
• 0
3
votes
1
reply
1.4k
views
News:
GATK returns to a fully open-source license
gatk
updated 11 months ago by
Ram
43k • written 6.9 years ago by
Istvan Albert
100k
2
votes
1
reply
2.0k
views
News:
Genomic Data Visualization and Interpretation Workshop
next-gen
R
genome
RNA-Seq
updated 11 months ago by
Ram
43k • written 6.8 years ago by
carlopecoraro2
★ 2.5k
2
votes
1
reply
1.1k
views
News:
PrecisionFDA and NCI-CPTAC Mislabeling Challenge is Launching on September 24th!
precision-medicine
NCI
FDA
proteomics.RNA
updated 11 months ago by
Ram
43k • written 5.6 years ago by
stephens_sarah
▴ 150
6
votes
1
reply
2.9k
views
News:
"Oxford University Press to Publish NAR Genomics and Bioinformatics"
journal
updated 10 months ago by
Ram
43k • written 5.0 years ago by
Pierre Lindenbaum
161k
0
votes
1
reply
1.0k
views
News:
Help GIAB manually curate benchmark SVs!
giab
updated 11 months ago by
Ram
43k • written 5.9 years ago by
Pierre Lindenbaum
161k
0
votes
1
reply
1.6k
views
News:
Course: RADseq data analysis in Berlin (4-8/12/17). LAST CALL
STACKs
RADseq
updated 11 months ago by
Ram
43k • written 6.4 years ago by
carlopecoraro2
★ 2.5k
0
votes
1
reply
1.6k
views
News:
:: FINALL CALL :: RNA-Seq Data Analysis Workshop for Beginners - Registraion to be closed
NGS
RNA-Seq
Training
updated 10 months ago by
Ram
43k • written 4.4 years ago by
David Langenberger
11k
0
votes
1
reply
365
views
News:
Online Course - Genomic Prediction
Genomic-Prediction
Selective-Breeding
updated 3 months ago by
Ram
43k • written 3 months ago by
carlopecoraro2
★ 2.5k
0
votes
1
reply
581
views
News:
Getting started with R
R
updated 10 months ago by
Ram
43k • written 5.1 years ago by
carlopecoraro2
★ 2.5k
1
vote
1
reply
932
views
News:
Webinar on Extensive Assessment of Gene Fusion Detection, Prioritization, Annotation and Characterization on 11 March 2020
detection
webinar
RNA-Seq
gene-fusion
updated 10 months ago by
Ram
43k • written 4.2 years ago by
Strand NGS
▴ 40
3
votes
1
reply
2.3k
views
News:
NCBI : New API Keys for the E-utilities
pubmed
eutils
ncbi
api
updated 11 months ago by
Ram
43k • written 6.5 years ago by
Pierre Lindenbaum
161k
0
votes
1
reply
1.5k
views
News:
Symposium, Accelerating Biology 9-11, Jan, 2018 : Digitizing Life, Pune, India
symposium
NGS
updated 11 months ago by
Ram
43k • written 6.5 years ago by
lakhujanivijay
5.8k
1
vote
1
reply
1.7k
views
News:
Bioinformatics for Beginners @NIH, (Bethesda, MD, USA) Feb 13 - 16, 2018
beginners
training
updated 11 months ago by
Ram
43k • written 6.5 years ago by
AABI
▴ 140
3
votes
1
reply
1.2k
views
News:
UniProt: Change of FT and CC section in UniProtKB text format
uniprot
protein
updated 10 months ago by
Ram
43k • written 4.6 years ago by
Elisabeth Gasteiger
★ 2.4k
0
votes
1
reply
1.0k
views
News:
Google Summer of Code 2020 announced for mentor organisations
internship
GSoC
updated 10 months ago by
Ram
43k • written 4.4 years ago by
Emily
23k
1
vote
1
reply
1.7k
views
News:
2nd Berlin Summer School in NGS Data Analysis 2018
DNA-Seq
Workshop
NGS
RNA-Seq
updated 11 months ago by
Ram
43k • written 6.1 years ago by
David Langenberger
11k
6
votes
1
reply
1.0k
views
News:
uniprot.org is moving from HTTP to HTTPS
protein
database
uniprot
updated 11 months ago by
Ram
43k • written 6.3 years ago by
Elisabeth Gasteiger
★ 2.4k
0
votes
1
reply
2.3k
views
News:
Webinar on Unique Molecular Identifier (UMI)-powered Ultra-sensitive Variant Calling using Strand NGS - Case Study
Strand-NGS
NGS
RNA-Seq
UMI
dna-seq
updated 11 months ago by
Ram
43k • written 6.5 years ago by
Genomics
▴ 70
2
votes
1
reply
1.4k
views
News:
of the Galaxy: 17.05 Release, Galaxy Community Conference, and more
event
galaxy
paper
updated 11 months ago by
Ram
43k • written 6.9 years ago by
Dave Clements
▴ 610
0
votes
1
reply
613
views
News:
EMBL-EBI virtual course | Introduction to RNA-seq and functional interpretation
RNA-seq
updated 7 months ago by
Ram
43k • written 7 months ago by
Rebecca
• 0
0
votes
1
reply
1.1k
views
News:
Registration deadline: Comparative genomics
snp
SVs
updated 11 months ago by
Ram
43k • written 5.6 years ago by
carlopecoraro2
★ 2.5k
896 results • Page
3 of 18
Recent Votes
Comment: Correlation for ATAC-Seq and Chip-Seq
Answer: PDB residue serial inconsistency and PDB id&UniProt ID mismatch
Answer: PDB residue serial inconsistency and PDB id&UniProt ID mismatch
Answer: PDB residue serial inconsistency and PDB id&UniProt ID mismatch
Answer: PDB residue serial inconsistency and PDB id&UniProt ID mismatch
Comment: PDB residue serial inconsistency and PDB id&UniProt ID mismatch
Answer: What is the real meaning of relative enrichment/peak height of ChIP-seq tracks?
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Recent Replies
Comment: interpretartion of a vcf file
by
samuelkalandarov2002
▴ 10
Is it typical to observe such a profile in the context of diploid organism ?
Answer: Plots for DNA methylation data
by
Basti
★ 2.0k
Yes you can use ggplot2 to create your own plots from a table of results from a differential methylation analysis. You just need to adapt a…
Comment: Heatmap and rna-seq
by
Basti
★ 2.0k
This forum is not dedicated to this type of request, there are many online tutorials for creating heatmaps accessible with simple internet …
Answer: python file for coding potential calculator
by
atharvakarkare14
▴ 10
Download the CPC2 tool supported by python 3 from here [https://github.com/gao-lab/CPC2_standalone/releases/tag/v1.0.1][1]. Then follow …
Comment: Redirection of Duplicate PMIDs
by
LauferVA
4.2k
let me know the scope and scale of the request (e.g. I need to do this for every record in Pubmed) and can help
Comment: Redirection of Duplicate PMIDs
by
LauferVA
4.2k
how is this query itself originating?
Comment: Redirection of Duplicate PMIDs
by
dominickd
• 0
I was able to come up with a workaround using the requests library: import requests pmid = 30134295 url = 'https://pubmed.ncbi…
Comment: What is the real meaning of relative enrichment/peak height of ChIP-seq tracks?
by
HyperEvo
• 0
Thanks for you answer! Actually I have already filtered my peak according to blacklist by bedtools. You mean it's meaningless to compare on…
Answer: Redirection of Duplicate PMIDs
by
GenoMax
141k
More than likely not since the database query seems to work for the redirected PMID but not the original. $ esearch -db pubmed -query …
Comment: DYH17 Structure Prediction
by
anasjamshed
▴ 120
Blast showed PDB: 8J07_n9(human) as best template with 62.99%. I also used swissmodel to model the protein and it showed: https://swissmod…
Comment: How to slice a gvcf file with tabix?
by
Pierre Lindenbaum
161k
No, in haplotypecaller
Comment: How to slice a gvcf file with tabix?
by
Sd
• 0
Then what is the best way to do slicing for 1Mb windows? Doing `--intervals` in the GenomicsDBImport?
Comment: How to slice a gvcf file with tabix?
by
Pierre Lindenbaum
161k
> What is your suggestion to run GenomicsDBImport efficiently? call the GVCF by slices eg: chr1:1000000-2000000<br> run GenomicsDBImport …
Comment: How to slice a gvcf file with tabix?
by
Sd
• 0
I want to run gatk `GenomicsDBImport` tool to build a GenomicsDB. I want to slice it to reduce the computation time since I have 1300 gvcf …
Comment: Problem to remove subset of patients with plink
by
chrchang523
10k
The first step has to be taken outside of PLINK here. E.g. append "_1" and "_2" to the duplicated IDs in the .ped or .fam file, then menti…
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