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News: Data analysis with the Tidyverse in July (18th-21st).
Visualization R Tidyverse data-analysis
updated 10 months ago by 39k • written 11 months ago by ★ 2.3k
1
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0
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306
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News: Use your standard DNA variant caller for SNP calling in Bisulfite-Seq data
bisulfite BS-Seq methylation
11 months ago by David Langenberger 9.9k
0
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0
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349
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News: online training - Data Visualization with Python
Python Data-Visualization
updated 10 months ago by 39k • written 11 months ago by ★ 2.3k
0
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0
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384
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News: Cellosaurus release 42 is available
line cell biocuration knowledgebase database
11 months ago by Amos Bairoch ▴ 110
0
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0
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294
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News: Online course- Reproducibility in Bioinformatics - 11-13 July
Docker Reproducibility
updated 5 months ago by 39k • written 11 months ago by ★ 2.3k
0
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0
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329
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News: Online course - Metabarcoding in microbial Ecology
Qiime2 Metabarcoding Microbial-Ecology
updated 5 months ago by 39k • written 13 months ago by ★ 2.3k
3
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1
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439
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News: Free web seminars related to small non-coding RNA bioinformatics
smallRNA microRNA
updated 5 months ago by 39k • written 13 months ago by ▴ 60
0
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0
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308
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News: Online course - Developing R/Bioconductor packages for genomics
Bioconductor R
updated 5 months ago by 39k • written 13 months ago by ★ 2.3k
1
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0
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435
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News: Phase 1 of the NCTR Indel Calling from Oncopanel Sequencing Data Challenge is now live!
oncopanel indel-calling
updated 5 months ago by 39k • written 13 months ago by ▴ 10
0
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0
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899
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News: Pre-Register for the NCTR Indel Calling from Oncopanel Sequencing Data Challenge with FDA’s National Center for Toxicological Research (NCTR) and pre…
oncopanel indel-calling
updated 5 months ago by 39k • written 13 months ago by ▴ 10
0
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1
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2.2k
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News: Nature Index: Novogene is teaming up with laboratories worldwide for life sciences and human health research
NGS Nature Sequencing
updated 5 months ago by 39k • written 14 months ago by ▴ 300
1
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0
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284
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News: Reproducibility in Bioinformatics Workshop
Reproducibility
updated 5 months ago by 39k • written 14 months ago by ★ 2.3k
0
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0
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285
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News: Cellosaurus release 41 is available
knowledgebase biocuration cell-line
updated 3 months ago by 39k • written 14 months ago by ▴ 110
1
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0
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435
views
News: :: LAST CALL :: Bioinformatics Pipeline Development with Nextflow (April 4-7, 2022)
NGS Pipeline-Development Nextflow
updated 5 months ago by 39k • written 15 months ago by 9.9k
0
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0
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393
views
News: Cellosaurus release 40 is available
knowledgebase cell-line
updated 3 months ago by 39k • written 17 months ago by ▴ 110
0
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0
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323
views
News: Bioinformatics Analysis
Transcriptome genome data-analysis
updated 3 months ago by 39k • written 18 months ago by • 0
0
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0
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367
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News: Bioinformatics
metagenomics metatranscriptomics
updated 3 months ago by 39k • written 18 months ago by • 0
0
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0
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365
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News: UC Davis Bioinformatics Core Workshops
data-analysis
updated 3 months ago by 39k • written 18 months ago by • 0
0
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0
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477
views
News: Metagenomics and Metatranscriptomics Workshop!
metagenomics metatranscriptomics
updated 3 months ago by 39k • written 18 months ago by • 0
0
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0
replies
650
views
News: UC Davis Bioinformatics Core Workshops
Workshops UC-Davis
updated 3 months ago by 39k • written 18 months ago by • 0
1
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1
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512
views
News: QC for Next Generation Sequencing
NGS QC
updated 12 weeks ago by 39k • written 19 months ago by • 0
0
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0
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493
views
News: Cellosaurus release 39 is available
knowledgebase cell-line
updated 3 months ago by 39k • written 20 months ago by ▴ 110
0
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0
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602
views
News: FINAL CALL :: Online Course - A Practical Introduction to NGS Data Analysis (July 14-16, 2021)
NGS workshop
updated 11 weeks ago by 39k • written 23 months ago by 9.9k
0
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0
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484
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News: Cellosaurus release 38 is available
knowledgebase cell-line
updated 3 months ago by 39k • written 2.0 years ago by ▴ 110
0
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1
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1.1k
views
News: 5th Berlin Summer School in NGS Data Analysis 2021 (October 4-8)
DNA-Seq Workshop RNA-Seq NGS
updated 3 months ago by 39k • written 2.3 years ago by 9.9k
5
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0
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1.0k
views
News: Bioinformatics Contest 2021
bioinfcontest contest bioinforussia
updated 3 months ago by 39k • written 2.1 years ago by ▴ 50
0
votes
0
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570
views
News: Introduction to Deep Learning
Machine-Learning Deep-Learning Python
updated 3 months ago by 39k • written 2.2 years ago by ★ 2.3k
0
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0
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608
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News: Learn how to do modern reproducible data science
Snakemake Workflows Nextflow
updated 3 months ago by 39k • written 2.2 years ago by ★ 2.3k
0
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0
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498
views
News: Noncoding RNA conference (including bioinformatics)
conference RNA noncoding-RNA
updated 3 months ago by 39k • written 2.2 years ago by ▴ 20
0
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0
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563
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News: Spring Bioinformatics Courses @ Edinburgh Genomics
metagenomics RNA-Seq SNP training
updated 3 months ago by 39k • written 2.2 years ago by ▴ 40
0
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1
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897
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News: Results are now Available for the precisionFDA Truth Challenge V2
genome
updated 3 months ago by 39k • written 2.8 years ago by ▴ 150
1
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0
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656
views
News: Online Training - Analysis of Transposable elements
genome assembly sequence
updated 3 months ago by 39k • written 2.3 years ago by ★ 2.3k
0
votes
0
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561
views
News: Three x 2day online Python courses
Python
updated 3 months ago by 39k • written 2.3 years ago by ▴ 60
0
votes
0
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562
views
News: Nine x 2day online R courses
R
updated 3 months ago by 39k • written 2.3 years ago by ▴ 60
3
votes
0
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600
views
News: Free Ensembl Browser and REST API virtual workshops in March
Ensembl REST-API genome-browser training workshop
updated 3 months ago by 39k • written 2.3 years ago by ▴ 270
5
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1
reply
1.0k
views
News: Paid opportunity: need microbiome experts for a survey and test of robustness
survey
updated 3 months ago by 39k • written 2.7 years ago by 21k
0
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1
reply
649
views
News: The NCBI Datasets command-line tool now provides ortholog data
ncbi gene json refseq
updated 3 months ago by 39k • written 2.3 years ago by ▴ 50
1
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0
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1.2k
views
News: 3-day ONLINE TRAINING - NEXTFLOW
workflow Nextflow
updated 3 months ago by 39k • written 2.3 years ago by ★ 2.3k
0
votes
0
replies
672
views
News: ONLINE training - Single-cell RNA-seq analysis with R/Bioconductor. 07-11 June
Bioconductor RNA-Seq Single-Cell R
updated 3 months ago by 39k • written 2.3 years ago by ★ 2.3k
3
votes
0
replies
901
views
News: Online training - Unix and shell scripting for bioinformatics
Linux scripting Unix
updated 3 months ago by 39k • written 2.4 years ago by ★ 2.3k
0
votes
0
replies
682
views
News: Cellosaurus release 37 is available
knowledgebase cell-line
updated 3 months ago by 39k • written 2.4 years ago by ▴ 110
1
vote
1
reply
770
views
News: ONLINE TRAINING -GENOME ASSEMBLY USING OXFORD NANOPORE SEQUENCING
genome assembly Nanopore
updated 3 months ago by 39k • written 2.4 years ago by ★ 2.3k
0
votes
0
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983
views
News: DNA Methylation Data Analysis Workshop (April 12-15, 2021 in Berlin)
Epigenetics Bisulfite Methylation
updated 3 months ago by 39k • written 2.4 years ago by 9.9k
1
vote
0
replies
617
views
News: Online training: Advanced Programming in R
Programming R
updated 3 months ago by 39k • written 2.4 years ago by ★ 2.3k
0
votes
0
replies
599
views
News: Tutorial on Detecting Structural Variants in ONT data
structural-variants ONT
updated 3 months ago by 39k • written 2.4 years ago by • 0
0
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0
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1.2k
views
News: Online Workshop: Bioinformatics Pipeline Development with Nextflow (May 3-6, 2021)
NGS pipeline Nextflow
updated 3 months ago by 39k • written 2.4 years ago by 9.9k
0
votes
0
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650
views
News: Online Training - GENOME-WIDE PREDICTION OF COMPLEX TRAITS - Last days to apply
next-gen genome SNP
updated 3 months ago by 39k • written 2.4 years ago by ★ 2.3k
0
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1
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973
views
News: :: LAST CALL :: Online Course - A Practical Introduction to NGS Data Analysis (March 1 - 3, 2021)
DNA-Seq Workshop RNA-Seq
updated 3 months ago by 39k • written 2.4 years ago by 9.9k
3
votes
0
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940
views
News: ONLINE TRAINING: Environmental Metagenomics
metagenomics nanopore assembly illumina
updated 3 months ago by 39k • written 2.4 years ago by ★ 2.3k
2
votes
0
replies
587
views
News: ONLINE TRAINING - Web Applications Development with R Shiny
Shiny R
updated 3 months ago by 39k • written 2.4 years ago by ★ 2.3k
1,000 results • Page 4 of 20
Recent Votes
Answer: Saving results from yeastgenome.org blastp search
Comment: RNASeq gene labeling and mRNA filter from bulkRNA data.
Answer: Saving results from yeastgenome.org blastp search
Comment: snps from empty well, Illumina Sequencing
Extract sequences from a fastq file by a list of IDs
Answer: Extract sequences from a fastq file by a list of IDs
Answer: Differences in GTF files hg19 and hg38
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Recent Awards • All
Popular Question to Payal ▴ 140
Scholar to nux ▴ 20
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Recent Replies
Comment: VCF file CSQ flag by Payal ▴ 140
Its a gvcf file #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT S101 S102 S103 S104 S105
Comment: CellRanger problem by GenoMax 130k
And how much memory do you have assigned for this job? Likely you do not have enough memory for this process.
Comment: VCF file CSQ flag by Ram 39k
> a g.VCF file A `.vcf` file or a `gvcf` file?
Comment: CellRanger problem by Ram 39k
What is the cellranger command you're using?
Comment: RNASeq gene labeling and mRNA filter from bulkRNA data. by Yeeshouw • 0
I see, I believe I was running an older version or have missed the option, I have updated to v2.10.5 and can see this option now. Thank you…
Answer: Saving results from yeastgenome.org blastp search by GenoMax 130k
Looks like yeastgenome site does not provide a way to export or save the results in any other format. You could do the search over at NCBI …
Answer: Differences in GTF files hg19 and hg38 by GenoMax 130k
Not sure where you got your GTF for GRCh38 from but [**one from GENCODE**][1] has the level info you are looking for. chr1 HAVANA…
Comment: CHiP-Seq Questions by B.N. • 0
Thank you for the suggestions Dr. Stark.
Comment: Diff Bind Questions by B.N. • 0
Thank you so much for the insight Dr. Stark!
Comment: Is PanCan data microarray or rna-seq by GenoMax 130k
This particular example ("GeneChip") is an array. Early TCGA samples may have been done using arrays and later sequenced. Appears to be thi…
Comment: ChatGPT optimized for bioinformatics questions by Sasha ▴ 280
Hoping to add functionality around this. Stay tuned. Big problem for our space that needs to be resolved.
Comment: Is PanCan data microarray or rna-seq by solarchan7 • 0
Hi, so this [paper](https://www.nature.com/articles/s41598-019-45165-4) uses the TCGA dataset and in the supplementary information, it ment…
Comment: counts matrix should be numeric, currently it has mode: character when using a c by Darked89 4.4k
Since the input file is named `normalized.csv` and the values look like floats most likely the counts have been already normalized somehow.
Comment: Embryo transcriptome by Basti ★ 1.6k
https://www.ebi.ac.uk/ena/browser/view/PRJEB11202 https://www.ebi.ac.uk/ena/browser/view/PRJNA153427
Comment: ChatGPT optimized for bioinformatics questions by ATpoint 72k
How is it trained on PubMed/papers? One major drawback of ChatGPT is that it wildly makes up papers that do not even exist but with great c…
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