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898 results • Page 4 of 18
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9
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4
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2.5k
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7 follow
News: fastp 0.22 released, with new FASTQ deduplication feature.
fastp
updated 9 months ago by 43k • written 2.7 years ago by ★ 2.5k
0
votes
0
replies
483
views
News: Course - RADseq data analysis with Stacks
RADseq Phylogenomics Stacks Population-genomics
updated 8 months ago by 43k • written 9 months ago by ★ 2.5k
0
votes
0
replies
426
views
News: course - DNA METHYLATION IN ECOLOGY AND EVOLUTION
Non-Model-Organisms DNA-Methylation BS-seq
updated 8 months ago by 43k • written 9 months ago by ★ 2.5k
2
votes
0
replies
541
views
News: Registration open for Nextflow Summit 2023, and free online Nextflow / nf-core training
nextflow
9 months ago by Marcel Ribeiro-Dantas ▴ 470
0
votes
0
replies
436
views
News: 2-day Course on Introduction to Nextflow
Workflow Reproducibility Nextflow
updated 9 months ago by 43k • written 9 months ago by ★ 2.5k
0
votes
0
replies
418
views
News: Physalia courses in September
Genomics R Data-Science
updated 9 months ago by 43k • written 9 months ago by ★ 2.5k
0
votes
0
replies
448
views
News: Cellosaurus release 46
knowledgebase cell-line cellosaurus
9 months ago by Amos Bairoch ▴ 120
0
votes
0
replies
336
views
News: Course - Data Manipulation and Visualization in Python
Data-Manipulation Data-Visualisation Python
updated 10 months ago by 43k • written 10 months ago by ★ 2.5k
0
votes
0
replies
496
views
News: Kindle edition of book NO LONGER available. Book available for free
Computational-Biology
10 months ago by sinha.shriprakash ▴ 20
0
votes
0
replies
498
views
News: Course on Generalised Linear Mixed Models in R
GLMM R Statistics Mixed-Models
updated 10 months ago by 43k • written 10 months ago by ★ 2.5k
0
votes
0
replies
456
views
News: Course - Network Analysis in Systems Biology with R/Bioconductor
R Systems-Biology Network-Analysis Bioconductor
updated 8 months ago by 43k • written 10 months ago by ★ 2.5k
0
votes
0
replies
372
views
News: course on Reproducibility data analysis with R
R Reproducibility Git Github
10 months ago by carlopecoraro2 ★ 2.5k
38
votes
8
replies
1.6k
views
6 follow
News: What happens when a bioinformatician has his own genome sequenced for $300?
DNAseq DNA WGS
updated 10 months ago by 35k • written 10 months ago by 11k
4
votes
0
replies
641
views
News: A Practical Introduction to Single-Cell RNA-Seq Data Analysis (November 8-10, 2023 in Berlin, Germany)
NGS RNA-Seq single-cell workshop
10 months ago by David Langenberger 11k
0
votes
0
replies
695
views
News: Hands-On NGS Data Analysis Courses 2023
RNA-seq DNA-seq Workshop
updated 10 months ago by 43k • written 10 months ago by 11k
1
vote
0
replies
500
views
News: Course - Introduction to Deep Learning for biologists
Genomics Deep-Learning Python NGS
updated 10 months ago by 43k • written 10 months ago by ★ 2.5k
1
vote
0
replies
434
views
News: Good bioinformatics training resources
NGS
updated 10 months ago by 161k • written 10 months ago by ▴ 80
0
votes
0
replies
540
views
News: Generalized Linear Models (GLM) course in R
R GLM statistics
10 months ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
466
views
News: course - Advanced Python programming
Python Deep-Learning Machine-Learning
updated 8 months ago by 43k • written 11 months ago by ★ 2.5k
3
votes
2
replies
683
views
News: Participate in a NCBI/NIAID Virtual Codeathon: VCF Files for Population Genomics, Jul 31 - Aug 4, 2023
VCF SARS-CoV-2 NCBI Codeathon
11 months ago by PeterC_NCBI ▴ 410
0
votes
0
replies
417
views
News: Virtual Genome Annotation Workshop
annotation genome workshop
11 months ago by mia.nahom ▴ 10
0
votes
0
replies
684
views
News: Course - Longitudinal data analysis in R
Longitudinal-Data R Genomics
updated 11 months ago by 43k • written 11 months ago by ★ 2.5k
0
votes
0
replies
415
views
News: New version of ElasticBLAST (1.1.0) available from NCBI
ElasticBLAST BLAST. NCBI
11 months ago by PeterC_NCBI ▴ 410
0
votes
0
replies
379
views
News: Course - Introduction to CRISPR for Ecology and Evolution Studies
Genomics CRISPR
11 months ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
1.5k
views
News: GWAS course
GWAS R
updated 11 months ago by 43k • written 11 months ago by ★ 2.5k
0
votes
0
replies
485
views
News: Course - RNAseq data analysis with R/Bioconductor
R Tidyverse RNA-seq Bioconductor
updated 8 months ago by 43k • written 11 months ago by ★ 2.5k
0
votes
0
replies
439
views
News: Course - Multiplex imagine analysis/ Spatial Omics
Multiplex-Image-Analysis Spatial-Omics
updated 11 months ago by 43k • written 11 months ago by ★ 2.5k
3
votes
3
replies
1.2k
views
News: NCBI's IgBLAST version 1.21.0 is now available
IgBLAST BLAST T-Cell NCBI receptors
11 months ago by PeterC_NCBI ▴ 410
0
votes
0
replies
377
views
News: course- Population genomic inference from low-coverage whole-genome sequencing data
Whole-Genome-Sequencing Population-Genomics
updated 11 months ago by 43k • written 11 months ago by ★ 2.5k
0
votes
0
replies
389
views
News: PROGRAMMING IN R : MOVING FROM BEGINNER TO ADVANCED
Programming Training R
11 months ago by carlopecoraro2 ★ 2.5k
1
vote
0
replies
844
views
News: NCBI BLAST+ 2.14.0 release includes faster protein and translation search options
NCBI BLAST
11 months ago by PeterC_NCBI ▴ 410
0
votes
0
replies
539
views
News: Get Your Science going in 10 Minutes with the Biostar Handbook!
education biostarhandbook
updated 11 months ago by 43k • written 11 months ago by 100k
0
votes
0
replies
392
views
News: Course - Network Analysis in Systems Biology with R/Bioconductor
R Network-Analysis Bioconductor Systems-Biology
updated 11 months ago by 43k • written 12 months ago by ★ 2.5k
0
votes
0
replies
435
views
News: Course - Phylogenetic Comparative Methods in R
Comparative-Methods R Phylogenetics
updated 11 months ago by 43k • written 12 months ago by ★ 2.5k
0
votes
0
replies
479
views
News: GWAS course in June
GWAS
updated 11 months ago by 43k • written 12 months ago by ★ 2.5k
0
votes
0
replies
462
views
News: Single-cell RNAseq with R/Bioconductor course
scRNAseq Bioconductor R
updated 11 months ago by 43k • written 12 months ago by ★ 2.5k
0
votes
0
replies
451
views
News: Cellosaurus release 45 is available
knowledgebase cell-line
updated 10 months ago by 43k • written 13 months ago by ▴ 120
0
votes
0
replies
414
views
News: Course - GENERALIZED LINEAR MODELS in R
GLM R Generalised-Linear-Model
updated 11 months ago by 43k • written 13 months ago by ★ 2.5k
0
votes
0
replies
463
views
News: Bioinformatics courses in February
Genomics Bioinformatics-Training
updated 10 months ago by 43k • written 15 months ago by ★ 2.5k
0
votes
0
replies
399
views
News: Biosoftics. An Enovation
assembly gene alignment sequence
updated 10 months ago by 43k • written 3.2 years ago by ▴ 10
0
votes
0
replies
645
views
News: Online Training - Introduction to Python
Python-Programming
updated 10 months ago by 43k • written 3.6 years ago by ★ 2.5k
0
votes
0
replies
1.0k
views
News: [Webinar] Using t-SNE for data analysis : An Introduction by Dr. Laurens van der Maaten (Inventor of t-SNE, Research Director at Facebook AI Research)
scRNA-seq webinar t-SNE
updated 10 months ago by 43k • written 3.6 years ago by ▴ 450
3
votes
0
replies
1.8k
views
News: New web BLAST default parameters and search limits are now in place at NCBI
www-blast blast ncbi
updated 10 months ago by 43k • written 3.8 years ago by 141k
0
votes
2
replies
1.1k
views
News: Training - Introduction to Deep Learning
Deep-Learning Machine-Learning Python-Programming
updated 10 months ago by 43k • written 3.8 years ago by ★ 2.5k
1
vote
0
replies
715
views
News: Training - Data visualization in R with ggplot2
R Dataviz ggplot2
updated 10 months ago by 43k • written 3.6 years ago by ★ 2.5k
1
vote
0
replies
437
views
Spam: Research Training in Next-Generation Sequencing Data Analysis.
RNA-Seq ChIP-Seq
updated 10 months ago by 43k • written 3.7 years ago by 10
1
vote
0
replies
1.3k
views
News: Pan-Structural Variation hackathon in the Cloud (Remote hackathon)
structural-variants sequencing
updated 10 months ago by 43k • written 3.7 years ago by 9.7k
1
vote
0
replies
793
views
News: Announcing the Genetic Engineering Attribution Challenge!
machine-learning data-science competition
updated 10 months ago by 43k • written 3.7 years ago by ▴ 10
0
votes
0
replies
825
views
News: :: FINAL CALL :: Only 2 seats left - RNA-Seq Data Analysis Workshop for Beginners in Leipzig, Germany
NGS RNA-Seq transcriptomics
updated 10 months ago by 43k • written 3.7 years ago by 11k
0
votes
0
replies
645
views
News: Software: BIRCH Bioinformatics System 3.70
alignment Assembly sequence genome RNA-Seq
updated 10 months ago by 43k • written 3.8 years ago by ▴ 460
898 results • Page 4 of 18
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What are Tiles in Sequencing
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Recent Replies
Comment: How to convert plink files to Hapmap Format by Sofia • 0
SC899359_PC75420_A05 SC899359_PC75420_A05 0 0 0 2 SC899360_PC75415_D01 SC899360_PC75415_D01 0 0 0 2 SC899361_PC75425_H05 SC899361_PC75425_H…
Comment: How to convert plink files to Hapmap Format by bk11 ★ 2.3k
Please show me a few lines of phenotype updated .fam file. You can do `head your_data_phenoUP.fam` and paste result here. Please do not us…
Comment: GEMMA GWAS how to specify factor or numerical for covariates by Sofia • 0
Hi, I don't have a solution to your question but I followed this tutorial and was helpful to me in my analysis https://youtu.be/NusV6duyvXs…
Comment: Is it possible to get a list of representative genomes from a past RefSeq releas by GenoMax 141k
Catalog file lists the genomes included. There seem to be 71365 unique items in field 2. 2 Bacteria WP_000018326.1 4459…
Comment: How to convert plink files to Hapmap Format by Sofia • 0
yes sure ! ![enter image description here][1] [1]: /media/images/f0f94f6c-4387-4188-a1aa-19152a89
Answer: AGeNT LocatIt by Greg • 0
Give it more memory. ~10x more memory, or whatever you can give it, I had samples that weren't even close to being done after 3.5 da…
Comment: Is it possible to get a list of representative genomes from a past RefSeq releas by Bertalan_Takacs ▴ 90
Thanks! I've already tried looking through these files, I need release 83. I am trying to find this information in the .catalog file of the…
Answer: Is it possible to get a list of representative genomes from a past RefSeq releas by GenoMax 141k
Possibly. You will need to know the RefSeq release version. Check in this directory: https://ftp.ncbi.nlm.nih.gov/refseq/release/release-ca…
Comment: How to convert plink files to Hapmap Format by bk11 ★ 2.3k
Hey, can you please show me a few lines of your phenotype updated .fam file? I m seeing there are 7 columns in it, that might be the proble…
Comment: PCA plot (Suggestions Needed) by jkim ▴ 170
How much variance were explained by PC1 and PC2? It doesn't look like that the largest source of variation came from the genotype differenc…
Comment: How to trim transcripts using information from NCBI contamination screen report by Lada ▴ 30
Thank you and yes, I agree going step back is the best option but I am in a hurry at the moment so I just need to stick to the transcriptom…
Comment: How to convert plink files to Hapmap Format by Sofia • 0
Thank you so much for helping me out! I did the steps you mentioned but still got the same issue as shown in the snapshot ![enter image des…
Comment: different FeatureCounts output for the same data by Istvan Albert 100k
Make sure you are using the same version of featureCounts, it has changed how it deals with paired end reads. The exact same command will p…
Comment: Wilcox test using data slot (log normalized count values) of scRNA-seq between t by mropri ▴ 150
Thank you, will do Wilcox for now as I only have one control and one treatment, as I get more control and treatment samples, will stick wit…
Comment: Is it Acceptable to Have Uniform Quality Scores in a FASTQ File? by Istvan Albert 100k
I think the blog post lines up wit both of our statements. It seems that 2-way binning (pass/fail) already dramatically improves the calls…
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