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News: Bioinformatics Contest 2020. Call for problems
contest News
3.1 years ago by alserg ▴ 830
8
votes
3
replies
1.5k
views
News: fastp 0.22 released, with new FASTQ deduplication feature.
fastp
updated 18 months ago by 127k • written 19 months ago by ★ 2.4k
7
votes
3
replies
1.5k
views
News: New NCBI Datasets home and documentation pages provide easier access
ncbi gene SARS-CoV-2 genome
updated 23 months ago by 97k • written 23 months ago by ▴ 50
2
votes
3
replies
1.2k
views
News: Bio-On-Magnetic-Beads (BOMB): Open platform for high-throughput nucleic acid extraction and manipulation
rna-seq rna extraction dna extraction Tool News
updated 4.5 years ago by 47k • written 4.5 years ago by ▴ 20
0
votes
2
replies
456
views
News: Seascape Genomics in R
Genomics Seascape R
updated 3 months ago by 38k • written 5 months ago by ★ 2.3k
0
votes
2
replies
1.8k
views
News: NVIDIA GPU Conference sponsorship for Biostars + updated advertising terms
biostars meta
updated 11 months ago by 38k • written 8.1 years ago by 97k
3
votes
2
replies
991
views
News: Course "Data Crunching: from hell to heaven", Udine, Italy, 25-27 July, 2018
next generation sequencing NGS News
4.8 years ago by Fabio Marroni ★ 3.0k
0
votes
2
replies
3.0k
views
News: Course: Practical GWAS using Linux and R. 23-27 October 2017, Berlin (Germany)
GWAS R Linux Bioinformatics News
5.6 years ago by carlopecoraro2 ★ 2.3k
0
votes
2
replies
2.3k
views
News: PART FUNDED SCHOLARSHIPS - Coding, data management, and Shiny applications using RStudio for evolutionary biologists and ecologists - May 2017
R Rstudio Shiny apps News
6.0 years ago by oliverhooker ▴ 110
0
votes
2
replies
1.5k
views
News: 2 Days Hands on Workshop on Transcriptome-Seq Data Analysis
RNA-Seq sequencing SNP Assembly rna-seq News
5.8 years ago by clovergenls • 0
6
votes
2
replies
869
views
News: Temporarily reduced functionality of Ensembl and Ensembl Genomes
Ensembl News
4.1 years ago by Ben_Ensembl ★ 2.2k
1
vote
2
replies
1.5k
views
News: Workshop: Data analysis in high throughput biology. deadline today (2 places left)
R next-gen RNA-Seq News
6.0 years ago by carlopecoraro2 ★ 2.3k
5
votes
2
replies
4.2k
views
News: GeneSCF (Gene Enrichment Tool): Advice to users
kegg GeneSCF GO annotation
updated 6 weeks ago by 38k • written 6.2 years ago by 7.4k
3
votes
2
replies
820
views
News: BETA Testing Opportunity for new RNA-seq data analysis tool
beta rnaseq omics multi-omics ngs News
updated 4.2 years ago by 47k • written 4.2 years ago by • 0
2
votes
2
replies
1.2k
views
News: R 3.2.3 is out
R News
7.2 years ago by Antonio R. Franco ★ 5.0k
5
votes
2
replies
691
views
News: The precisionFDA BioCompute Object App-a-thon has been extended to October 18!
challenge BioCompute bioinformatics News
3.7 years ago by hollystephens723 ▴ 70
8
votes
2
replies
655
views
News: Save time and money through improved onboarding of your NGS data scientists
NGS data-analysis
updated 8 days ago by 38k • written 3.2 years ago by 9.9k
2
votes
2
replies
1.9k
views
News: 2017 NIH SUMMER INTERNSHIP PROGRAM IN BIOMEDICAL RESEARCH (SIP)--applications open
training NIH News
6.4 years ago by Sean Davis 26k
0
votes
2
replies
1.4k
views
News: Free Webinar: Sequence alignment: the central step in reference based Next Generation Sequencing data analysis
next-gen alignment sangenix SAM News
6.2 years ago by Persistent LABS ▴ 750
13
votes
2
replies
1.1k
views
News: Thank you Biostars!
acknowledgement thank you biostars forum News
3.9 years ago by Glory Basumata ▴ 140
1
vote
2
replies
2.0k
views
News: Workshop: Metagenomics, Metatranscriptomics, and multi'omics for microbial community studies (9-13 April 2018 in Berlin)
Metagenomics Bioinformatics Metatranscriptomics News
5.1 years ago by carlopecoraro2 ★ 2.3k
1
vote
2
replies
1.4k
views
News: NCBI Datasets - try it out!
ncbi refseq Assembly genome News
3.0 years ago by vkkodali_ncbi ★ 3.4k
5
votes
2
replies
1.4k
views
News: #scRNABIO & organoids meeting
single cell sequencing organoids microfluidics News
4.6 years ago by aln ▴ 320
2
votes
2
replies
1.7k
views
News: BioC 2015, Bioconductor Annual Conference, July 20-22, Seattle, WA
Bioconductor Conference
updated 8 months ago by 38k • written 7.9 years ago by ★ 1.6k
9
votes
2
replies
14k
views
News: Bio-Linux 8 is now available
genome rna-seq alignment Assembly next-gen
updated 15 months ago by 38k • written 8.7 years ago by ★ 2.2k
3
votes
2
replies
1.0k
views
News: Genome Informatics meeting software list
software genomics informatics meetings News
5.4 years ago by Sean Davis 26k
11
votes
2
replies
1.3k
views
News: ASA discusses limitations of p-values what are the alternatives?
statistics p-value News
7.0 years ago by dariober 14k
1
vote
2
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544
views
News: Ensembl reduced functionality, early March
ensembl service News
3.2 years ago by Emily 23k
1
vote
2
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1.2k
views
News: Webinar on Diagnosis of Rare Diseases using NGS Based Multi-gene Testing- Case studies by Dr.Aparna Ganapathy on 18 Apr 2018
dna-seq variant calling rare disease strand ngs News
4.9 years ago by Genomics ▴ 70
5
votes
2
replies
3.4k
views
News: Tuesday 10/29 Live Tour Of New Features In Integrated Genome Browser 8
genome-browser RNA-seq ChIP-seq
updated 25 days ago by 38k • written 9.4 years ago by ★ 2.3k
0
votes
2
replies
665
views
News: Online Course - A Practical Introduction to NGS Data Analysis (February 01-03, 2023)
NGS DNAseq variant-calling RNAseq
8 weeks ago by David Langenberger 9.9k
10
votes
2
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3.0k
views
News: Biostars based Q&A for Bioconductor: http://support.bioconductor.org
RNA-Seq bioconductor
updated 14 months ago by 38k • written 8.5 years ago by 153k
0
votes
2
replies
1.8k
views
News: RNA-Seq Data Analysis Workshop in Berlin, Germany (13 - 16 March 2018)
sequencing NGS RNA-Seq News
5.2 years ago by David Langenberger 9.9k
1
vote
2
replies
366
views
News: Course: Network Analysis in R
NetworkAnalyis R
8 weeks ago by carlopecoraro2 ★ 2.3k
1
vote
2
replies
357
views
News: Gene Set Enrichment Analysis in R/Bioconductor
Gene-Set-Enrichment-Analysis R Cancer-Genomics GSEA
4 months ago by carlopecoraro2 ★ 2.3k
3
votes
2
replies
3.5k
views
News: Course/Workshop: Informatics For Rna-Sequence Analysis (June, 2013)
RNA-seq
updated 4 weeks ago by 38k • written 10.2 years ago by 20k
6
votes
2
replies
2.0k
views
News: Galaxy-specific Biostar Instance
galaxy biostars
updated 5 weeks ago by 38k • written 8.9 years ago by ▴ 380
6
votes
2
replies
2.2k
views
News: Interested in de novo transcriptome assembly using Trinity? Check out our interview to Brian Haas
rna-seq alignment RNA-Seq News
6.0 years ago by carlopecoraro2 ★ 2.3k
14
votes
2
replies
5.0k
views
News: Open Targets, identifying targets for drug development in the treatment of diseases.
Tools Bioinformatics Drug open targets database News
4.3 years ago by Denise CS ★ 5.2k
1
vote
2
replies
1.3k
views
News: My own brand-new blog for bioinformatics learning
learning
updated 6 weeks ago by 38k • written 5.3 years ago by ▴ 100
5
votes
2
replies
1.3k
views
News: Google Dataset Search
google News
updated 4.4 years ago by ▴ 10 • written 4.6 years ago by 153k
2
votes
2
replies
749
views
News: Interested in Machine Learning?
machinelearning deeplearning News
3.9 years ago by carlopecoraro2 ★ 2.3k
0
votes
2
replies
1.6k
views
News: Webinar: Multi-omics: Challenges, opportunities and application to biomarker discovery
next-gen multiomics sequencing biomarker cancer News
5.7 years ago by Persistent LABS ▴ 750
0
votes
2
replies
491
views
News: Reduced functionality of Ensembl and Ensembl Genomes on the 13th November
ensembl downtime News
3.4 years ago by Emily 23k
0
votes
2
replies
565
views
News: ClusteredNR NCBI BLAST database provides faster searches and more informative BLAST results
NCBI BLAST
10 months ago by PeterC_NCBI ▴ 210
0
votes
2
replies
297
views
News: Course - Metagenomics, metatranscriptomics, and multi'omics for microbial community Studies
Metagenomics Metatranscriptomics Multiomics
updated 8 days ago by 38k • written 8 days ago by ★ 2.3k
2
votes
2
replies
2.4k
views
News: ENCODE 2015: Research Applications and Users Meeting
workshop mouse-encode encode
updated 4 days ago by 38k • written 7.8 years ago by 34k
4
votes
2
replies
1.1k
views
News: Hands-On Workshop: How to use bisulfite-treated sequencing to study DNA methylation (BS-Seq, Bisulfite-Seq, WGBS)
methylation bisulfite Workshop News
3.5 years ago by Lars ▴ 970
4
votes
2
replies
2.8k
views
News: NCBI NOW (Next generation sequencing Online Workshop) October 13 - 23 , 2015
NCBI mapping DNA-Seq RNA-Seq NGS News
updated 4.9 years ago by • 0 • written 7.5 years ago by ★ 2.2k
13
votes
2
replies
2.7k
views
News: A Summary Of All Encode Related News On The Openhelix Blog: Encode Floods The News
encode
updated 4 weeks ago by 38k • written 10.6 years ago by 97k
1,000 results • Page 4 of 20
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downloading human gene symbol with duplicates
Answer: How to make cut off linein cluster,
How to make cut off linein cluster,
Answer: GetBM - GERP conservation score for GRCm39
Answer: Using STAR for RNA seq-alignment.
NCBI's IgBLAST version 1.21.0 is now available
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Recent Replies
Comment: Is it possible to do DGE analysis using log 2 normalized data with EdgeR ? by Adaline.D • 0
That explains a lot to me. Thank you, seidel! They used Affymetrix Human Gene 1.0 ST Array chips. Hope you have a wonderful day.
Comment: How to make cut off linein cluster, by Info.shi ▴ 20
Thank you so much it worked. I highly appreciate your help.
Answer: How to make cut off linein cluster, by Jeremy ▴ 770
Try adding the following line of code: abline(h = .02)
Comment: Problem with fatsq-dump by Utpal • 0
Thank you for your support. I tried the command conda install -c bioconda sra-tools But, still with the command, fastq-dump it return…
Comment: RNA Sequencing and Vg pan -transcriptome build by Jordan M Eizenga ▴ 70
The `vg mpmap` subcommand has features for mapping RNA-seq data to a graph. We describe in more detail in [this publication][1], including …
Comment: how to import hdf5 Hi-C data into R using HiTC package by rpolicastro 11k
From the error you may need to specify the file path instead of passing it the imported data.
Comment: RNA Sequencing and Vg pan -transcriptome build by cmdcolin ★ 2.9k
i am not sure how about the data input format but 'hisat2' is able to 'align rna-seq to a population reference'. this may be a little diffe…
Comment: Is it possible to do DGE analysis using log 2 normalized data with EdgeR ? by seidel 11k
What technology is the GEO data set derived from? Signal intensity implies a fluorescence read out (i.e. microarray). If that's the case, y…
Comment: Log2 FC Threshold by seidel 11k
Given that 0.2 is a 1.15 fold change (2^0.2) you're right to be skeptical, but there's no clear answer as to the significance. Consider tha…
Comment: Read lengths greater than insert length by GenoMax 127k
As I said above the adapters are each ~60 bp long so they add ~120 bp (5' and 3' end adapters) to the length of the DNA fragment. What you …
Comment: Problem with fatsq-dump by GenoMax 127k
Looks like the developers have an answer for this error: https://github.com/ncbi/sra-tools/issues/139 At least the program seems to be ins…
Comment: Read lengths greater than insert length by shpak.max ▴ 30
I'm not claiming that all fragment lengths are exactly 50, the typical range for my data is 45-60. However, my read lengths are all 150, so…
Answer: Read lengths greater than insert length by GenoMax 127k
Illumina libraries are made by adding adapters to the ends of DNA fragment(s). Those adapters themselves are about 60 nucleotides long. Not…
Answer: How to get fraction of unspliced reads for specific gene from scRNAseq Cell Rang by Rob 5.9k
If you have the raw data, you can easily get this information using [alevin-fry](https://www.nature.com/articles/s41592-022-01408-3). It pr…
Answer: Matching gene-expression data with clinical data: best practices. by pilargmarch ▴ 60
I really like using [the R/Bioconductor package TCGAbiolinks][1], it gives you clinical and expression data by patient ID. [1]: http…
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