3
votes
1
reply
2.5k
views
6
votes
0
replies
2.5k
views
8
votes
1
reply
2.5k
views
3
votes
0
replies
2.5k
views
2
votes
1
reply
2.5k
views
updated 28 days ago by
Ram
38k
•
written 10.2 years ago by
David Langenberger
9.9k
6
votes
0
replies
2.5k
views
updated 28 days ago by
Ram
38k
•
written 10.0 years ago by
Casey Bergman
18k
1
vote
0
replies
2.4k
views
5.7 years ago by
carlopecoraro2
★
2.3k
11
votes
13
replies
2.4k
views
6.6 years ago by
Ben_Ensembl
★
2.2k
2
votes
2
replies
2.4k
views
updated 2 days ago by
Ram
38k
•
written 7.8 years ago by
Alex Reynolds
34k
5
votes
1
reply
2.4k
views
3
votes
1
reply
2.4k
views
updated 22 days ago by
Ram
38k
•
written 9.2 years ago by
Pierre Lindenbaum
153k
4
votes
5
replies
2.4k
views
updated 6.2 years ago by
hfan22
▴
40
•
written 6.8 years ago by
Alexandre Drouin
▴
90
6
votes
2
replies
2.4k
views
6.3 years ago by
David Langenberger
9.9k
6
votes
0
replies
2.4k
views
News:
http://crackingthebiocode.github.io : Profiles of Computational Biologists & Bioinformaticians
updated 15 days ago by
Ram
38k
•
written 8.5 years ago by
Pierre Lindenbaum
153k
7
votes
4
replies
2.4k
views
6
votes
1
reply
2.4k
views
updated 2.5 years ago by
ghazala.bif.2k18
•
0
•
written 3.3 years ago by
Istvan Albert
97k
0
votes
0
replies
2.4k
views
updated 6.5 years ago by
GenoMax
127k
•
written 6.5 years ago by
carlopecoraro2
★
2.3k
2
votes
1
reply
2.4k
views
3.0 years ago by
carlopecoraro2
★
2.3k
3
votes
2
replies
2.4k
views
updated 8 days ago by
Ram
38k
•
written 8.1 years ago by
Devon Ryan
103k
2
votes
0
replies
2.4k
views
8
votes
0
replies
2.4k
views
updated 6 months ago by
Ram
38k
•
written 7.5 years ago by
David Langenberger
9.9k
1
vote
1
reply
2.4k
views
3
votes
6
replies
2.4k
views
6.7 years ago by
Sean Davis
26k
20
votes
3
replies
2.3k
views
10
votes
4
replies
2.3k
views
News:
Ensembl 77 is out
2
votes
0
replies
2.3k
views
6
votes
1
reply
2.3k
views
0
votes
0
replies
2.3k
views
updated 7 months ago by
Ram
38k
•
written 7.3 years ago by
fiochettal
▴
10
1
vote
0
replies
2.3k
views
5.4 years ago by
carlopecoraro2
★
2.3k
0
votes
2
replies
2.3k
views
2
votes
2
replies
2.3k
views
updated 5.4 years ago by
Istvan Albert
97k
•
written 5.4 years ago by
carlopecoraro2
★
2.3k
2
votes
6
replies
2.3k
views
5.7 years ago by
Rainer
▴
130
3
votes
0
replies
2.3k
views
5.9 years ago by
Bert Overduin
★
3.7k
3
votes
1
reply
2.3k
views
updated 28 days ago by
Ram
38k
•
written 10.1 years ago by
Pierre Lindenbaum
153k
25
votes
7
replies
2.3k
views
6 follow
updated 8 months ago by
Ram
38k
•
written 7.9 years ago by
Pierre Lindenbaum
153k
14
votes
11
replies
2.3k
views
6 follow
updated 4.9 years ago by
ababaian
▴
50
•
written 5.2 years ago by
anicet.ebou
▴
170
0
votes
5
replies
2.3k
views
0
votes
0
replies
2.3k
views
updated 15 months ago by
Ram
38k
•
written 7.5 years ago by
David Langenberger
9.9k
15
votes
4
replies
2.3k
views
updated 28 days ago by
Ram
38k
•
written 10.1 years ago by
Pierre Lindenbaum
153k
0
votes
0
replies
2.3k
views
updated 14 days ago by
Ram
38k
•
written 8.3 years ago by
andorjkiss
▴
40
1
vote
0
replies
2.3k
views
6.0 years ago by
oliverhooker
▴
110
2
votes
0
replies
2.3k
views
3
votes
0
replies
2.3k
views
updated 15 days ago by
Ram
38k
•
written 8.5 years ago by
Devon Ryan
103k
2
votes
0
replies
2.2k
views
4
votes
0
replies
2.2k
views
updated 5 months ago by
Ram
38k
•
written 7.6 years ago by
sayonidas03
▴
100
6
votes
2
replies
2.2k
views
News:
Interested in de novo transcriptome assembly using Trinity? Check out our interview to Brian Haas
6.0 years ago by
carlopecoraro2
★
2.3k
13
votes
8
replies
2.2k
views
7.0 years ago by
Anima Mundi
★
2.9k
0
votes
0
replies
2.2k
views
5.4 years ago by
oliverhooker
▴
110
8
votes
8
replies
2.2k
views
written 3.1 years ago by
Istvan Albert
97k
0
votes
0
replies
2.2k
views
6.0 years ago by
oliverhooker
▴
110
Recent Votes
Recent Locations •
All
Germany, just now
Spain, just now
Sweden, 1 minute ago
India, 1 minute ago
United Kingdom, 2 minutes ago
Galway, Ireland, 2 minutes ago
United States, 2 minutes ago
Recent Awards •
All
Popular Question to
randalljellis
▴
90
Popular Question to
RvV
▴
10
Popular Question to
farzaneafzali
▴
70
Scholar to
MirianT_NCBI
▴
460
Popular Question to
Ap1438
▴
50
Popular Question to
genomes_and_MGEs
▴
10
Popular Question to
txema.heredia
▴
70
Recent Replies
Comment: NCBI's Foreign Contamination Screen (FCS) tool improves the quality of GenBank
by
PeterC_NCBI
▴
200
Thank you for the feedback. I'll pass it along to the team. Yes, it does require a lot or RAM. One option of course would be to run it on t…
Answer: How to find promoter sequence of a gene?
by
Getting there
▴
90
I would start with ENCODE data here [ENCODE PROJECT][1]
You can select a specific transcription factor you are interested in, a tissue t…
Comment: SKAT in R
by
acvill
▴
290
I have no sense of whether SKAT is the right tool for your analysis, but some insight into your errors: did you mean `data = snps` instead …
Comment: How to demultiplex single end - dual index run - NextSeq 500
by
Apex92
▴
260
Thank you for your input. How can I check if length of the index cycles matches length of my indexes. I am not sure about it and do not wan…
Answer: How to demultiplex single end - dual index run - NextSeq 500
by
GenoMax
127k
Looks like you did this right.
Only thing you could try is to remove `--barcode-mismatches 0` which would allow one error in each index. …
Comment: How to colour points in cnetplot of clustprofiler?
by
mrmodenait
•
0
Hey guys! I think I may have an answer to your question. So to change the colour of the gene points, you need to supply a vector to `foldCh…
Comment: Active enhancers for mm39
by
Matthias Zepper
3.4k
Then using the enhancers called using [by the FANTOM5][1] project is likely the most promising approach. Since they [are defined by CAGE-se…
Comment: Problem with fatsq-dump
by
GenoMax
127k
> But the command fastq-dump SRR1972917 does not.
What does it not do? What do you get when you try `which fastq-dump`? I just checked tha…
Answer: LIMMA calculates identical adj.P.Val for different proteins from proteomics
by
ATpoint
70k
Please google what the Benjamini-Hochberg correction is and what it does. In a nutshell, it corrects for multiple testing, outputting these…
Comment: query UCSC db for CDS coordinates (Gencode)
by
GenoMax
127k
> it's hard to discover what's new, what already exists, what's the
> purpose of each tool . samtools, gatk etc... have a release page on
>…
Comment: query UCSC db for CDS coordinates (Gencode)
by
Pierre Lindenbaum
153k
1) it's fun :-D
2) there's is a bunch of amazing tools under https://hgdownload.soe.ucsc.edu/admin/exe/ but it's hard to discover what's …
Comment: how to get to a VCF from bam files
by
GenoMax
127k
If you only have BAM files you need in the directory you are working in then `*.bam` would be ok. Most people working with human samples ca…
Answer: query UCSC db for CDS coordinates (Gencode)
by
Maximilian Haeussler
★
1.5k
The UCSC command line tool for this operation is "genePredToBed". To break a BED into one line per exon, use "bedToExons". The tools can be…
Comment: in an RNA-seq experiment, what threshold would you use to define a set of expres
by
i.sudbery
16k
Try: https://bioinformatics.stackexchange.com/questions/687/what-methods-are-available-to-find-a-cutoff-value-for-non-expressed-genes-in-rn…
Answer: GetBM - GERP conservation score for GRCm39
by
Ben_Ensembl
★
2.2k
Hi Kyle,
The GERP scores are not available through BioMart (nor the Ensembl REST API). The most efficient method for retrieving these scor…
Traffic: 2882 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6