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26 results • Page
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4
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252
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News:
Standalone NCBI ClusteredNR database now available for download
ClusteredNR
NCBI
standalone
BLAST
20 days ago by
PeterC_NCBI
▴ 330
3
votes
5
replies
855
views
News:
Ensembl Release 104 and newer GTF files no longer have genes sorted by position
Ensembl
GTF
updated 13 days ago by
alejandrogzi
▴ 30 • written 10 months ago by
dlaehnemann
▴ 30
2
votes
1
reply
208
views
News:
Successful NCBI NIAID Codeathon on VCF Files in SARS-CoV-2 Genomics
NCBI
Codeathon
updated 1 day ago by
chrchang523
10k • written 4 days ago by
PeterC_NCBI
▴ 330
1
vote
0
replies
162
views
News:
Online Training - Bioinformatics Pipeline Development with Nextflow (November 15-17, 2023)
nextflow
automation
pipeline
development
4 days ago by
David Langenberger
10k
0
votes
0
replies
108
views
News:
Workshop on Virtual Screening on Drug Discovery from scratch (15-16 September, 2023 : 07.00 - 09.00 PM IST)
bioinformatics
screening
virtual
updated 13 days ago by
GenoMax
134k • written 14 days ago by
sriv.reetesh
• 0
0
votes
0
replies
130
views
News:
Course on Phylogenomics
Phylogenetic-Inference
Divergence-Time-Estimation
Genomics
Phylogenomics
updated 25 days ago by
Ram
40k • written 26 days ago by
carlopecoraro2
★ 2.3k
0
votes
0
replies
101
views
News:
RADseq data analysis course
RADseq
Phylogenomics
Bioinformatics
Populationgenomics
Stacks
2 days ago by
carlopecoraro2
★ 2.3k
0
votes
0
replies
137
views
News:
Course - GLMMs in R
GLMM
Mixed-Models
updated 7 days ago by
Ram
40k • written 7 days ago by
carlopecoraro2
★ 2.3k
0
votes
0
replies
64
views
News:
New NCBI Datasets APIs to Replace Old Ones
NCBI
API
Datasets
14 hours ago by
PeterC_NCBI
▴ 330
0
votes
0
replies
132
views
News:
Course: Data Manipulation and Visualisation with Python
Python
Data-Visualization
Data-Manipulation
updated 6 days ago by
Ram
40k • written 6 days ago by
carlopecoraro2
★ 2.3k
0
votes
2
replies
565
views
News:
The Practice of RADseq: Population Genomics Analysis with Stacks (RADS02) Early bird deadline approaching - 20th September
population-genomics
radseq
stacks
updated 6 days ago by
Dave Carlson
★ 1.4k • written 7 days ago by
oliverhooker
▴ 110
0
votes
0
replies
137
views
News:
Introduction to Nextflow (2 seats left)
Nextflow
Workflow
Reproducibility
updated 7 days ago by
Ram
40k • written 7 days ago by
carlopecoraro2
★ 2.3k
0
votes
0
replies
143
views
News:
Course - RNAseq in non-model organisms
R
RNAseq
DifferentialExpressionAnalysis
Bioconductor
16 days ago by
carlopecoraro2
★ 2.3k
0
votes
0
replies
140
views
News:
Introduction to Deep Learning for Biologists course
Python
Deep-Learning
Machine-Learning
updated 20 days ago by
Ram
40k • written 21 days ago by
carlopecoraro2
★ 2.3k
0
votes
0
replies
126
views
News:
Course - Reproducibility Data Analysis with R
R
renv
VersionControl
Reproducibility
21 days ago by
carlopecoraro2
★ 2.3k
0
votes
0
replies
195
views
News:
Online course: Easily analyze single cell RNA-seq data with Cellenics®, a user-friendly web-based platform
scRNA-seq
training
single-cell-RNA-seq
updated 24 days ago by
Ram
40k • written 25 days ago by
Sara
• 0
0
votes
0
replies
116
views
News:
RNAseq data analysis with R/Bioconductor
R
RNAseq
Bioconductor
14 days ago by
carlopecoraro2
★ 2.3k
0
votes
0
replies
131
views
News:
NCBI ClinVar XML update to accomodate somatic variants
SNP
NCBI
XML
ClinVar
13 days ago by
PeterC_NCBI
▴ 330
0
votes
0
replies
120
views
News:
course - Population Genomics Using Ancient DNA Data
Bioinformatics
PopulationGenomics
Genomics
aDNA
8 days ago by
carlopecoraro2
★ 2.3k
0
votes
0
replies
159
views
News:
Workshop - Single-Cell RNA-Seq Data Analysis: A Practical Introduction (November 8-10, 2023 in Berlin)
workshop
scRNA-Seq
RNA-Seq
single-cell
updated 4 days ago by
Ram
40k • written 5 days ago by
David Langenberger
10k
0
votes
0
replies
136
views
News:
Genomic Prediction course
Bioinformatics
GWAS
GenomicPrediction
8 days ago by
carlopecoraro2
★ 2.3k
0
votes
1
reply
213
views
News:
LAST CALL: Online Course - A Practical Introduction to NGS Data Analysis - October 23-25, 2023
DNA-seq
Workshop
RNA-seq
1 day ago by
David Langenberger
10k
0
votes
0
replies
249
views
News:
Join Our Online Course: Incorporating Paleogenomes into Evolutionary Genomics Studies
Paleogenomics
Genomics
aDNA
Adaptation-Genomics
updated 25 days ago by
Ram
40k • written 25 days ago by
carlopecoraro2
★ 2.3k
0
votes
0
replies
129
views
News:
Virtual Variant Detection Workshop: September 11-14, 2023
tutorial
detection
genomics
workshop
variant
20 days ago by
mia.nahom
▴ 10
0
votes
0
replies
154
views
News:
Research Breakthrough in Identifying Viral Escape Mutations for Improved Therapeutic Design
sequence-analysis
sars-cov-2
spike-protein
updated 4 days ago by
Ram
40k • written 5 days ago by
Prem
• 0
0
votes
1
reply
178
views
News:
EMBL-EBI virtual course | Introduction to RNA-seq and functional interpretation
RNA-seq
updated 3 days ago by
Ram
40k • written 3 days ago by
Rebecca
• 0
26 results • Page
1 of 1
Recent Votes
Comment: Calculation of TMB on gene level
Recommended way to normalize SmartSeq2 gene expression matrix to better match 10X expression data
Answer: Filter transcription factors
Comment: Quantification after transcriptome assembly with Trinity
Snakemake: output folder a as dependency to a different rule
A: Snakemake: output folder a as dependency to a different rule
A: In Seurat, How Do nCount_RNA Differ from nFeature_RNA?
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Recent Replies
Comment: bcftools error merging two VCFs: REF prefixes differ
by
iraun
6.1k
I can't find information with respect to the reference genome used to call the variants in `VCF_d`, but in `VCF_p` it seems they used GRCh3…
Comment: Calculation of TMB on gene level
by
smrutimayipanda
▴ 20
I am asking about TMB calculation on gene level, especially TCGA data
Comment: Calculation of TMB on gene level
by
smrutimayipanda
▴ 20
can you please tell me why it is technically incorrect?
Answer: Gene enrichment analysis of prokaryotes gene
by
dthorbur
▴ 550
[Here](https://github.com/golden75/prokaryote_RNASeq) is a tutorial on how to use the R package DESeq2 for prokaryotic RNAseq analyses. [H…
Comment: Read block operation failed with BAM file
by
John Marshall
3.0k
Indeed, though it is a seek issue when accessing files **over HTTP and other network protocols**. So, unless there's something you didn't m…
Comment: geom_signif() uses t-test to compare between more than 3 groups... Isn't this wr
by
RM123
▴ 10
Thank you for your help. I am comparing 4 groups, but as I have gene expression data I have a considerable number of boxplots to make. I fo…
Comment: gene correlations in between two groups
by
ATpoint
76k
And how should I know this? I cannot read minds, nor see your screen, data or anything. Please ask a good question with necessary details. …
Comment: gene correlations in between two groups
by
edus_bioinfo
▴ 40
Thanks. But they are already analyzed. Afaik it analyzes raw data. In my dataset for each gene there is score. I want to interpret the data…
Answer: GWAS phenotype
by
dthorbur
▴ 550
Hello again. Yes, you can conduct GWAS using binary trait data, but it comes with a whole suite of complications. See [this](https://ww…
Comment: geom_signif() uses t-test to compare between more than 3 groups... Isn't this wr
by
RM123
▴ 10
Hello Dariober, That seems like a good solution, however I'm pretty new to R. Could you tell me how I can do that?
Comment: how to create a loop in R
by
Nicolas Rosewick
10k
Not really a bioinformatics related question. Start by looking at R tutorial, there is plenty of them online e.g. : https://www.statmethods…
Comment: Violin plot (Monocle 3) - Troubleshooting
by
fracarb8
★ 1.2k
You did not add the screenshot.
Answer: BED files
by
Alex Reynolds
35k
Generically via `bedmap`: ``` bedmap --echo --echo-map --count exome.bed annotations.bed > answer.bed ``` The `annotations.bed` fil…
Comment: geom_signif() uses t-test to compare between more than 3 groups... Isn't this wr
by
dariober
14k
It seems to me that anova followed by HSD is a more sensible approach than applying independent t-tests. Granted this is the first time I s…
Comment: BED files
by
barslmn
★ 1.8k
I am guessing you want the annotation files. https://ftp.ncbi.nlm.nih.gov/refseq/H_sapiens/annotation/GRCh38_latest/refseq_identifiers/
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