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News: Gene Set Enrichment Analysis in R workshop
GSE
11 months ago by carlopecoraro2 ★ 2.3k
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252
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News: Conservation Genomics Workshop
ConservationGenomics
11 months ago by carlopecoraro2 ★ 2.3k
0
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0
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270
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News: A webinar about Harmony batch correction, by its author
scrna-seq single-cell rna-seq
11 months ago by Jennifer Pham ▴ 450
0
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1
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2.1k
views
News: Nature Index: Novogene is teaming up with laboratories worldwide for life sciences and human health research
NGS Nature Sequencing
updated 3 months ago by 38k • written 12 months ago by ▴ 240
1
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0
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268
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News: Reproducibility in Bioinformatics Workshop
Reproducibility
updated 3 months ago by 38k • written 12 months ago by ★ 2.3k
0
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0
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259
views
News: Cellosaurus release 41 is available
knowledgebase biocuration cell-line
updated 6 weeks ago by 38k • written 12 months ago by ▴ 110
1
vote
0
replies
391
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News: :: LAST CALL :: Bioinformatics Pipeline Development with Nextflow (April 4-7, 2022)
NGS Pipeline-Development Nextflow
updated 3 months ago by 38k • written 12 months ago by 9.9k
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0
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339
views
News: Cellosaurus release 40 is available
knowledgebase cell-line
updated 6 weeks ago by 38k • written 15 months ago by ▴ 110
0
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0
replies
305
views
News: Bioinformatics Analysis
Transcriptome genome data-analysis
updated 6 weeks ago by 38k • written 16 months ago by • 0
0
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0
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349
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News: Bioinformatics
metagenomics metatranscriptomics
updated 6 weeks ago by 38k • written 16 months ago by • 0
0
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0
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349
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News: UC Davis Bioinformatics Core Workshops
data-analysis
updated 6 weeks ago by 38k • written 16 months ago by • 0
0
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0
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441
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News: Metagenomics and Metatranscriptomics Workshop!
metagenomics metatranscriptomics
updated 6 weeks ago by 38k • written 16 months ago by • 0
0
votes
0
replies
590
views
News: UC Davis Bioinformatics Core Workshops
Workshops UC-Davis
updated 6 weeks ago by 38k • written 16 months ago by • 0
1
vote
1
reply
474
views
News: QC for Next Generation Sequencing
NGS QC
updated 16 days ago by 38k • written 17 months ago by • 0
0
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0
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456
views
News: Cellosaurus release 39 is available
knowledgebase cell-line
updated 6 weeks ago by 38k • written 18 months ago by ▴ 110
0
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0
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556
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News: FINAL CALL :: Online Course - A Practical Introduction to NGS Data Analysis (July 14-16, 2021)
NGS workshop
updated 8 days ago by 38k • written 21 months ago by 9.9k
0
votes
0
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450
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News: Cellosaurus release 38 is available
knowledgebase cell-line
updated 6 weeks ago by 38k • written 22 months ago by ▴ 110
0
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1
reply
1.0k
views
News: 5th Berlin Summer School in NGS Data Analysis 2021 (October 4-8)
DNA-Seq Workshop RNA-Seq NGS
updated 6 weeks ago by 38k • written 2.1 years ago by 9.9k
5
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0
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974
views
News: Bioinformatics Contest 2021
bioinfcontest contest bioinforussia
updated 6 weeks ago by 38k • written 23 months ago by ▴ 50
0
votes
0
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538
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News: Introduction to Deep Learning
Machine-Learning Deep-Learning Python
updated 6 weeks ago by 38k • written 2.0 years ago by ★ 2.3k
0
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0
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588
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News: Learn how to do modern reproducible data science
Snakemake Workflows Nextflow
updated 6 weeks ago by 38k • written 2.0 years ago by ★ 2.3k
0
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0
replies
481
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News: Noncoding RNA conference (including bioinformatics)
conference RNA noncoding-RNA
updated 6 weeks ago by 38k • written 2.0 years ago by ▴ 20
0
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0
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525
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News: Spring Bioinformatics Courses @ Edinburgh Genomics
metagenomics RNA-Seq SNP training
updated 6 weeks ago by 38k • written 2.0 years ago by ▴ 40
0
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1
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868
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News: Results are now Available for the precisionFDA Truth Challenge V2
genome
updated 6 weeks ago by 38k • written 2.6 years ago by ▴ 150
1
vote
0
replies
613
views
News: Online Training - Analysis of Transposable elements
genome assembly sequence
updated 6 weeks ago by 38k • written 2.1 years ago by ★ 2.3k
0
votes
0
replies
517
views
News: Three x 2day online Python courses
Python
updated 6 weeks ago by 38k • written 2.1 years ago by ▴ 60
0
votes
0
replies
525
views
News: Nine x 2day online R courses
R
updated 6 weeks ago by 38k • written 2.1 years ago by ▴ 60
3
votes
0
replies
571
views
News: Free Ensembl Browser and REST API virtual workshops in March
Ensembl REST-API genome-browser training workshop
updated 6 weeks ago by 38k • written 2.1 years ago by ▴ 270
5
votes
1
reply
987
views
News: Paid opportunity: need microbiome experts for a survey and test of robustness
survey
updated 6 weeks ago by 38k • written 2.4 years ago by 21k
0
votes
1
reply
606
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News: The NCBI Datasets command-line tool now provides ortholog data
ncbi gene json refseq
updated 6 weeks ago by 38k • written 2.1 years ago by ▴ 50
1
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0
replies
1.2k
views
News: 3-day ONLINE TRAINING - NEXTFLOW
workflow Nextflow
updated 6 weeks ago by 38k • written 2.1 years ago by ★ 2.3k
0
votes
0
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645
views
News: ONLINE training - Single-cell RNA-seq analysis with R/Bioconductor. 07-11 June
Bioconductor RNA-Seq Single-Cell R
updated 6 weeks ago by 38k • written 2.1 years ago by ★ 2.3k
3
votes
0
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859
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News: Online training - Unix and shell scripting for bioinformatics
Linux scripting Unix
updated 6 weeks ago by 38k • written 2.2 years ago by ★ 2.3k
0
votes
0
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630
views
News: Cellosaurus release 37 is available
knowledgebase cell-line
updated 6 weeks ago by 38k • written 2.2 years ago by ▴ 110
1
vote
1
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741
views
News: ONLINE TRAINING -GENOME ASSEMBLY USING OXFORD NANOPORE SEQUENCING
genome assembly Nanopore
updated 6 weeks ago by 38k • written 2.2 years ago by ★ 2.3k
0
votes
0
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935
views
News: DNA Methylation Data Analysis Workshop (April 12-15, 2021 in Berlin)
Epigenetics Bisulfite Methylation
updated 6 weeks ago by 38k • written 2.2 years ago by 9.9k
1
vote
0
replies
584
views
News: Online training: Advanced Programming in R
Programming R
updated 6 weeks ago by 38k • written 2.2 years ago by ★ 2.3k
0
votes
0
replies
582
views
News: Tutorial on Detecting Structural Variants in ONT data
structural-variants ONT
updated 6 weeks ago by 38k • written 2.2 years ago by • 0
0
votes
0
replies
1.1k
views
News: Online Workshop: Bioinformatics Pipeline Development with Nextflow (May 3-6, 2021)
NGS pipeline Nextflow
updated 6 weeks ago by 38k • written 2.2 years ago by 9.9k
0
votes
0
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637
views
News: Online Training - GENOME-WIDE PREDICTION OF COMPLEX TRAITS - Last days to apply
next-gen genome SNP
updated 6 weeks ago by 38k • written 2.2 years ago by ★ 2.3k
0
votes
1
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948
views
News: :: LAST CALL :: Online Course - A Practical Introduction to NGS Data Analysis (March 1 - 3, 2021)
DNA-Seq Workshop RNA-Seq
updated 6 weeks ago by 38k • written 2.2 years ago by 9.9k
3
votes
0
replies
915
views
News: ONLINE TRAINING: Environmental Metagenomics
metagenomics nanopore assembly illumina
updated 6 weeks ago by 38k • written 2.2 years ago by ★ 2.3k
2
votes
0
replies
567
views
News: ONLINE TRAINING - Web Applications Development with R Shiny
Shiny R
updated 6 weeks ago by 38k • written 2.2 years ago by ★ 2.3k
0
votes
0
replies
564
views
News: Online Training - An introduction to Nanopore direct RNA Sequencing - last 2 places left
RNA-Seq Nanopore
updated 6 weeks ago by 38k • written 2.2 years ago by ★ 2.3k
2
votes
0
replies
654
views
News: Online training - Computational Bayesian methods using brms in R
Bayesian-Statistics R
updated 6 weeks ago by 38k • written 2.3 years ago by ★ 2.3k
0
votes
0
replies
596
views
News: ONLINE training - Eukaryotic Metabarcoding
eDNA Metabarcoding
updated 6 weeks ago by 38k • written 2.3 years ago by ★ 2.3k
0
votes
0
replies
713
views
News: New columns added to the web BLAST Descriptions Table including taxonomic info and sequence length
ncbi blast
updated 6 weeks ago by 38k • written 2.3 years ago by 127k
2
votes
0
replies
712
views
News: Nanopore direct RNA Sequencing course
RNA-Seq Nanopore
updated 6 weeks ago by 38k • written 2.3 years ago by ★ 2.3k
0
votes
0
replies
1.2k
views
News: Online training - Proteomics in R and Bioconductor
Bioconductor R Proteomics
updated 6 weeks ago by 38k • written 2.4 years ago by ★ 2.3k
0
votes
0
replies
641
views
News: Are Online Trainings for NGS Data Analysis as Effective as In-person Workshops?
DNA-Seq Workshop RNA-Seq
updated 6 weeks ago by 38k • written 2.4 years ago by 9.9k
460 results • Page 4 of 10
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Getting a list of protein coding genes in human
Answer: How to make cut off linein cluster,
How to make cut off linein cluster,
Answer: GetBM - GERP conservation score for GRCm39
Answer: Using STAR for RNA seq-alignment.
NCBI's IgBLAST version 1.21.0 is now available
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Recent Replies
Comment: Is it possible to do DGE analysis using log 2 normalized data with EdgeR ? by Adaline.D • 0
That explains a lot to me. Thank you, seidel! They used Affymetrix Human Gene 1.0 ST Array chips. Hope you have a wonderful day.
Comment: How to make cut off linein cluster, by Info.shi ▴ 20
Thank you so much it worked. I highly appreciate your help.
Answer: How to make cut off linein cluster, by Jeremy ▴ 770
Try adding the following line of code: abline(h = .02)
Comment: Problem with fatsq-dump by Utpal • 0
Thank you for your support. I tried the command conda install -c bioconda sra-tools But, still with the command, fastq-dump it return…
Comment: RNA Sequencing and Vg pan -transcriptome build by Jordan M Eizenga ▴ 70
The `vg mpmap` subcommand has features for mapping RNA-seq data to a graph. We describe in more detail in [this publication][1], including …
Comment: how to import hdf5 Hi-C data into R using HiTC package by rpolicastro 11k
From the error you may need to specify the file path instead of passing it the imported data.
Comment: RNA Sequencing and Vg pan -transcriptome build by cmdcolin ★ 2.9k
i am not sure how about the data input format but 'hisat2' is able to 'align rna-seq to a population reference'. this may be a little diffe…
Comment: Is it possible to do DGE analysis using log 2 normalized data with EdgeR ? by seidel 11k
What technology is the GEO data set derived from? Signal intensity implies a fluorescence read out (i.e. microarray). If that's the case, y…
Comment: Log2 FC Threshold by seidel 11k
Given that 0.2 is a 1.15 fold change (2^0.2) you're right to be skeptical, but there's no clear answer as to the significance. Consider tha…
Comment: Read lengths greater than insert length by GenoMax 127k
As I said above the adapters are each ~60 bp long so they add ~120 bp (5' and 3' end adapters) to the length of the DNA fragment. What you …
Comment: Problem with fatsq-dump by GenoMax 127k
Looks like the developers have an answer for this error: https://github.com/ncbi/sra-tools/issues/139 At least the program seems to be ins…
Comment: Read lengths greater than insert length by shpak.max ▴ 30
I'm not claiming that all fragment lengths are exactly 50, the typical range for my data is 45-60. However, my read lengths are all 150, so…
Answer: Read lengths greater than insert length by GenoMax 127k
Illumina libraries are made by adding adapters to the ends of DNA fragment(s). Those adapters themselves are about 60 nucleotides long. Not…
Answer: How to get fraction of unspliced reads for specific gene from scRNAseq Cell Rang by Rob 5.9k
If you have the raw data, you can easily get this information using [alevin-fry](https://www.nature.com/articles/s41592-022-01408-3). It pr…
Answer: Matching gene-expression data with clinical data: best practices. by pilargmarch ▴ 60
I really like using [the R/Bioconductor package TCGAbiolinks][1], it gives you clinical and expression data by patient ID. [1]: http…
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