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1,000 results • Page 3 of 20
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News: Clustered `nr` database is now available for web blast @NCBI
nr blast
updated 15 months ago by ★ 23k • written 16 months ago by 130k
8
votes
6
replies
3.7k
views
News: Last Call: Upcoming Workshop - Rna-Seq Bioinformatics: A Practical Introduction
RNA-seq
updated 3 months ago by 39k • written 10.4 years ago by 9.9k
8
votes
0
replies
1.8k
views
News: New MOOC: Algorithms for DNA Sequencing
alignment Assembly genomics mooc
updated 7 months ago by 39k • written 7.9 years ago by ▴ 80
8
votes
8
replies
2.3k
views
News: Coronavirus Genome Analysis: a new volume in the Biostar Handbook
biostar-handbook education
updated 2 days ago by 39k • written 3.3 years ago by 98k
8
votes
3
replies
1.6k
views
News: fastp 0.22 released, with new FASTQ deduplication feature.
fastp
updated 21 months ago by 130k • written 21 months ago by ★ 2.4k
8
votes
2
replies
2.1k
views
News: The bioinformatics chat is a new podcast about bioinformatics. In the first episode we discuss Scallop, a transcriptome assembler
podcast Assembly RNA-Seq
updated 29 days ago by 39k • written 6.2 years ago by ▴ 120
8
votes
0
replies
2.0k
views
News: A Call To Create Listings Of The Best Review Papers
papers
updated 3 months ago by 39k • written 10.8 years ago by 98k
8
votes
6
replies
1.2k
views
News: Illumina to Acquire Pacific Biosciences
pacbio illumina
updated 15 days ago by 39k • written 4.6 years ago by 98k
8
votes
6
replies
16k
views
News: Bioinformatics PhD Programs in the US
education PhD
updated 23 days ago by 39k • written 5.5 years ago by ▴ 70
8
votes
0
replies
1.1k
views
News: Final Call - Hands-On RNA-Seq Data Analysis Workshop - only 2 seats left
data-analysis RNA-Seq workshop
updated 8 days ago by 39k • written 3.9 years ago by 9.9k
8
votes
0
replies
2.6k
views
News: Plos Computational Biology: Translational Bioinformatics
publications plos
updated 3 months ago by 39k • written 10.3 years ago by 9.6k
8
votes
0
replies
1.7k
views
News: Upcoming Workshop: Introduction to R in Biology
workshop R
updated 8 weeks ago by 39k • written 6.3 years ago by 9.9k
8
votes
3
replies
1.6k
views
News: Impact of outdated gene annotations on pathway enrichment analysis
pathway-enrichment gene-ontology david go
updated 9 weeks ago by 39k • written 6.7 years ago by 5.1k
8
votes
1
reply
2.5k
views
News: An Interesting Article On Bioinformatics Education With Some Press For Biostar
meta biostars
updated 3 months ago by 39k • written 9.9 years ago by 11k
8
votes
4
replies
1.6k
views
News: supporting vg users on biostars
variation-graph genome vg vgteam
updated 7 days ago by 39k • written 3.7 years ago by ★ 2.4k
7
votes
1
reply
485
views
News: NGSymposium - Conference in Computational Biology, 23-24.09
ML statistics conference ngschool
12 months ago by kzkedzierska ▴ 290
7
votes
11
replies
1.6k
views
News: Bringing the power of Big Data to biomedical researchers
NGS biomedical-research
updated 25 days ago by 39k • written 5.8 years ago by ▴ 100
7
votes
1
reply
3.0k
views
News: A Multi-Split Mapping Algorithm For Circular Rna, Splicing, Trans-Splicing, And Fusion Detection
ngs mapping
updated 3 months ago by 39k • written 9.3 years ago by 9.9k
7
votes
3
replies
1.6k
views
News: New NCBI Datasets home and documentation pages provide easier access
ncbi gene SARS-CoV-2 genome
updated 2.1 years ago by 98k • written 2.1 years ago by ▴ 50
7
votes
0
replies
1.8k
views
News: CIViC Hackathon and Curation Jamboree at NGS in Molecular Pathology Meeting, NKI, Nov 30 - Dec 2
meeting civic hackathon NKI
updated 9 weeks ago by 39k • written 6.8 years ago by ▴ 290
7
votes
2
replies
2.1k
views
News: Annotation of Zebrafish pri-miRNAs promoters and CAGE-seq detected active Drosha processing events.
Drosha-processing moRNAs pri-miRNAs zebrafish
updated 10 months ago by 39k • written 7.5 years ago by ★ 2.3k
7
votes
1
reply
2.5k
views
News: Integrated Genome Browser version 8.3 released - new native installer
ChIP-Seq RNA-Seq igv igb
updated 14 months ago by 39k • written 8.4 years ago by ★ 2.3k
7
votes
8
replies
1.5k
views
News: A new Stack Exchange site for Research Computing
unix linux
updated 23 days ago by 39k • written 5.5 years ago by ▴ 690
7
votes
3
replies
3.6k
views
News: Visualizing genomic data: techniques and challenges. Our interview with Dr. Malachi Griffith, Dr. Obi Griffith and Mr. Zachary Skidmore (The Griffith…
R RNA-Seq genome NGSdata
updated 28 days ago by 39k • written 6.0 years ago by ★ 2.3k
7
votes
2
replies
2.1k
views
News: Upcoming Hands-On Workshop: microRNA Analysis Using Next-Generation Sequencing
NGS microRNA workshop
updated 9 weeks ago by 39k • written 7.0 years ago by 9.9k
7
votes
8
replies
3.8k
views
News: Next-Gen Sequencing Tutorials On Cubelp (Cranfield Bioinformatics Electronic Learning Platform)
genome chip-seq snp assembly
updated 8 months ago by 39k • written 9.8 years ago by ▴ 610
7
votes
0
replies
851
views
News: New layout for NCBI BLAST FTP database site starting February 4, 2020
ftp blast blast_index blast-plus
updated 2 days ago by 39k • written 3.4 years ago by 130k
7
votes
0
replies
2.7k
views
News: Correction for "A benchmark for RNA-seq quantification pipelines"
RNA-seq
updated 9 weeks ago by 39k • written 7.0 years ago by ▴ 70
7
votes
0
replies
1.4k
views
News: First PacBio Sequel data available
pacbio sequel
updated 9 weeks ago by 39k • written 6.7 years ago by 130k
7
votes
3
replies
4.2k
views
News: Pathway Commons 2 - Search And Visualize Public Biological Pathway Information. Single Point Of Access.
api cytoscape
updated 3 months ago by 39k • written 9.5 years ago by ★ 1.2k
7
votes
0
replies
3.0k
views
News: Ncbi E-Utilities Now Provides Output In Json Format (Einfo, Esearch, And Esummary Only, For Now)
ncbi format eutils entrez
updated 10 months ago by 39k • written 9.3 years ago by 155k
7
votes
0
replies
1.7k
views
News: Us Ethics Panel Reports On Dna Sequencing And Privacy
next-gen
updated 3 months ago by 39k • written 10.7 years ago by 11k
7
votes
4
replies
2.4k
views
News: Boston Ma Us Area Folks: Software Carpentry Workshop For Women In Science Coming Up
python training
updated 3 months ago by 39k • written 10.2 years ago by 11k
7
votes
5
replies
2.3k
views
News: Physalia-Course: Introduction to Linux and workflows for biologists (Berlin)
next-gen Unix Assembly alignment
updated 29 days ago by 39k • written 6.2 years ago by ★ 2.3k
6
votes
1
reply
900
views
News: uniprot.org is moving from HTTP to HTTPS
protein database uniprot
updated 22 days ago by 39k • written 5.5 years ago by ★ 2.2k
6
votes
2
replies
1.4k
views
News: Biostars On The Genome Technology Cover
biostars
updated 3 months ago by 39k • written 10.4 years ago by 98k
6
votes
1
reply
2.7k
views
News: GMOD Online Training 2014 coming up
galaxy chado gmod annotation
updated 3 months ago by 39k • written 9.2 years ago by 11k
6
votes
2
replies
1.6k
views
News: Belly Button Biodiversity Project Requests Your Analysis
biodiversity project
updated 3 months ago by 39k • written 10.6 years ago by 11k
6
votes
5
replies
4.8k
views
News: NCBI MagicBlast ( Short read mapper )
blast ncbi short-read mapper hts
updated 9 weeks ago by 39k • written 6.8 years ago by 155k
6
votes
2
replies
1.9k
views
News: RNA-Seq Data Analysis Workshop in Leipzig, Germany (09 - 12 October 2017)
NGS RNA-Seq workshop
updated 25 days ago by 39k • written 5.9 years ago by 9.9k
6
votes
0
replies
2.4k
views
News: http://crackingthebiocode.github.io : Profiles of Computational Biologists & Bioinformaticians
career
updated 3 months ago by 39k • written 8.7 years ago by 155k
6
votes
0
replies
2.5k
views
News: Broad Releases Fastg Multiple Seq Assembly Format
FASTG reference-format
updated 3 months ago by 39k • written 10.5 years ago by ★ 5.2k
6
votes
1
reply
2.4k
views
News: FastQC Version 0.11.1 released
genome next-gen-sequencing
updated 3 months ago by 39k • written 9.0 years ago by ★ 2.2k
6
votes
0
replies
1.3k
views
News: Now Live: precisionFDA Hidden Treasures - Warm Up Challenge
next-gen-sequencing
updated 25 days ago by 39k • written 5.9 years ago by ▴ 90
6
votes
1
reply
1.8k
views
News: Massively Differential Bias Between Two Widely Used Illumina Library Preparation Methods For Small Rna Sequencing
illumina RNA-seq
updated 3 months ago by 39k • written 9.5 years ago by 9.9k
6
votes
7
replies
4.9k
views
News: Illumina Nextseq 500 And Hiseq X Ten: Newer Tech Lowering Cost Per Mbp
Illumina
updated 3 months ago by 39k • written 9.4 years ago by ▴ 640
6
votes
0
replies
809
views
News: CWL user support moving to https://cwl.discourse.group/; many thanks to Biostars for over 4 years of support!
cwl thanks
updated 4 days ago by 39k • written 3.6 years ago by ★ 1.9k
6
votes
1
reply
1.8k
views
News: Contest: Antibody Marathon Match Problem: ABCSpeedup
contest
updated 12 weeks ago by 39k • written 8.4 years ago by 155k
6
votes
2
replies
2.4k
views
News: RNA-Seq Data Analysis Workshop in Berlin, Germany (full)
NGS RNA-Seq workshop
updated 8 weeks ago by 39k • written 6.5 years ago by 9.9k
6
votes
3
replies
2.2k
views
News: Become a Professional Biinformatician in NGS, Microarray in very fair price. Register for ArrayGen training program as soon as possible to get good a…
ChIP-Seq next-gen RNA-Seq
updated 8 weeks ago by 39k • written 6.4 years ago by • 0
1,000 results • Page 3 of 20
Recent Votes
Differences between trimming tools: cutadapt, bbduk and sickle
C: How sickle (adaptive trimming tool) work.
How sickle (adaptive trimming tool) work.
Comment: Help with running ATAC using Encode pipeline
Answer: Is there a file format better suited for the era of pangenomics than the .vcf? W
Answer: Is there a file format better suited for the era of pangenomics than the .vcf? W
A: Can EdgeR of DeSeq be used for Single-cell RNA-seq?
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Popular Question to kenneditodd ▴ 10
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Comment: GISTIC from ASCAT by Hyper_Odin ▴ 280
Also, I would like to add that we cannot use ASCAT output for GISTIC input...since GISTIC expects all the chromosomes in the input file eve…
Comment: GISTIC from ASCAT by Hyper_Odin ▴ 280
Hi, Ram thanks for the help...I figured out the issue. somehow I had duplicate files in the folder which caused the issue.
Answer: multiqc: group samples by population + boxplot ? by Phil Ewels ★ 1.2k
You can't group and make boxplots as you describe, probably your best bet is to use the [highlight tool][1] in the report (especially if yo…
Comment: Problem with GPU guppy_basecaller and SLURM by kenneditodd ▴ 10
Nope - but I just noticed another error message in the guppy log. I've seen some people have the same problem on nanopore community but not…
Comment: Where to get the molecular subtype information of STAD sample in TCGA by younglin113 ▴ 50
Thanks a lot! But still a bit curious why this information is not included in GDC or UCSC xena.
Comment: CellRanger problem by Carlos Eduardo • 0
I'm using cellranger mkref --genome=Viral --fasta=path.fna --genes=path.gtf I have 126G RAM
Comment: How do I run DE for TPM values (not CPM)? by John • 0
Thanks, but it's giving me the error that expression object should be numeric and that there are 2 non-numeric columns (because the first t…
Comment: How do I run DE for TPM values (not CPM)? by LChart 2.7k
you're mixing two packages, edgeR ("dgelist") and limma ("lmFit"). Just put your log(1+TPM) matrix as the first argument to lmFit.
Answer: hisat2-align exited with value 1 by GenoMax 130k
You only need to use the `basename` of the index when you specify it. Try hisat2 -p 4 -x /home/ngs/zebra_fish/zebra_fish -U SRR10480…
Comment: How to deal with SRA file without .SRA by Andy ▴ 50
Thank you Ram! Yes, I did something wrong.
Comment: Is there a file format better suited for the era of pangenomics than the .vcf? W by Ram 39k
Exactly. Even when we were trying to leverage hail at my previous job, we ran into troubles constantly with data freezes. IMO academia is n…
Comment: Is there a file format better suited for the era of pangenomics than the .vcf? W by Jeremy Leipzig 21k
OK hospitals in particular definitely don't want to regenerate anything as individual new samples are added to the variant store. Even the …
Comment: How to deal with SRA file without .SRA by Ram 39k
PRJNA is the standard NCBI BioProject prefix. There are 19 pairs of FASTQs associated with this one so you're doing something wrong
Comment: Is there a file format better suited for the era of pangenomics than the .vcf? W by Ram 39k
> But you can't live out of your suitcase forever. I'd compare it to a local department store vs Walmart - I think cloud/distributed stora…
Comment: How do I run DE for TPM values (not CPM)? by John • 0
That's what I'm trying to do but again, I'm getting an error on the last line and I'm asking how to fix it.
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