4 days ago by
PeterC_NCBI
▴
330
0
votes
0
replies
109
views
0
votes
1
reply
240
views
0
votes
0
replies
113
views
6 days ago by
carlopecoraro2
★
2.4k
0
votes
1
reply
188
views
1
vote
0
replies
168
views
2
votes
1
reply
222
views
updated 5 days ago by
chrchang523
10k
•
written 8 days ago by
PeterC_NCBI
▴
330
0
votes
0
replies
167
views
updated 8 days ago by
Ram
40k
•
written 9 days ago by
David Langenberger
10k
0
votes
0
replies
157
views
0
votes
0
replies
141
views
updated 10 days ago by
Ram
40k
•
written 10 days ago by
carlopecoraro2
★
2.4k
0
votes
2
replies
579
views
updated 10 days ago by
Dave Carlson
★
1.4k
•
written 11 days ago by
oliverhooker
▴
110
0
votes
0
replies
141
views
News:
Course - GLMMs in R
updated 11 days ago by
Ram
40k
•
written 11 days ago by
carlopecoraro2
★
2.4k
0
votes
0
replies
143
views
updated 11 days ago by
Ram
40k
•
written 11 days ago by
carlopecoraro2
★
2.4k
0
votes
0
replies
145
views
12 days ago by
carlopecoraro2
★
2.4k
0
votes
0
replies
126
views
12 days ago by
carlopecoraro2
★
2.4k
3
votes
5
replies
864
views
updated 17 days ago by
alejandrogzi
▴
30
•
written 10 months ago by
dlaehnemann
▴
30
0
votes
0
replies
138
views
17 days ago by
PeterC_NCBI
▴
330
0
votes
0
replies
114
views
updated 17 days ago by
GenoMax
134k
•
written 18 days ago by
sriv.reetesh
•
0
0
votes
0
replies
122
views
18 days ago by
carlopecoraro2
★
2.4k
0
votes
0
replies
147
views
20 days ago by
carlopecoraro2
★
2.4k
4
votes
2
replies
263
views
24 days ago by
PeterC_NCBI
▴
330
0
votes
0
replies
134
views
0
votes
0
replies
146
views
updated 24 days ago by
Ram
40k
•
written 25 days ago by
carlopecoraro2
★
2.4k
0
votes
0
replies
131
views
25 days ago by
carlopecoraro2
★
2.4k
0
votes
0
replies
206
views
0
votes
0
replies
260
views
updated 29 days ago by
Ram
40k
•
written 29 days ago by
carlopecoraro2
★
2.4k
0
votes
0
replies
136
views
News:
Course on Phylogenomics
updated 29 days ago by
Ram
40k
•
written 4 weeks ago by
carlopecoraro2
★
2.4k
Recent Votes
Recent Locations •
All
UK, 3 minutes ago
China, 5 minutes ago
Hong Kong, 12 minutes ago
New Zealand, 13 minutes ago
Tel Aviv, 16 minutes ago
Norway, 16 minutes ago
India, 28 minutes ago
Recent Awards •
All
Popular Question to
iislam
•
0
Popular Question to
dukecomeback
▴
40
Popular Question to
Sandhiya
▴
20
Popular Question to
marongiu.luigi
▴
690
Recent Replies
Comment: Subclustering of intergated cells from scRNA-seq data
by
fifty_fifty
▴
60
thank you. This is exactly what I was looking for
Answer: Search RCSB with a list of protein names?
by
Mensur Dlakic
★
25k
This is not the most elegant solution, but it should work with previous suggestions.
In this remote directory:
http://ftp.wwpdb.org/p…
Answer: Automate the Splitting of a VCF File by Sample (bcftools)
by
Ram
40k
The manual says you can split samples out at once using the `+split` plugin. So, `bcftools +split -Oz -o <PATH> file.vcf.gz` should do the …
Comment: differences between trajectories in conditions with Monocle3 or other tools
by
Amitm
★
2.2k
Phate (or Monocle) doesn't do UMAP. If you have done UMAP already (using seurat) then you could use the cell barcode to UMAP cluster label …
Comment: Error: cannot open file 2 for reading From Cufflinks Version 2.2.1 When Attempti
by
Y
•
0
I figured out how to make it work. The bams have to be comma separated not just by space:
cd "${input_directory_with_associated_bam_fi…
Comment: Search RCSB with a list of protein names?
by
Joseph
•
0
Hey, this is so close to what I'm looking for - I clarified in my edit. This is a great way to batch download lots of PDBs in RCSB by their…
Comment: Search RCSB with a list of protein names?
by
Joseph
•
0
This is a really neat package, but I don't think it does exactly what I want, so I've clarified my question. This seems like it grabs a PD…
Comment: How to get the gft file to run velocyto for velocity analysis?
by
Chris
▴
200
Yes, thank you! I figured it out but I got an error:
velocyto run10x -m Hg38_rmsk.gtf WT/outs /cellranger/reference/refdata-cellranger…
Comment: How to get the gft file to run velocyto for velocity analysis?
by
bk11
★
1.3k
You can get from here- [UCSC][1]. Just click on get output botton.
[1]: https://genome.ucsc.edu/cgi-bin/hgTables?hgsid=611454127_NtvlaW…
Answer: Search RCSB with a list of protein names?
by
bk11
★
1.3k
You can use `Bio3D` an R Package for this.
[http://thegrantlab.org/bio3d_v2/tutorials/installing-bio3d][1]
[http://thegrantlab.org/b…
Comment: Search RCSB with a list of protein names?
by
GenoMax
134k
You can download various types of bulk data files from RCSB here: https://www.rcsb.org/docs/programmatic-access/file-download-services
You…
Comment: How to perform hypothesis testing on contingency tables and compare with the nul
by
RK
•
0
Thank you so much
Comment: How to perform hypothesis testing on contingency tables and compare with the nul
by
Jean-Karim Heriche
26k
So just do a regular chi-squared test as I explained above. The null hypothesis is that there are as many mutated/unmutated trinucleotides …
Comment: biomaRT doesn't report uniprot id
by
Ram
40k
A couple of notes:
1. It's biomaRt, not biomaRT
2. It's ensembl as in ensEMBL, not the word ensemble.
I've fixed those for you but please…
Comment: QC of genetic data
by
bk11
★
1.3k
> Would the SNPs on chromosome 0 and 26 be removed from the genetic file
> or left in.
Yes, you can leave out chr26 and chr0.
> I have s…
Traffic: 1423 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6