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1,000 results • Page
4 of 20
Sort: Votes
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Votes
Replies
6
votes
0
replies
5.4k
views
News:
Game Changer? Illumina Nextseq 500
illumina
updated 13 months ago by
Ram
43k • written 10.3 years ago by
IV
★ 1.3k
6
votes
7
replies
2.2k
views
News:
NCBI wants to remove quality scores from SRA
quality-scores
trimming
Assembly
genome
SRA
updated 10 months ago by
Ram
43k • written 3.8 years ago by
zhousun21
▴ 40
6
votes
5
replies
5.3k
views
News:
NCBI MagicBlast ( Short read mapper )
blast
ncbi
short-read
mapper
hts
updated 12 months ago by
Ram
43k • written 7.6 years ago by
Pierre Lindenbaum
161k
6
votes
0
replies
2.7k
views
News:
New Methods Section In Plos Computational Biology
publications
plos
updated 14 months ago by
Ram
43k • written 11.1 years ago by
Casey Bergman
18k
6
votes
7
replies
4.2k
views
News:
New in DiffBind: dba.plotProfile() - Peak profiles and profile heatmaps
DiffBind
ChIP-seq
deepTools
visualization
ATAC-seq
19 months ago by
Rory Stark
★ 2.0k
6
votes
9
replies
4.2k
views
News:
1000 Genomes : The Initial Phase 3 variant list and phased genotypes.
1000genomes
updated 13 months ago by
Ram
43k • written 9.8 years ago by
Pierre Lindenbaum
161k
6
votes
0
replies
968
views
News:
CWL user support moving to https://cwl.discourse.group/; many thanks to Biostars for over 4 years of support!
cwl
thanks
updated 10 months ago by
Ram
43k • written 4.5 years ago by
Michael R. Crusoe
★ 1.9k
6
votes
1
reply
1.9k
views
News:
Massively Differential Bias Between Two Widely Used Illumina Library Preparation Methods For Small Rna Sequencing
illumina
RNA-seq
updated 13 months ago by
Ram
43k • written 10.3 years ago by
David Langenberger
11k
6
votes
0
replies
1.7k
views
News:
BOSC 2015 slides and videos
BOSC
BOSC2015
updated 18 months ago by
Ram
43k • written 8.8 years ago by
rtliu
★ 2.2k
6
votes
1
reply
3.0k
views
News:
The Art of Bioinformatics Scripting. A new book in the Biostar Handbook collection.
education
updated 3.6 years ago by
ghazala.bif.2k18
• 0 • written 4.4 years ago by
Istvan Albert
100k
6
votes
2
replies
2.3k
views
News:
Galaxy-specific Biostar Instance
galaxy
biostars
updated 14 months ago by
Ram
43k • written 10.0 years ago by
martenson
▴ 380
6
votes
0
replies
2.3k
views
News:
Bioinformatics internships with Google Summer of Code 2019
intern
Ensembl
GSOC
updated 11 months ago by
Ram
43k • written 5.2 years ago by
Emily
23k
6
votes
2
replies
1.1k
views
News:
Temporarily reduced functionality of Ensembl and Ensembl Genomes
Ensembl
updated 11 months ago by
Ram
43k • written 5.2 years ago by
Ben_Ensembl
★ 2.4k
6
votes
1
reply
2.9k
views
News:
GMOD Online Training 2014 coming up
galaxy
chado
gmod
annotation
updated 13 months ago by
Ram
43k • written 10.0 years ago by
Mary
11k
6
votes
3
replies
2.4k
views
News:
Become a Professional Biinformatician in NGS, Microarray in very fair price. Register for ArrayGen training program as soon as possible to get good a…
ChIP-Seq
next-gen
RNA-Seq
updated 12 months ago by
Ram
43k • written 7.2 years ago by
Seema
• 0
6
votes
2
replies
2.1k
views
News:
RNA-Seq Data Analysis Workshop in Leipzig, Germany (09 - 12 October 2017)
NGS
RNA-Seq
workshop
updated 11 months ago by
Ram
43k • written 6.8 years ago by
David Langenberger
11k
6
votes
2
replies
2.6k
views
News:
RNA-Seq Data Analysis Workshop in Berlin, Germany (full)
NGS
RNA-Seq
workshop
updated 12 months ago by
Ram
43k • written 7.4 years ago by
David Langenberger
11k
6
votes
1
reply
1.9k
views
News:
Are protein domains indivisible?
Athropy
Domains
Proteins
updated 13 months ago by
Ram
43k • written 8.9 years ago by
Deepak Tanwar
★ 4.2k
6
votes
0
replies
2.8k
views
News:
Broad Releases Fastg Multiple Seq Assembly Format
FASTG
reference-format
updated 14 months ago by
Ram
43k • written 11.4 years ago by
William
★ 5.3k
6
votes
2
replies
1.8k
views
News:
Belly Button Biodiversity Project Requests Your Analysis
biodiversity
project
updated 14 months ago by
Ram
43k • written 11.4 years ago by
Mary
11k
6
votes
0
replies
1.9k
views
News:
Bioinformatics Contest 2017
contest
updated 12 months ago by
Ram
43k • written 7.3 years ago by
pavlov.ivan095
▴ 70
6
votes
4
replies
1.3k
views
News:
Course online - Comparative Genomics
assembly
genome
next-gen
alignment
updated 10 months ago by
Ram
43k • written 4.0 years ago by
carlopecoraro2
★ 2.5k
6
votes
1
reply
2.9k
views
News:
"Oxford University Press to Publish NAR Genomics and Bioinformatics"
journal
updated 11 months ago by
Ram
43k • written 5.0 years ago by
Pierre Lindenbaum
161k
6
votes
1
reply
3.6k
views
News:
Symposium And Rna-Seq Data Analysis Workshop Charlotte May 13-14
RNA
RNA-seq
training
updated 13 months ago by
Ram
43k • written 10.1 years ago by
Ann
★ 2.4k
6
votes
0
replies
1.5k
views
News:
Now Live: precisionFDA Hidden Treasures - Warm Up Challenge
next-gen-sequencing
updated 11 months ago by
Ram
43k • written 6.8 years ago by
patriciareneecarter
▴ 90
6
votes
13
replies
2.1k
views
News:
Ensembl reduced functionality: 10th March-16th April 2020
BLAT
VEP
Ensembl
service
updated 10 months ago by
Ram
43k • written 4.2 years ago by
Ben_Ensembl
★ 2.4k
6
votes
4
replies
4.2k
views
News:
awesome-single-cell: a list of open-source single-cell analysis software and workshop materials
single-cell
RNA-Seq
updated 12 months ago by
Ram
43k • written 7.8 years ago by
Sean Davis
26k
5
votes
2
replies
3.7k
views
News:
Tuesday 10/29 Live Tour Of New Features In Integrated Genome Browser 8
genome-browser
RNA-seq
ChIP-seq
updated 14 months ago by
Ram
43k • written 10.5 years ago by
Ann
★ 2.4k
5
votes
3
replies
902
views
News:
March 13-16: Virtual Nextflow and nf-core training event in 5 languages
nf-core
pipeline
Nextflow
updated 13 months ago by
Maxime Garcia
▴ 340 • written 14 months ago by
Matthias Zepper
4.5k
5
votes
1
reply
2.3k
views
News:
New version of the GATB library
minia
next-gen
gatb
dsk
updated 2.2 years ago by
Ram
43k • written 9.2 years ago by
edrezen
▴ 730
5
votes
4
replies
1.9k
views
News:
2nd International Conference on Pediatric Oncology and Pediatric Medicine
gene
updated 12 months ago by
Ram
43k • written 7.1 years ago by
pediatriconcology
• 0
5
votes
0
replies
1.8k
views
News:
The future of the postdoc
sequencing
Postdoc
updated 22 months ago by
Ram
43k • written 9.0 years ago by
HG
★ 1.2k
5
votes
1
reply
1.1k
views
News:
New biostar-tools metaport for FreeBSD
freebsd
software
2.6 years ago by
bacon4000
▴ 80
5
votes
0
replies
1.3k
views
News:
NCBI Switching to https!
ncbi
api
updated 12 months ago by
Ram
43k • written 7.6 years ago by
DCGenomics
▴ 330
5
votes
0
replies
941
views
News:
sharing BiocWorkshops 2018
limma
edgeR
DESeq2
RNA-seq
glimma
updated 11 months ago by
Ram
43k • written 5.7 years ago by
Bogdan
★ 1.4k
5
votes
1
reply
2.6k
views
News:
Advanced Course: R programming and development 15-16. January 2015 (Thursday-Friday), EMBL Heidelberg
programming
course
R
updated 13 months ago by
Ram
43k • written 9.5 years ago by
Laurent
★ 1.7k
5
votes
1
reply
1.6k
views
News:
2-day WORKSHOP on SNAKEMAKE
next-gen
updated 11 months ago by
Ram
43k • written 5.9 years ago by
carlopecoraro2
★ 2.5k
5
votes
0
replies
1.8k
views
News:
Bioinformatics Contest 2019
bioinforussia
bioinfcontest
bioinfcontest2019
updated 11 months ago by
Ram
43k • written 5.4 years ago by
dashabalashova
▴ 50
5
votes
0
replies
3.1k
views
News:
Penn State now offers an Online Graduate Certificate: Applied Bioinformatics
bioinformatics-education
updated 13 months ago by
Ram
43k • written 9.7 years ago by
Istvan Albert
100k
5
votes
3
replies
1.5k
views
News:
Bioinfo-Core Conference Call, October 17, 2017 (11 am EDT USA, local times around world)
bioinfo-core
updated 13 months ago by
Ram
43k • written 6.7 years ago by
GenoMax
141k
5
votes
2
replies
1.7k
views
News:
#scRNABIO & organoids meeting
single-cell-sequencing
microfluidics
organoids
updated 11 months ago by
Ram
43k • written 5.7 years ago by
aln
▴ 320
5
votes
0
replies
2.0k
views
News:
Ebi Rdf Platform Launched Today
EBI
updated 14 months ago by
Ram
43k • written 10.6 years ago by
Pierre Lindenbaum
161k
5
votes
3
replies
2.1k
views
News:
Nhgri Meeting About Human Variation Analysis Live Streaming [Now Done]
next-gen
exome
variation
updated 14 months ago by
Ram
43k • written 11.6 years ago by
Mary
11k
5
votes
1
reply
1.2k
views
News:
Paid opportunity: need microbiome experts for a survey and test of robustness
survey
updated 14 months ago by
Ram
43k • written 3.5 years ago by
Jeremy Leipzig
22k
5
votes
1
reply
2.8k
views
News:
Canadian Bioinformatics Workshops Series Announced For 2014
training
updated 13 months ago by
Ram
43k • written 10.4 years ago by
Obi Griffith
20k
5
votes
2
replies
921
views
News:
The precisionFDA BioCompute Object App-a-thon has been extended to October 18!
BioCompute
challenge
updated 10 months ago by
Ram
43k • written 4.8 years ago by
hollystephens723
▴ 70
5
votes
0
replies
1.3k
views
News:
Bioconductor 2015 conference live tweeting and materials
bioconductor
R
updated 13 months ago by
Ram
43k • written 8.8 years ago by
Sean Davis
26k
5
votes
0
replies
1.6k
views
News:
New Bioconductor F1000Research Channel for publishing Bioconductor workflows
bioconductor
reproducible-research
updated 13 months ago by
Ram
43k • written 8.8 years ago by
Sean Davis
26k
5
votes
1
reply
3.5k
views
News:
Broad Gatk Haplotypecaller Speed Improved 2-4 X By Cooperation With Intel, And Incremental Multi-Sample Calling Made Possible!
gatk
variant-calling
updated 13 months ago by
Ram
43k • written 10.1 years ago by
William
★ 5.3k
5
votes
0
replies
1.5k
views
News:
Bioinformatics in Google Summer of Code 2018
Ensembl
GSOC
updated 11 months ago by
Ram
43k • written 6.2 years ago by
Emily
23k
1,000 results • Page
4 of 20
Recent Votes
Comment: downloading genomes in fasta format from accession ids
Comment: PCA plot (Suggestions Needed)
Answer: PCA plot (Suggestions Needed)
PCA plot (Suggestions Needed)
Comment: To get p-values for the TPM
A: Where To Download Pam50 Gene Set?
A: Where To Download Pam50 Gene Set?
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Recent Replies
Comment: Adding CB tag to bam file
by
swbarnes2
14k
I think both these programs are just adding the same tag to every line. I don't think either cares whether it's called RG or CB
Comment: PCA plot (Suggestions Needed)
by
swbarnes2
14k
Even if this was real data, the tiny numbers for the PC1 and PC2 indicate that the differences between the samples are all absolutely tiny.…
Comment: Creating Synthetic Sequences for a ML Model
by
biochugs
• 0
Thanks for the input. I'll continue to think of more ideas that may be achievable.
Comment: PCA plot (Suggestions Needed)
by
Jeremy
▴ 890
You could also try kernel PCA, which is a non-linear form of PCA, although this will be more time-consuming.
Comment: Troubleshooting RNA-seq data with DNA contamination
by
DKA
▴ 40
I have unstranded RNA-seq data. Please share the tool with me, if you do not mind.
Comment: PCA plot (Suggestions Needed)
by
Mensur Dlakic
★ 27k
Everything that @f1f58aed said, plus that there may be no data manipulation that will give you the clusters you expected. Sometimes there a…
Answer: Creating Synthetic Sequences for a ML Model
by
Mensur Dlakic
★ 27k
It is a good idea, though I don't see how it would work in practice. I think you will encounter at least one additional problem on top of …
Answer: PCA plot (Suggestions Needed)
by
Jeremy
▴ 890
Right now, the WT samples are clustering together, but you have one mutant sample off by itself, which could be an outlier. How did you sc…
Comment: Adding CB tag to bam file
by
GenoMax
141k
@yokofakun had written this: https://www.biostars.org/p/336965/ https://github.com/ruqianl/appendCB may also be useful.
Comment: Troubleshooting RNA-seq data with DNA contamination
by
GenoMax
141k
Please post information about your tool as a `tools` category post. Don't wait/ask other users to ask you.
Comment: Adding CB tag to bam file
by
Maria
• 0
Sorry for the delay in my answer, I got sidetracked. I am using ```samtools addreplacerg -r "@RG\tID:$cell" -o $cell.bam -h $LINE``` bu…
Answer: Troubleshooting RNA-seq data with DNA contamination
by
haibol2017
▴ 10
We just developed a R package to tackle this problem. Do you have stranded or unstranded RNA-seq data contaminated with gDNA? If you wou…
Comment: How to trim transcripts using information from NCBI contamination screen report
by
GenoMax
141k
`bbduk.sh` can use the transcripts as input. There is a `adapters.fa` included in the `resources` directory of the distribution. You can do…
Comment: PCA plot (Suggestions Needed)
by
swbarnes2
14k
Cross posted here (including the code used to make up the counts): https://support.bioconductor.org/p/9157911/#9157959
Comment: To get p-values for the TPM
by
swbarnes2
14k
RSEM returns a kind of p-value if you run it with the "prior-enhanced" option. Did you do that? Are you completely sure that's the value y…
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