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21 results • Page
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News:
Announcement: Research Topic "Mechanistic, Machine Learning and Hybrid Models of the 'Other' Endocrine Regulatory Systems in Health and Disease", Vol…
mathematical-modelling
endocrinology
ML
systems-biology
machine-learning
20 days ago by
Johannes W. Dietrich
• 0
12
votes
2
replies
423
views
News:
8th Berlin Summer School in NGS Data Analysis (June 10-14, 2024) - already half booked
Workshop
RNA-Seq
DNA-Seq
Illumina
9 days ago by
David Langenberger
11k
8
votes
2
replies
749
views
News:
FINAL CALL - Single-Cell RNA-Seq Data Analysis: A Practical Introduction (May 6-8, 2024 in Berlin)
single-cell
sequencing
13 days ago by
David Langenberger
11k
0
votes
0
replies
153
views
News:
Online course: Analysis of Prokaryotic Pangenomes (Last call)
Prokaryotic
Bacterial-Genomics
Pangenomics
updated 21 days ago by
Ram
43k • written 21 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
151
views
News:
Online course: Introduction to GWAS
GWAS
Imputation
StatisticalPower
25 days ago by
carlopecoraro2
★ 2.5k
2
votes
0
replies
105
views
News:
Course Functional Programming with R
Rstats
TScourses
Rproject
KeepLearning
Rlang
8 days ago by
Transmitting Science communication
▴ 70
0
votes
0
replies
105
views
News:
Online course: Multivariate Data Analysis with R and vegan
Multivariate-Statistics
vegan
R
updated 10 days ago by
Ram
43k • written 11 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
93
views
News:
Course - Agent-Based Modelling Using NetLogo - University of Lodz, Poland
Netlogo
Individual-Based-Models
Agent-Based-Models
updated 17 hours ago by
Ram
43k • written 20 hours ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
129
views
News:
Online course: Food Traceability Using Genomic Tools
Nanopore
Genomic-Tools
Illumina
Food-Traceability
updated 15 days ago by
Ram
43k • written 15 days ago by
carlopecoraro2
★ 2.5k
2
votes
0
replies
108
views
News:
Online Course Introduction to Network Analysis and Modelling
Python
Network-Analysis
updated 7 days ago by
Ram
43k • written 7 days ago by
Transmitting Science communication
▴ 70
0
votes
0
replies
91
views
News:
Online course: Meta-analysis in R
Meta-Analysis
Statistics
R
updated 17 hours ago by
Ram
43k • written 19 hours ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
136
views
News:
Online course: Eukaryotic Metabarcoding
Metabarcoding
Biodiversity
R
eDNA
17 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
172
views
News:
Online course: Meta-analysis in R
Meta-Analysis
R
updated 7 days ago by
Ram
43k • written 7 days ago by
carlopecoraro2
★ 2.5k
1
vote
0
replies
159
views
News:
Landscape Genomics course in Switzerland
LFMM
Landscape-Genomics
Sambada
R
Local-Adaptation
updated 10 days ago by
Ram
43k • written 12 days ago by
carlopecoraro2
★ 2.5k
1
vote
0
replies
117
views
News:
Online Live Course: Introduction to Machine Learning in R
Rstats
TScourses
Rlang
Rproject
updated 7 days ago by
Ram
43k • written 7 days ago by
Transmitting Science communication
▴ 70
2
votes
0
replies
112
views
News:
Online Course Generalised Additive Mixed Models (GAMM): modelling space-time correlation structures
GAMM
Rlang
Rstats
Rproject
updated 7 days ago by
Ram
43k • written 7 days ago by
Transmitting Science communication
▴ 70
0
votes
0
replies
185
views
News:
Online course: Reproducibility in Bioinformatics
Singularity
Version-Control
Docker
Containers
updated 21 days ago by
Ram
43k • written 21 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
124
views
News:
Deadline Approaching: PETs for Public Health Challenge
privacy
public-health-challenge
updated 3 days ago by
Ram
43k • written 3 days ago by
polarise
▴ 380
2
votes
0
replies
106
views
News:
Online course: Genome Annotation
Genome-Assembly
RNA-seq
Genome-Annotation
updated 9 days ago by
Ram
43k • written 9 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
152
views
News:
Online course: Network Analysis in R
NetworkAnalyis
R
4 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
151
views
News:
Final Call - Bioinformatics Pipeline Development with Nextflow (May 27-29, 2024)
workshop
RNA-seq
nextflow
DNA-seq
updated 2 days ago by
Ram
43k • written 2 days ago by
David Langenberger
11k
21 results • Page
1 of 1
Recent Votes
Comment: Filtration Of Reads With Length Lower Than 30 From Bam
How to compare the quality of assemblies
Filtration Of Reads With Length Lower Than 30 From Bam
Answer: Filtration Of Reads With Length Lower Than 30 From Bam
Answer: How to compare the quality of assemblies
Comment: How to compare the quality of assemblies
Bedtools merge but only if intersection exists
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Popular Question
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Michael
54k
Scholar
to
Gordon Smyth
★ 7.0k
Popular Question
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yueli7
▴ 250
Popular Question
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GenoMax
141k
Recent Replies
Answer: Mapping cDNA sequence of a single gene to a genome not hosted at UCSC server (wi
by
Pierre Lindenbaum
161k
> server so I cannot use Blat for this purpose. blat is avilable as a standane tool: http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86…
Answer: Mapping cDNA sequence of a single gene to a genome not hosted at UCSC server (wi
by
b.contreras.moreira
▴ 150
My favourite for this task would be [GMAP]( http://research-pub.gene.com/gmap ), which can produce GFF format with option `-f 2`. It is…
Answer: Prediction of Ribosomal RNA Genes Using RNAmmer Software
by
colindaven
6.3k
Another alternative is the truly free implementation barrnap https://github.com/tseemann/barrnap. This is also installable via conda so qui…
Comment: Filtration Of Reads With Length Lower Than 30 From Bam
by
Hagen
▴ 10
thanks! This saved me quite some time, I was about to write code to calculate the aligned length from the CIGAR. But this can be done with …
Comment: Per base sequence content failed miserably
by
Kai Xin
• 0
will look into that. Thank you very much
Comment: Korean human genome reference file
by
SeoGyun
• 0
Thanks..... But I want to do imputation, so I have to make it as a vcf file, but the site only has a fatsa file....
Comment: miRNAs quantification using mirdeep2 tool
by
Ashok
• 0
thank you for your reply https://github.com/rajewsky-lab/mirdeep2/blob/master/TUTORIAL.md i saw this github tutorial for miRNA quantifica…
Comment: Load a full GFF3 into annotation track using arrow (Apollo)
by
cmdcolin
★ 3.8k
Hi there, I let a developer know of this thread and they said they can check it out next week. Feel free to post to the https://github.com/…
Comment: How to get the reference panel for UKBB
by
航太郎
• 0
Thanks for your guide!
Comment: Removing duplicates
by
joe
▴ 500
I'd try those OP @samuel recommends My guess is you're new to ONT, fast5 is the 'raw data' which is current over time...other than generat…
Comment: RNA seq differential expression analysis
by
swbarnes2
14k
No. Find a tutorial, try it, then if you have specific questions, ask of the galaxy help site.
Answer: Adding CB tag to bam file
by
swbarnes2
14k
Shouldn't you use PicardTools for this?
Comment: Downloaded pdb's on rcsb.org
by
Ram
43k
Sure. Or, one could do: bash try.bash "Homo sapiens" AHR | xargs -I v_pdb curl -s -o v_pdb.pdb https://files.rcsb.org/view/v_pdb.pdb
Comment: Downloaded pdb's on rcsb.org
by
iamsmor
• 0
thank you so much
Comment: Downloaded pdb's on rcsb.org
by
GenoMax
141k
This may be the best option. Get the PDB ID's $ ./get.sh "Mus musculus" AHR 4M4X 5NJ8 5V0L 8H77 Then use `curl` to g…
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