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News: Innocentive Challenge: Identify Organisms From A Stream Of Dna Sequences And Get $1,000,000
ngs News
updated 9.8 years ago by 96k • written 9.8 years ago by ▴ 830
4
votes
3
replies
1.7k
views
News: How the strengths of Lisp-family languages facilitate building complex and flexible bioinformatics applications
RNA-Seq ChIP-Seq News
6.1 years ago by Bohdan Khomtchouk ▴ 350
15
votes
2
replies
10k
views
News: Breaking News - Illumina MiniSeq
next-gen-sequencing
updated 6 months ago by 37k • written 7.1 years ago by ★ 1.3k
11
votes
2
replies
2.1k
views
News: Ensembl 76 is out
Genome-browser Ensembl
updated 13 months ago by 37k • written 8.5 years ago by 23k
0
votes
2
replies
1.2k
views
News: Webinar on fast and accurate DNA variant calling on 26 Apr 2017
SNP alignment variant calling strand ngs gatk News
5.7 years ago by Genomics ▴ 70
0
votes
2
replies
1.8k
views
News: RNA-Seq Data Analysis Workshop in Berlin, Germany (13 - 16 March 2018)
sequencing NGS RNA-Seq News
5.1 years ago by David Langenberger 9.8k
3
votes
2
replies
972
views
News: Course "Data Crunching: from hell to heaven", Udine, Italy, 25-27 July, 2018
next generation sequencing NGS News
4.7 years ago by Fabio Marroni ★ 2.9k
6
votes
2
replies
2.2k
views
News: Interested in de novo transcriptome assembly using Trinity? Check out our interview to Brian Haas
rna-seq alignment RNA-Seq News
5.9 years ago by carlopecoraro2 ★ 2.2k
1
vote
2
replies
1.6k
views
News: Making efficient NGS data analysis softwares - GATB-Core Library Tutorial
tutorial GATB next-gen tool News
updated 6.3 years ago by 125k • written 6.3 years ago by ▴ 140
13
votes
2
replies
2.6k
views
News: A Summary Of All Encode Related News On The Openhelix Blog: Encode Floods The News
News encode
updated 14 months ago by 37k • written 10.4 years ago by 96k
0
votes
2
replies
1.5k
views
News: 2 Days Hands on Workshop on Transcriptome-Seq Data Analysis
RNA-Seq sequencing SNP Assembly rna-seq News
5.6 years ago by clovergenls • 0
5
votes
2
replies
671
views
News: The precisionFDA BioCompute Object App-a-thon has been extended to October 18!
challenge BioCompute bioinformatics News
3.5 years ago by hollystephens723 ▴ 70
0
votes
2
replies
2.1k
views
News: MinION Community Meeting: Thursday Dec 3rd (now live)
minion
updated 5 months ago by 37k • written 7.2 years ago by 96k
1
vote
2
replies
1.3k
views
News: My own brand-new blog for bioinformatics learning
blog learning Blog News
updated 5.2 years ago by 26k • written 5.2 years ago by ▴ 100
2
votes
2
replies
459
views
News: ISO usability testers for NCBI comparative genome viewer
comparative eukaryotic alignment pangenome
12 months ago by SanjidaR_NCBI ▴ 20
6
votes
2
replies
1.9k
views
News: RNA-Seq Data Analysis Workshop in Leipzig, Germany (09 - 12 October 2017)
RNA-Seq workshop NGS News
updated 5.6 years ago by • 0 • written 5.6 years ago by 9.8k
1
vote
2
replies
519
views
News: Ensembl reduced functionality, early March
ensembl service News
3.0 years ago by Emily 23k
6
votes
2
replies
1.6k
views
News: Belly Button Biodiversity Project Requests Your Analysis
News
10.2 years ago by Mary 11k
9
votes
2
replies
14k
views
News: Bio-Linux 8 is now available
genome rna-seq alignment Assembly next-gen
updated 13 months ago by 37k • written 8.5 years ago by ★ 2.2k
0
votes
2
replies
1.8k
views
News: Illumina iSeq 100 sequencer
illumina firefly News iSeq100
5.1 years ago by GenoMax 125k
2
votes
2
replies
720
views
News: Interested in Machine Learning?
machinelearning deeplearning News
3.8 years ago by carlopecoraro2 ★ 2.2k
1
vote
2
replies
1.4k
views
News: NCBI Datasets - try it out!
ncbi refseq Assembly genome News
2.8 years ago by vkkodali_ncbi ★ 3.4k
13
votes
2
replies
1.1k
views
News: Thank you Biostars!
acknowledgement thank you biostars forum News
3.7 years ago by Glory Basumata ▴ 140
6
votes
2
replies
847
views
News: Temporarily reduced functionality of Ensembl and Ensembl Genomes
Ensembl News
4.0 years ago by Ben_Ensembl ★ 2.1k
11
votes
2
replies
1.2k
views
News: ASA discusses limitations of p-values what are the alternatives?
statistics p-value News
6.9 years ago by dariober 14k
0
votes
2
replies
773
views
News: Training - Introduction to Deep Learning
DeepLearning Python MachineLearning Programming News
2.4 years ago by carlopecoraro2 ★ 2.2k
5
votes
2
replies
1.4k
views
News: #scRNABIO & organoids meeting
single cell sequencing organoids microfluidics News
4.4 years ago by aln ▴ 320
3
votes
2
replies
2.3k
views
News: Samtools/htslib v1.2 released
samtools htslib bcftools News
8.0 years ago by Devon Ryan 102k
2
votes
2
replies
1.2k
views
News: R 3.2.3 is out
R News
7.0 years ago by Antonio R. Franco ★ 5.0k
1
vote
2
replies
1.1k
views
News: Webinar on Diagnosis of Rare Diseases using NGS Based Multi-gene Testing- Case studies by Dr.Aparna Ganapathy on 18 Apr 2018
dna-seq variant calling rare disease strand ngs News
4.8 years ago by Genomics ▴ 70
2
votes
2
replies
1.1k
views
News: GeNets: a unified web platform for network-based genomic analyses
visualization networks RNA-Seq pathways News
updated 4.6 years ago by 125k • written 4.6 years ago by ★ 5.2k
3
votes
2
replies
807
views
News: BETA Testing Opportunity for new RNA-seq data analysis tool
beta rnaseq omics multi-omics ngs News
updated 4.0 years ago by 47k • written 4.0 years ago by • 0
8
votes
2
replies
2.0k
views
News: The bioinformatics chat is a new podcast about bioinformatics. In the first episode we discuss Scallop, a transcriptome assembler
RNA-Seq Assembly podcast News
updated 5.8 years ago by ▴ 320 • written 5.8 years ago by ▴ 120
1
vote
2
replies
839
views
News: Sage Bionetworks is seeking researchers and data scientists to participate in software user research!
research software News
updated 4.0 years ago by 47k • written 4.0 years ago by ▴ 30
10
votes
2
replies
3.0k
views
News: Biostars based Q&A for Bioconductor: http://support.bioconductor.org
RNA-Seq bioconductor
updated 12 months ago by 37k • written 8.4 years ago by 152k
2
votes
2
replies
1.8k
views
News: Briefings In Bioinformatics International, Interdisciplinary, Multi-Level Bioinformatics Training And Education
education News
updated 9.4 years ago by 8.5k • written 9.4 years ago by 152k
2
votes
2
replies
1.9k
views
News: De Novo Transcriptome Analysis (Assembly and Differential Gene Expression in Non-Model Organisms)
RNA-Seq Assembly News
updated 6.5 years ago by 18k • written 6.6 years ago by ▴ 300
5
votes
2
replies
4.1k
views
News: GeneSCF (Gene Enrichment Tool): Advice to users
genescf kegg GO annotation GeneSCF News
2.3 years ago by EagleEye 7.4k
2
votes
2
replies
1.7k
views
News: BioC 2015, Bioconductor Annual Conference, July 20-22, Seattle, WA
Bioconductor Conference
updated 6 months ago by 37k • written 7.8 years ago by ★ 1.6k
2
votes
2
replies
2.4k
views
News: ENCODE 2015: Research Applications and Users Meeting
mouseencode News workshop encode
updated 15 months ago by 37k • written 7.7 years ago by 34k
1
vote
2
replies
508
views
News: Online training - Introduction to Nextflow
Bionfirmatics Pipeline Workflow Netflow
5 months ago by carlopecoraro2 ★ 2.2k
5
votes
2
replies
3.4k
views
News: Tuesday 10/29 Live Tour Of New Features In Integrated Genome Browser 8
genome-browser rna-seq chip-seq News
updated 14 months ago by 37k • written 9.3 years ago by ★ 2.3k
2
votes
2
replies
1.6k
views
News: Introducing a new Instructor of Physalia-Courses: Dr. January Weiner
next-gen SNP sequence News
6.1 years ago by carlopecoraro2 ★ 2.2k
0
votes
2
replies
1.9k
views
News: Seqnews.Net: Discover And Share News On Next-Generation Sequencing
News
10.1 years ago by David Langenberger 9.8k
0
votes
2
replies
404
views
News: Seascape Genomics in R
Genomics Seascape R
updated 7 weeks ago by 37k • written 3 months ago by ★ 2.2k
2
votes
2
replies
1.2k
views
News: Course: Applied Statistics and Bioinformatics with R and Bioconductor. (Berlin, 22-26 January 2018)
next-gen sequencing R News
5.2 years ago by carlopecoraro2 ★ 2.2k
0
votes
2
replies
476
views
News: Reduced functionality of Ensembl and Ensembl Genomes on the 13th November
ensembl downtime News
3.2 years ago by Emily 23k
4
votes
2
replies
2.8k
views
News: NCBI NOW (Next generation sequencing Online Workshop) October 13 - 23 , 2015
NCBI mapping DNA-Seq RNA-Seq NGS News
updated 4.7 years ago by • 0 • written 7.3 years ago by ★ 2.2k
7
votes
2
replies
2.0k
views
News: Upcoming Hands-On Workshop: microRNA Analysis Using Next-Generation Sequencing
microRNA NGS workshop News
updated 6.6 years ago by ▴ 460 • written 6.6 years ago by 9.8k
0
votes
2
replies
1.6k
views
News: Webinar: Multi-omics: Challenges, opportunities and application to biomarker discovery
next-gen multiomics sequencing biomarker cancer News
5.6 years ago by Persistent LABS ▴ 750
1,000 results • Page 4 of 20
Recent Votes
A: Using ColSums vs sizeFactors in read count normalization
Comment: a problem with getBM
C: Reorder heatmap rows in a dataset with missing values
A: Difference between GTF file with CHR and without CHR. ENSEMBL
Answer: Base recalibration in normal vs. tumor somatic variant calling in WXS data?
A: from .BAM to .BAI using samtools
Comment: bgzip error 4
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Answer: how to do a reliable single cell sequencing analysis? by ATpoint 68k
The usual approach for starters would be to follow guided and well-accepted tutorials. That would (incomplete list) be: - The Biocon…
Answer: a problem with getBM by sanaz • 0
head(ensembl_ids) X baseMean log2FoldChange lfcSE stat pvalue padj 1 ENSG00000000938.13 1344.2587 2.107…
Answer: Recommendations needed for a tool for comparative gene set enrichment analyses v by fuellen ▴ 20
Hello and Thanks! OK, I should have written "The gene lists I have prepared" instead of "The DEG lists I have prepared". In any case, is …
Comment: a problem with getBM by Mike Smith ★ 1.9k
Can you update your post to show some examples of what's in your `ensembl_ids` object? Perhaps the contents of `head(ensembl_ids)`. It's …
Answer: trainGlimmerHMM Error while training a genome by congliu37 • 0
Hello, I got the same error using ~20,000 genes for training and it was solved by reducing training gene set. I assume GlimmerHMM was no…
Comment: How to Calulate Allele Frequency from a VCF File? by Jeremy Leipzig 21k
That's correct. You don't have biallelic alleles in mitochondria, so you can use either the Allele depth (AD) or depth of coverage (DP) for…
Comment: How to calculate tumor mutation burden (TMB)? by Fabio Marroni ★ 2.9k
I just published a [post][1] on my blog, in which I include a simple R function for computing TMB. Try to see if that helps. I followed the…
Comment: Gene Set Enrichment Analysis, pathway, metabolism by Rob ▴ 160
Thank you FrankStarling, ATpoint, jv, these were so helpful.
Comment: translate CDS to prot formatted with nt nubers by Pierre Lindenbaum 152k
> with nucleotide numbers and DNA/prot aligned line by line what does it mean ? Create a Minimal, Reproducible Example to enable others t…
Comment: How to translate CDS to an amino acid sequence by vvasta • 0
I tried several of the online DNA translation tools but have not found one that would output DNA/prot alignment with nucleotide number w…
Comment: How possible deadlocks are there while migrating from MYISAM to InnoDb? by Pierre Lindenbaum 152k
but you already knew it. https://www.biostars.org/p/9551097/#9551098
Comment: How possible deadlocks are there while migrating from MYISAM to InnoDb? by Pierre Lindenbaum 152k
your question is not related to bioinformatics. Ask stackoverflow.com.
Comment: Statistical test for checking cis regulation? by Fabio Marroni ★ 2.9k
Hi lumos. It is not very clear to me what kind of information are you using for the test and how are you measuring cis-regulation. Are you …
Comment: Error 134 while aligning using hisat2 by Fabio Marroni ★ 2.9k
Other instances of the same error were indeed related to disk [space][1]. Can you post the output of the command: `df -h /bams/`? Another p…
Comment: **Error: unable to open file or unable to determine types for file** by Pierre Lindenbaum 152k
``` Please ensure that your file is TAB delimited (e.g., cat -t FILE). - Also ensure that your file has integer chromosome coordinates in t…
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