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News: March 13-16: Virtual Nextflow and nf-core training event in 5 languages
nf-core pipeline Nextflow
updated 13 months ago by ▴ 340 • written 14 months ago by 4.5k
0
votes
3
replies
1.0k
views
News: EMBO | EMBL Symposium: Seeing is Believing - Imaging the Molecular Processes of Life
image-analysis
updated 10 months ago by 43k • written 5.5 years ago by ▴ 10
4
votes
3
replies
2.2k
views
News: India Recently Started Personal Genome Profiling, Commercially.
genome-profiling
updated 13 months ago by 43k • written 10.9 years ago by ▴ 990
9
votes
3
replies
3.3k
views
News: New Human Genome Assembly (Grch38) Released
human-genome assembly
updated 13 months ago by 43k • written 10.3 years ago by 161k
7
votes
3
replies
3.9k
views
News: Visualizing genomic data: techniques and challenges. Our interview with Dr. Malachi Griffith, Dr. Obi Griffith and Mr. Zachary Skidmore (The Griffith…
R RNA-Seq genome NGSdata
updated 11 months ago by 43k • written 6.8 years ago by ★ 2.5k
14
votes
3
replies
3.7k
views
News: Updated: Conference/Symposium/Seminar/Workshop alert 2018-2019
seminar symposium conference
updated 11 months ago by 43k • written 5.9 years ago by 5.8k
22
votes
3
replies
3.0k
views
News: Biostar: 10,000 Question Milestone
meta
updated 13 months ago by 43k • written 10.9 years ago by 100k
3
votes
3
replies
2.1k
views
News: Workshop: Berlin. Data manipulation and visualization with Python. 13-17 March (Registration deadline is today!!)
next-gen RNA-Seq genome SNP
updated 12 months ago by 43k • written 7.2 years ago by ★ 2.5k
8
votes
3
replies
1.8k
views
News: Impact of outdated gene annotations on pathway enrichment analysis
pathway-enrichment gene-ontology david go
updated 12 months ago by 43k • written 7.6 years ago by 5.1k
3
votes
3
replies
2.3k
views
News: Innocentive Challenge: Identify Organisms From A Stream Of Dna Sequences And Get $1,000,000
ngs
updated 13 months ago by 43k • written 11.0 years ago by ▴ 830
1
vote
2
replies
666
views
News: Course: Network Analysis in R
NetworkAnalyis R
15 months ago by carlopecoraro2 ★ 2.5k
2
votes
2
replies
1.4k
views
News: GeNets: a unified web platform for network-based genomic analyses
networks pathways RNA-Seq visualization
updated 11 months ago by 43k • written 5.8 years ago by ★ 5.2k
8
votes
2
replies
748
views
News: FINAL CALL - Single-Cell RNA-Seq Data Analysis: A Practical Introduction (May 6-8, 2024 in Berlin)
single-cell sequencing
13 days ago by David Langenberger 11k
6
votes
2
replies
2.5k
views
News: Interested in de novo transcriptome assembly using Trinity? Check out our interview to Brian Haas
alignment RNA-Seq
updated 12 months ago by 43k • written 7.1 years ago by ★ 2.5k
2
votes
2
replies
2.2k
views
News: 2017 NIH SUMMER INTERNSHIP PROGRAM IN BIOMEDICAL RESEARCH (SIP)--applications open
NIH training
updated 12 months ago by 43k • written 7.4 years ago by 26k
2
votes
2
replies
1.9k
views
News: BioC 2015, Bioconductor Annual Conference, July 20-22, Seattle, WA
Bioconductor Conference
updated 21 months ago by 43k • written 9.0 years ago by ★ 1.6k
2
votes
2
replies
1.6k
views
News: User-friendly Bioinformatics From RNA Seq to Biological Interpretation
machine-learning RNA-seq
updated 11 months ago by 43k • written 5.7 years ago by ▴ 10
11
votes
2
replies
2.4k
views
News: Ensembl 76 is out
Genome-browser Ensembl
updated 2.3 years ago by 43k • written 9.7 years ago by 23k
0
votes
2
replies
1.0k
views
News: Online Course - A Practical Introduction to NGS Data Analysis (February 01-03, 2023)
NGS DNAseq variant-calling RNAseq
15 months ago by David Langenberger 11k
1
vote
2
replies
1.6k
views
News: My own brand-new blog for bioinformatics learning
learning
updated 14 months ago by 43k • written 6.4 years ago by ▴ 100
9
votes
2
replies
14k
views
News: Bio-Linux 8 is now available
genome rna-seq alignment Assembly next-gen
updated 2.4 years ago by 43k • written 9.7 years ago by ★ 2.2k
3
votes
2
replies
534
views
News: Announcement: Research Topic "Mechanistic, Machine Learning and Hybrid Models of the 'Other' Endocrine Regulatory Systems in Health and Disease", Vol…
mathematical-modelling endocrinology ML systems-biology machine-learning
20 days ago by Johannes W. Dietrich • 0
1
vote
2
replies
1.7k
views
News: NCBI Datasets - try it out!
Assembly refseq genome ncbi
updated 10 months ago by 43k • written 4.1 years ago by ★ 3.7k
2
votes
2
replies
1.9k
views
News: Introducing a new Instructor of Physalia-Courses: Dr. January Weiner
next-gen SNP sequence
updated 12 months ago by 43k • written 7.4 years ago by ★ 2.5k
2
votes
2
replies
1.4k
views
News: Course: Applied Statistics and Bioinformatics with R and Bioconductor. (Berlin, 22-26 January 2018)
R next-gen-sequencing
updated 11 months ago by 43k • written 6.4 years ago by ★ 2.5k
8
votes
2
replies
2.3k
views
News: The bioinformatics chat is a new podcast about bioinformatics. In the first episode we discuss Scallop, a transcriptome assembler
podcast Assembly RNA-Seq
updated 11 months ago by 43k • written 7.0 years ago by ▴ 120
1
vote
2
replies
1.4k
views
News: Webinar on Diagnosis of Rare Diseases using NGS Based Multi-gene Testing- Case studies by Dr.Aparna Ganapathy on 18 Apr 2018
variant-calling rare-disease dna-seq strand-ngs
updated 11 months ago by 43k • written 6.1 years ago by ▴ 70
3
votes
2
replies
682
views
News: Participate in a NCBI/NIAID Virtual Codeathon: VCF Files for Population Genomics, Jul 31 - Aug 4, 2023
VCF SARS-CoV-2 NCBI Codeathon
10 months ago by PeterC_NCBI ▴ 410
1
vote
2
replies
1.0k
views
News: Sage Bionetworks is seeking researchers and data scientists to participate in software user research!
research software
updated 10 months ago by 43k • written 5.2 years ago by ▴ 30
6
votes
2
replies
1.8k
views
News: Belly Button Biodiversity Project Requests Your Analysis
biodiversity project
updated 14 months ago by 43k • written 11.4 years ago by 11k
0
votes
2
replies
2.1k
views
News: Seqnews.Net: Discover And Share News On Next-Generation Sequencing
next-gen-sequencing
updated 14 months ago by 43k • written 11.3 years ago by 11k
6
votes
2
replies
1.5k
views
News: Biostars On The Genome Technology Cover
biostars
updated 14 months ago by 43k • written 11.3 years ago by 100k
5
votes
2
replies
4.7k
views
News: GeneSCF (Gene Enrichment Tool): Advice to users
kegg GeneSCF GO annotation
updated 14 months ago by 43k • written 7.3 years ago by 7.5k
0
votes
2
replies
1.4k
views
News: Webinar on fast and accurate DNA variant calling on 26 Apr 2017
variant-calling SNP gatk strand-ngs alignment
updated 11 months ago by 43k • written 7.0 years ago by ▴ 70
0
votes
2
replies
685
views
News: Reduced functionality of Ensembl and Ensembl Genomes on the 13th November
ensembl
updated 10 months ago by 43k • written 4.4 years ago by 23k
2
votes
2
replies
3.1k
views
News: Upcoming Hands-On NGS Data Analysis Workshops 2018
Mapping Workshop RNA-Seq Quality-Control DNA-Seq
updated 11 months ago by 43k • written 6.4 years ago by 11k
0
votes
2
replies
1.3k
views
News: :: FINAL CALL :: Next-Generation Sequencing Data Analysis: A Practical Introduction (December 12-14, 2022 in Munich, Germany)
rnaseq dnaseq sequencing ngs workshop
17 months ago by David Langenberger 11k
0
votes
2
replies
1.0k
views
News: Training - Introduction to Deep Learning
Deep-Learning Machine-Learning Python-Programming
updated 10 months ago by 43k • written 3.7 years ago by ★ 2.5k
8
votes
2
replies
896
views
News: Save time and money through improved onboarding of your NGS data scientists
NGS data-analysis
updated 13 months ago by 43k • written 4.3 years ago by 11k
3
votes
2
replies
1.0k
views
News: BETA Testing Opportunity for new RNA-seq data analysis tool
beta-testing RNA-seq multi-omics ngs
updated 10 months ago by 43k • written 5.3 years ago by • 0
7
votes
2
replies
2.2k
views
News: Upcoming Hands-On Workshop: microRNA Analysis Using Next-Generation Sequencing
NGS microRNA workshop
updated 12 months ago by 43k • written 7.9 years ago by 11k
2
votes
2
replies
2.2k
views
News: De Novo Transcriptome Analysis (Assembly and Differential Gene Expression in Non-Model Organisms)
Assembly RNA-Seq
updated 12 months ago by 43k • written 7.8 years ago by ▴ 500
0
votes
2
replies
2.1k
views
News: RNA-Seq Data Analysis Workshop in Berlin, Germany (13 - 16 March 2018)
NGS RNA-Seq sequencing
updated 11 months ago by 43k • written 6.3 years ago by 11k
3
votes
2
replies
2.6k
views
News: Samtools/htslib v1.2 released
htslib samtools bcftools
updated 13 months ago by 43k • written 9.2 years ago by 104k
0
votes
2
replies
1.8k
views
News: Exponential growth of data in biomedicine needs a skilled and experienced workforce
R biotech gene RNA-Seq
updated 11 months ago by 43k • written 6.8 years ago by ▴ 70
5
votes
2
replies
1.7k
views
News: #scRNABIO & organoids meeting
single-cell-sequencing microfluidics organoids
updated 11 months ago by 43k • written 5.7 years ago by ▴ 320
0
votes
2
replies
2.0k
views
News: NVIDIA GPU Conference sponsorship for Biostars + updated advertising terms
biostars meta
updated 2.0 years ago by 43k • written 9.2 years ago by 100k
0
votes
2
replies
204
views
News: NGS & Microarray Custom Data Analysis Training Program
snp RNA-Seq next-gen-sequencing ChIP-Seq
updated 10 months ago by 43k • written 4.8 years ago by • 0
12
votes
2
replies
423
views
News: 8th Berlin Summer School in NGS Data Analysis (June 10-14, 2024) - already half booked
Workshop RNA-Seq DNA-Seq Illumina
8 days ago by David Langenberger 11k
3
votes
2
replies
3.1k
views
News: Bioinformatics On Windows And Windows Cloud
windows cloud
updated 14 months ago by 43k • written 11.4 years ago by ▴ 20
1,000 results • Page 4 of 20
Recent Votes
Bedtools merge but only if intersection exists
Answer: Korean reference file
Comment: Korean human genome reference file
C: samtools sort bam file
A: samtools sort bam file
Answer: Downloaded pdb's on rcsb.org
Comment: Downloaded pdb's on rcsb.org
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Recent Awards • All
Popular Question to yueli7 ▴ 250
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Recent Replies
Comment: Korean human genome reference file by SeoGyun • 0
Thanks..... But I want to do imputation, so I have to make it as a vcf file, but the site only has a fatsa file....
Comment: miRNAs quantification using mirdeep2 tool by Ashok • 0
thank you for your reply https://github.com/rajewsky-lab/mirdeep2/blob/master/TUTORIAL.md i saw this github tutorial for miRNA quantifica…
Comment: Load a full GFF3 into annotation track using arrow (Apollo) by cmdcolin ★ 3.8k
Hi there, I let a developer know of this thread and they said they can check it out next week. Feel free to post to the https://github.com/…
Comment: How to get the reference panel for UKBB by 航太郎 • 0
Thanks for your guide!
Comment: Removing duplicates by joe ▴ 500
I'd try those OP @samuel recommends My guess is you're new to ONT, fast5 is the 'raw data' which is current over time...other than generat…
Comment: RNA seq differential expression analysis by swbarnes2 14k
No. Find a tutorial, try it, then if you have specific questions, ask of the galaxy help site.
Answer: Adding CB tag to bam file by swbarnes2 14k
Shouldn't you use PicardTools for this?
Comment: Downloaded pdb's on rcsb.org by Ram 43k
Sure. Or, one could do: bash try.bash "Homo sapiens" AHR | xargs -I v_pdb curl -s -o v_pdb.pdb https://files.rcsb.org/view/v_pdb.pdb
Comment: Downloaded pdb's on rcsb.org by iamsmor • 0
thank you so much
Comment: Downloaded pdb's on rcsb.org by GenoMax 141k
This may be the best option. Get the PDB ID's $ ./get.sh "Mus musculus" AHR 4M4X 5NJ8 5V0L 8H77 Then use `curl` to g…
Comment: Downloaded pdb's on rcsb.org by Ram 43k
It gives you the first 25 results though. I'll see if I can change that. EDIT: I've updated that number to 250. I'm hoping you won't need …
Comment: Downloaded pdb's on rcsb.org by iamsmor • 0
thank you very much
Answer: Downloaded pdb's on rcsb.org by Ram 43k
I'm going to build off of OP's query and give them a simple script: ```bash organism=$(echo $1 | sed 's/ /%20/g') gene=$2 curl -s https:/…
Comment: miRNAs quantification using mirdeep2 tool by GenoMax 141k
This question does not make complete sense. If you have your own data files why do you need deep sequencing reads? Genome (can be download…
Comment: Downloaded pdb's on rcsb.org by GenoMax 141k
For a non-programmer using the search builder link included above may be the best option. Even that is not very user friendly.
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